HHsearch results for GI: 254780529 and protein with PDBid: 1r1m_A
>1r1m_A Outer membrane protein class 4; 1.90A {Neisseria meningitidis} SCOP: d.79.7.1
Probab=99.91 E-value=1.2e-24 Score=182.16 Aligned_cols=105 Identities=23% Similarity=0.319 Sum_probs=95.1
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHEE
Q ss_conf 567455568754683565654436789861278-3389873146766787410699999999999999998699965712
Q gi|254780529|r 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 (343)
Q Consensus 232 ~~~~lF~~gsa~l~~~~~~~l~~ia~~l~~~~~-~i~IeGHTD~~p~~g~~~~Nw~LS~~RA~aV~~~L~~~Gv~~~ri~ 310 (343)
...+||++||+.|++.++..|+.++..|+.+|. .|.|+||||++ |+..+||.||.+||.+|++||+..|+++.||.
T Consensus 14 ~~~v~F~~~s~~L~~~~~~~L~~ia~~l~~~~~~~I~I~GhtD~~---G~~~~N~~LS~~RA~aV~~~L~~~Gi~~~ri~ 90 (164)
T 1r1m_A 14 SAKTLFGFDKDSLRAEAQDNLKVLAQRLSRTNIQSVRVEGHTDFM---GSDKYNQALSERRAYVVANNLVSNGVPVSRIS 90 (164)
T ss_dssp EHHHHHTTSSSCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECCSS---SCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEE
T ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC---CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHEE
T ss_conf 773357289743698999999999999977898189999981898---98556269999999999999998599989989
Q ss_pred EEEECCCCCCCCCCCCCC--CC--------------------CCEEEEEEEC
Q ss_conf 256303348888988521--33--------------------7559999956
Q gi|254780529|r 311 KISGFAHHRLKIASDPMN--SA--------------------NRRIDILVED 340 (343)
Q Consensus 311 ~v~G~g~~~P~~~n~t~~--~~--------------------NRRVEi~i~~ 340 (343)
+.|||+++|+++|+|+. ++ ||||||.|..
T Consensus 91 -~~g~Ge~~P~~~n~t~~~~a~~~~~~~~~~~r~~~i~~~~~NRRVEi~v~~ 141 (164)
T 1r1m_A 91 -AVGLGESQAQMTQVCEAEVAKLGAKVSKAKKREALIACIEPDRRVDVKIRS 141 (164)
T ss_dssp -EEECTTTTCCCHHHHHHHHHTCCSSCCSSHHHHHHHHHTGGGSEEEEEEEE
T ss_pred -EEEECCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEEEC
T ss_conf -999767688898979788742144100000046665303788988999961