HHSEARCH alignment of GI: 254780529 and SCOP domain: d2hqsc1

Alignment
>d2hqsc1 d.79.7.1 (C:68-173) Peptidoglycan-associated lipoprotein, PAL, periplasmic domain {Escherichia coli [TaxId: 562]}
Probab=99.89  E-value=2.4e-23  Score=171.87  Aligned_cols=100  Identities=23%  Similarity=0.286  Sum_probs=93.4

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHEEEE
Q ss_conf             7455568754683565654436789861278-338987314676678741069999999999999999869996571225
Q gi|254780529|r  234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI  312 (343)
Q Consensus       234 ~~lF~~gsa~l~~~~~~~l~~ia~~l~~~~~-~i~IeGHTD~~p~~g~~~~Nw~LS~~RA~aV~~~L~~~Gv~~~ri~~v  312 (343)
                      .++|++||+.|++.+...|++++..|+.+|. .|.|+||||+.   |...+||.||.+||.+|+.||+..|+++.||. +
T Consensus         3 ~iyF~~~s~~l~~~~~~~L~~l~~~l~~~~~~~i~I~GhtD~~---g~~~~N~~LS~~RA~~V~~~L~~~Gi~~~ri~-~   78 (106)
T d2hqsc1           3 IVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADER---GTPEYNISLGERRANAVKMYLQGKGVSADQIS-I   78 (106)
T ss_dssp             EEECCTTCCCCCGGGHHHHHHHHHHHHHCTTCCEEEEECCCSS---SCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEE-E
T ss_pred             EEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC---CHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE-E
T ss_conf             8994799773898899999999999986899579998433422---10466655889987679999986698664489-9


Q ss_pred             EECCCCCCCCCCCCCC--CCCCEEEEE
Q ss_conf             6303348888988521--337559999
Q gi|254780529|r  313 SGFAHHRLKIASDPMN--SANRRIDIL  337 (343)
Q Consensus       313 ~G~g~~~P~~~n~t~~--~~NRRVEi~  337 (343)
                      .|||+++|+++|.++.  ++||||||+
T Consensus        79 ~g~G~~~p~~~~~~~~~~~~NRRVeii  105 (106)
T d2hqsc1          79 VSYGKEKPAVLGHDEAAYSKNRRAVLV  105 (106)
T ss_dssp             EECTTSSCSSCSSSHHHHHHHSEEEEE
T ss_pred             EEECCCCCCCCCCCHHHHHHCCCEEEE
T ss_conf             983564767899097799714949996


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: OmpA-like
family: OmpA-like
domain: Peptidoglycan-associated lipoprotein, PAL, periplasmic domain
species: Escherichia coli [TaxId: 562]