RPSBLAST alignment of GI: 254780529 and protein with PDBid: 3cyp

>3cyp_B Chemotaxis protein MOTB; bacterial flagellar motor, peptidoglycan binding, bacterial flagellum, flagellar rotation, inner membrane, membrane; 1.60A {Helicobacter pylori} PDB: 3cyq_B* Length = 138
 Score = 65.7 bits (160), Expect = 1e-11
 Identities = 24/108 (22%), Positives = 56/108 (51%), Gaps = 5/108 (4%)

Query: 237 FDKSSSIPL-PETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRN-IARDNWRLSLDRA 292
           F+ ++S  +  + ++ +++I +++    +   I++RG TD +P      + ++ L+ +RA
Sbjct: 7   FENATSDAINQDMMLYIERIAKIIQKLPKRVHINVRGFTDDTPLVKTRFKSHYELAANRA 66

Query: 293 YSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVE 339
           Y   +VL++ GV+ +++S  S G  +      S      N R++I   
Sbjct: 67  YRVMKVLIQYGVNPNQLSFSSYGSTNPIAPNDSLENRMKNNRVEIFFS 114