HHSEARCH alignment of GI: 254780529 and SCOP domain: d2aizp1

Alignment
>d2aizp1 d.79.7.1 (P:1-134) Peptidoglycan-associated lipoprotein, PAL, periplasmic domain {Haemophilus influenzae [TaxId: 727]}
Probab=99.89  E-value=3.3e-23  Score=171.00  Aligned_cols=100  Identities=19%  Similarity=0.213  Sum_probs=93.3

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHEEEE
Q ss_conf             7455568754683565654436789861278-338987314676678741069999999999999999869996571225
Q gi|254780529|r  234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI  312 (343)
Q Consensus       234 ~~lF~~gsa~l~~~~~~~l~~ia~~l~~~~~-~i~IeGHTD~~p~~g~~~~Nw~LS~~RA~aV~~~L~~~Gv~~~ri~~v  312 (343)
                      .++|++||+.|++.++..|++++..|+.+|+ .|.|.||||+.   |...+||.||.+||.+|+.||+..|+++.||. +
T Consensus        31 ~I~F~~~s~~L~~~~~~~L~~la~~l~~~~~~~i~I~GhtD~~---g~~~~N~~LS~~RA~~V~~~L~~~Gi~~~ri~-~  106 (134)
T d2aizp1          31 TVYFGFDKYDITGEYVQILDAHAAYLNATPAAKVLVEGNTDER---GTPEYNIALGQRRADAVKGYLAGKGVDAGKLG-T  106 (134)
T ss_dssp             EEECCTTCCCCCHHHHHHHHHHHHHHHHSTTCCEEEEEECCSS---SCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEE-E
T ss_pred             EEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC---CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCE-E
T ss_conf             1883799812498899999999999986999689996043433---22111013789999999989977187534551-3


Q ss_pred             EECCCCCCCCCCCCCC--CCCCEEEEE
Q ss_conf             6303348888988521--337559999
Q gi|254780529|r  313 SGFAHHRLKIASDPMN--SANRRIDIL  337 (343)
Q Consensus       313 ~G~g~~~P~~~n~t~~--~~NRRVEi~  337 (343)
                      .|||+++|+.+|.+..  ++||||||+
T Consensus       107 ~g~G~~~P~~~~~~~~~~~~NRRVeiv  133 (134)
T d2aizp1         107 VSYGEEKPAVLGHDEAAYSKNRRAVLA  133 (134)
T ss_dssp             EECTTTSCSSCSCSHHHHHHHSEEEEE
T ss_pred             EECCCCCCCCCCCCHHHHHCCCCEEEE
T ss_conf             775433757889197798623989995


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: OmpA-like
family: OmpA-like
domain: Peptidoglycan-associated lipoprotein, PAL, periplasmic domain
species: Haemophilus influenzae [TaxId: 727]