HHsearch alignment of GI: 254780529 and MMDB domain: 3cyp_B_
>3cyp_B (B:) Chemotaxis protein MOTB; bacterial flagellar motor, peptidoglycan binding, bacterial flagellum, flagellar rotation, inner membrane, membrane; 1.60A {Helicobacter pylori} PDB: 3cyq_B*
Probab=99.91 E-value=5.7e-24 Score=178.66 Aligned_cols=108 Identities=21% Similarity=0.460 Sum_probs=98.1
Q ss_pred CCCCCCCCCCC-CCHHHHHHHHHHHHHHHHCCC--CEEEEEEECCCCCC-CCCCCHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 67455568754-683565654436789861278--33898731467667-874106999999999999999986999657
Q gi|254780529|r 233 NTPMFDKSSSI-PLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 (343)
Q Consensus 233 ~~~lF~~gsa~-l~~~~~~~l~~ia~~l~~~~~--~i~IeGHTD~~p~~-g~~~~Nw~LS~~RA~aV~~~L~~~Gv~~~r 308 (343)
..++|+.||++ |+++++..|++++..|+.+|+ .|.|+||||++++. |.+.+||.||.+||.+|+.||+..|+++.|
T Consensus 3 ~~v~F~~~ss~~l~~~~~~~l~~ia~~l~~~~~~~~I~I~GhtD~~~~~~g~~~~N~~LS~~RA~~V~~~l~~~gi~~~r 82 (138)
T 3cyp_B 3 DPFTFENATSDAINQDMMLYIERIAKIIQKLPKRVHINVRGFTDDTPLVKTRFKSHYELAANRAYRVMKVLIQYGVNPNQ 82 (138)
T ss_dssp CCEECSSTTCCCCCHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCCCC----CCSHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred CCEECCCCCHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCE
T ss_conf 86663899624339989999999999999689970899998608988777870779999999999999999985999565
Q ss_pred EEEEEECCCCCCCCCCCCCC--CCCCEEEEEEECC
Q ss_conf 12256303348888988521--3375599999569
Q gi|254780529|r 309 ISKISGFAHHRLKIASDPMN--SANRRIDILVEDR 341 (343)
Q Consensus 309 i~~v~G~g~~~P~~~n~t~~--~~NRRVEi~i~~~ 341 (343)
|. +.|||+++|+++|++.. ++||||||+|...
T Consensus 83 i~-~~g~G~~~p~~~~~~~~~~~~NRRVei~i~~~ 116 (138)
T 3cyp_B 83 LS-FSSYGSTNPIAPNDSLENRMKNNRVEIFFSTD 116 (138)
T ss_dssp EE-EEECTTCSCSSCTTSHHHHHHHSEEEEEEEEE
T ss_pred EE-EEEECCCCCCCCCCCHHHHHHCCCEEEEEECC
T ss_conf 99-99845567679993978997249689999708