RPSBLAST alignment for GI: 254780529 and conserved domain: TIGR03350

>gnl|CDD|132393 TIGR03350, type_VI_ompA, type VI secretion system OmpA/MotB family protein. The flagellar motor protein MotB and the Gram-negative bacterial outer membrane protein OmpA share a region of sequence homology. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. Length = 137

 Score = 60.0 bits (146), Expect = 8e-10
 Identities = 40/147 (27%), Positives = 62/147 (42%), Gaps = 20/147 (13%)

Query: 202 TLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA 260
            L  L+A  I  G+L  +      ++ +   R   +F   S+    +   +L +I + LA
Sbjct: 1   RLRALLAPEIAAGLLTVDEDGDRSVVRL---RGDELFASGSAEVRADFEPLLDRIAKALA 57

Query: 261 HSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319
                I++ GHTD  P R      NW LS  RA +   VL + GV   R+    G     
Sbjct: 58  AVPGRITVVGHTDNVPIRTSRFPSNWHLSEARAKAVADVLAQGGVPAGRVR-AEG----- 111

Query: 320 LKIASDPMNS--------ANRRIDILV 338
            +  S+P+ S         NRR++I V
Sbjct: 112 -RGDSEPIASNATAAGRAQNRRVEIDV 137