RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780529|ref|YP_003064942.1| flagellar motor protein MotB [Candidatus Liberibacter asiaticus str. psy62] (343 letters) >2zov_A Chemotaxis protein MOTB; 2-layer sandwich, bacterial flagellum, cell projection, flagellar rotation, inner membrane, membrane; 2.00A {Salmonella typhimurium} Length = 210 Score = 105 bits (263), Expect = 1e-23 Identities = 45/181 (24%), Positives = 82/181 (45%), Gaps = 3/181 (1%) Query: 165 KSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTG 223 +++ + +++ + RL L + + ++ + + + G Sbjct: 2 DDYTQQQGEVEKQPNIDELKKRMEQSRLNKLRGDLDQLIESDPKLRALRPHLKIDLVQEG 61 Query: 224 ILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR- 282 + I IID +N PMF S+ P +L+ I VL IS+ GHTD P+ N + Sbjct: 62 LRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLAGHTDDFPYANGEKG 121 Query: 283 -DNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341 NW LS DRA ++ + L+ G+ ++ ++ G A P ++ NRRI +LV ++ Sbjct: 122 YSNWELSADRANASRRELVAGGLDNGKVLRVVGMAATMRLSDRGPDDAINRRISLLVLNK 181 Query: 342 Q 342 Q Sbjct: 182 Q 182 >2zvy_A Chemotaxis protein MOTB; 2-layer sandwich, bacterial flagellum, cell inner membrane, cell membrane, flagellar rotation, membrane; 1.75A {Salmonella typhimurium} PDB: 2zvz_A Length = 183 Score = 87.1 bits (215), Expect = 6e-18 Identities = 45/165 (27%), Positives = 78/165 (47%), Gaps = 3/165 (1%) Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKG-VLFETTRTGILISIIDQRNTPMFDK 239 +++ + RL L + + ++ + + + G+ I IID +N PMF Sbjct: 7 DELKKRMEQSRLNKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFKT 66 Query: 240 SSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIAR--DNWRLSLDRAYSAYQ 297 S+ P +L+ I VL IS+ GHTD P+ N + NW LS DRA ++ + Sbjct: 67 GSAEVEPYMRDILRAIAPVLNGIPNRISLAGHTDDFPYANGEKGYSNWELSADRANASRR 126 Query: 298 VLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 L+ G+ ++ ++ G A P ++ NRRI +LV ++Q Sbjct: 127 ELVAGGLDNGKVLRVVGMAATMRLSDRGPDDAINRRISLLVLNKQ 171 >2zf8_A MOTY, component of sodium-driven polar flagellar motor; beta barrel, 2-layer sandwich, flagellum, structural protein; 2.85A {Vibrio alginolyticus} Length = 278 Score = 67.6 bits (165), Expect = 4e-12 Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 8/107 (7%) Query: 237 FDKSSSIPLPETIVVLQKIGEVLAH--STEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +++ + L +I + + H +++ + +TD++ + LS RA S Sbjct: 166 YERQGDQLTKASKKRLSQIADYIRHNQDIDLVLVATYTDSTD---GKSASQSLSERRAES 222 Query: 295 AYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVE 339 G+ EDRI + G+ R + NRR+ I + Sbjct: 223 LRDYFQSLGLPEDRIQ-VQGYGKRRPIADNGSPIGKDKNRRVVISLG 268 >3cyp_B Chemotaxis protein MOTB; bacterial flagellar motor, peptidoglycan binding, bacterial flagellum, flagellar rotation, inner membrane, membrane; 1.60A {Helicobacter pylori} PDB: 3cyq_B* Length = 138 Score = 65.7 bits (160), Expect = 1e-11 Identities = 24/108 (22%), Positives = 56/108 (51%), Gaps = 5/108 (4%) Query: 237 FDKSSSIPL-PETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRN-IARDNWRLSLDRA 292 F+ ++S + + ++ +++I +++ + I++RG TD +P + ++ L+ +RA Sbjct: 7 FENATSDAINQDMMLYIERIAKIIQKLPKRVHINVRGFTDDTPLVKTRFKSHYELAANRA 66 Query: 293 YSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSANRRIDILVE 339 Y +VL++ GV+ +++S S G + S N R++I Sbjct: 67 YRVMKVLIQYGVNPNQLSFSSYGSTNPIAPNDSLENRMKNNRVEIFFS 114 >3ldt_A Outer membrane protein, OMPA family protein; OMPA-like domain, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Legionella pneumophila} Length = 169 Score = 64.9 bits (158), Expect = 2e-11 Identities = 24/134 (17%), Positives = 44/134 (32%), Gaps = 10/134 (7%) Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGH 271 + + + + I F SS L + +L + I + G Sbjct: 37 QDIQYVEYGDTRTLII---PTDKYFMFSSPRLNEICYPGLNNVIRLLNFYPQSTIYVAGF 93 Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNS 329 TD +LS +A + L +G++ R+ G+ A ++ Sbjct: 94 TDNVG---SRSHKRKLSQAQAETMMTFLWANGIAAKRLK-AEGYGDKNAISDNAIIHGSA 149 Query: 330 ANRRIDILVEDRQG 343 NRRI+I +G Sbjct: 150 QNRRIEIQWFTSEG 163 >3oon_A Outer membrane protein (TPN50); protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; 1.79A {Borrelia burgdorferi} Length = 123 Score = 65.1 bits (159), Expect = 2e-11 Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 5/104 (4%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F +S L + + I ++L I I GHT+ + + LS RA + Sbjct: 21 FYPNSFQILQKEYKKIDLIAKLLEKFKKNNILIEGHTEQ---FGLEEEMHELSEKRARAI 77 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIA-SDPMNSANRRIDILV 338 L+K V + G+ + K S P+ + NRR++I + Sbjct: 78 GNYLIKMKVKDKDQILFKGWGSQKPKYPKSSPLKAKNRRVEITI 121 >2kgw_A Outer membrane protein A; OMPA- like, cell membrane, transmembrane; NMR {Mycobacterium tuberculosis} Length = 129 Score = 64.0 bits (156), Expect = 4e-11 Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 9/106 (8%) Query: 237 FDKSSSIPLPETIVVLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSA 295 F + +P +L ++ + L A ++I G+TD + N LS RA Sbjct: 28 FGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTG---SEGINIPLSAQRAKIV 84 Query: 296 YQVLMKSGVSEDRISKISGFAHHRLKIAS--DPMN-SANRRIDILV 338 L+ GV+ D I+ G IAS P + NRR++I+V Sbjct: 85 ADYLVARGVAGDHIA-TVGLGSVNP-IASNATPEGRAKNRRVEIVV 128 >1r1m_A Outer membrane protein class 4; 1.90A {Neisseria meningitidis} SCOP: d.79.7.1 Length = 164 Score = 54.3 bits (130), Expect = 4e-08 Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 25/126 (19%) Query: 236 MFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDRAYS 294 +F E L+ + + L+ + + + + GHTD + N LS RAY Sbjct: 18 LFGFDKDSLRAEAQDNLKVLAQRLSRTNIQSVRVEGHTDFMGSD---KYNQALSERRAYV 74 Query: 295 AYQVLMKSGVSEDRISKIS--------------GFAHHRLKIASDPMNSA-------NRR 333 L+ +GV RIS + A K++ A +RR Sbjct: 75 VANNLVSNGVPVSRISAVGLGESQAQMTQVCEAEVAKLGAKVSKAKKREALIACIEPDRR 134 Query: 334 IDILVE 339 +D+ + Sbjct: 135 VDVKIR 140 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 48.4 bits (115), Expect = 2e-06 Identities = 70/374 (18%), Positives = 122/374 (32%), Gaps = 136/374 (36%) Query: 66 EQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSID--EHITKNSVDLKIGSTNQ--K 121 Q F K L ++G F + P ++ +L +++ K+G +Q Sbjct: 31 SQLQEQFNKILPEPTEG-FAADDEP--TT--PAELVGKFLGYVSSLVEPSKVGQFDQVLN 85 Query: 122 KQYQRLENNIFYLSNSQQSE-HC-KNSLTRDSE----KGKDLCK---------------- 159 EN YL + ++ H L ++++ K K+L K Sbjct: 86 LCLTEFENC--YL---EGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKK 140 Query: 160 -STDLEKSINKE--------------ENYF--L-------PPLSKEKILAMKRKKRLQDL 195 ++ L +++ + ++YF L L + DL Sbjct: 141 SNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVL-------------VGDL 187 Query: 196 AKKISSTLSGLVADNIVKGVLFETTRT-GI-LISIIDQRN-TPMFDKSSSIP--LPETIV 250 K + TLS L+ + E T G+ ++ ++ + TP D SIP P I Sbjct: 188 IKFSAETLSELIRTTLD----AEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP-LIG 242 Query: 251 VLQ--------KI-----GEVLAH---STEVISIRGH-----TDASPFRNIAR-DNW--- 285 V+Q K+ GE+ ++ +T GH T + IA D+W Sbjct: 243 VIQLAHYVVTAKLLGFTPGELRSYLKGAT------GHSQGLVTAVA----IAETDSWESF 292 Query: 286 -RLSLD----------RAYSAY--QVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANR 332 R Y AY L S + ED + G L I++ Sbjct: 293 FVSVRKAITVLFFIGVRCYEAYPNTSLPPS-ILEDSLENNEGVPSPMLSISNLTQEQVQD 351 Query: 333 RIDI----LVEDRQ 342 ++ L +Q Sbjct: 352 YVNKTNSHLPAGKQ 365 Score = 41.1 bits (96), Expect = 4e-04 Identities = 62/272 (22%), Positives = 92/272 (33%), Gaps = 91/272 (33%) Query: 72 FGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLEN-- 129 G +L SK D N + ++ SI + + N V+L I +K + R EN Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR-ENYS 1689 Query: 130 ---------------NIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYF 174 IF + +EH S T SEKG L +T F Sbjct: 1690 AMIFETIVDGKLKTEKIF----KEINEH-STSYTFRSEKG--LLSATQ-----------F 1731 Query: 175 LPPLSKEKILAMKRKKRLQDLAKKISSTLSGLV-ADNIVKGVLFETTRTGILISIIDQRN 233 P L + K +DL K GL+ AD G L S+ D Sbjct: 1732 TQP-----ALTLMEKAAFEDLKSK------GLIPADATFAG--HSLGEYAALASLAD--- 1775 Query: 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTD--ASPFRNIARDNW------ 285 SI E++V EV+ RG T A P + R N+ Sbjct: 1776 ------VMSI---ESLV-------------EVVFYRGMTMQVAVPRDELGRSNYGMIAIN 1813 Query: 286 --RLSLDRAYSAYQVLMKSGVSEDRISKISGF 315 R++ + A Q ++ +R+ K +G+ Sbjct: 1814 PGRVAASFSQEALQYVV------ERVGKRTGW 1839 >3khn_A MOTB protein, putative; structural genomics, OMPA-like domain, PSI-2, protein structure initiative; 2.03A {Desulfovibrio vulgaris str} Length = 174 Score = 40.6 bits (94), Expect = 5e-04 Identities = 33/170 (19%), Positives = 71/170 (41%), Gaps = 13/170 (7%) Query: 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVL-FETTRTGILISIIDQRNTPM 236 +S E + + ++ L + ++ + + N V+GV+ I + + + + Sbjct: 1 MSLETV---RLQRELIEAQRQTYNEMRTYFTVNGVEGVIGAVFDEGVITLRVPSEV---L 54 Query: 237 FDKSSSIPLPETIVVLQKIGEVLAHSTEV-ISIRGHTDA--SPFRNIARDNWRLSLDRAY 293 F + P VL + ++ E I+I+G TD +DNW +S R+ Sbjct: 55 FAPGAVELAPGADRVLATLKDLFIRRREQNINIKGFTDDVQPSANARFKDNWEVSALRSV 114 Query: 294 SAYQVLMKSGVSEDRISKISGFAHHRLKI--ASDPMNSANRRIDILVEDR 341 + + + +G+ R++ +G SD + NRR++ ++E R Sbjct: 115 NVLRYFLGAGIEPARLT-ATGLGELDPLFPNTSDENRARNRRVEFVLERR 163 >2k1s_A Inner membrane lipoprotein YIAD; abbababab, OMPA, alpha beta, palmitate, transmembrane, structural genomics, PSI-2; NMR {Escherichia coli K12} Length = 149 Score = 34.4 bits (78), Expect = 0.042 Identities = 33/128 (25%), Positives = 52/128 (40%), Gaps = 8/128 (6%) Query: 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVIS-IRGH 271 GV + I++++ N FD SS+ P L + VL + + G+ Sbjct: 17 TGVSVTRSGDNIILNM---PNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVIGY 73 Query: 272 TDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS-GFAHHRLKIASDPMNSA 330 TD+ N RLS RA S L+ GV RI G A+ ++ + Sbjct: 74 TDS---TGGHDLNMRLSQQRADSVASALITQGVDASRIRTQGLGPANPIASNSTAEGKAQ 130 Query: 331 NRRIDILV 338 NRR++I + Sbjct: 131 NRRVEITL 138 >2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein/lipoprotein complex; 1.50A {Escherichia coli} SCOP: d.79.7.1 PDB: 2w8b_C 1oap_A Length = 118 Score = 33.7 bits (76), Expect = 0.060 Identities = 25/113 (22%), Positives = 40/113 (35%), Gaps = 5/113 (4%) Query: 228 IIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWR 286 ++ Q N FD + +L L + + +++ GH R N Sbjct: 1 MLQQNNIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHA---DERGTPEYNIS 57 Query: 287 LSLDRAYSAYQVLMKSGVSEDRIS-KISGFAHHRLKIASDPMNSANRRIDILV 338 L RA + L GVS D+IS G + + S NRR ++ Sbjct: 58 LGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYSKNRRAVLVY 110 >3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} Length = 197 Score = 29.1 bits (65), Expect = 1.4 Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 11/57 (19%) Query: 117 STNQKKQYQRLENNIFYLSNSQQSEHCKN---SLTRDSEKGKDLCKSTDL---EKSI 167 S +++ +R N L+ CK + +G +C L +K + Sbjct: 6 SIDKRAG-RRGPN----LNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLV 57 >1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C Length = 245 Score = 27.7 bits (61), Expect = 4.1 Identities = 13/83 (15%), Positives = 26/83 (31%), Gaps = 11/83 (13%) Query: 119 NQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178 ++ Q S E+ + E I+K++ Sbjct: 36 SEDSDSVAHSKKEIL---RQMSSPQSRDDKDSKERFSRKMSVQEYE-LIHKDKE------ 85 Query: 179 SKEKILAMKRKKRLQDLAKKISS 201 E L R++ +QD+ +K+S Sbjct: 86 -DENCLRKYRRQCMQDMHQKLSF 107 >1h5w_A Upper collar protein; virus, connector, portal, SH3-like, helix bundle; 2.1A {Bacteriophage phi-29} SCOP: e.27.1.1 PDB: 1ijg_A 1jnb_A 1fou_A Length = 309 Score = 27.4 bits (60), Expect = 4.8 Identities = 16/50 (32%), Positives = 25/50 (50%) Query: 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQ 297 T L+ LA E+IS+ + +P A DN +LSL + Y+ Y+ Sbjct: 130 TTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYE 179 >1o7j_A L-asparaginase; atomic resolution, hydrolase; 1.0A {Erwinia chrysanthemi} SCOP: c.88.1.1 PDB: 1hfj_A 1hfk_A* 1hg0_A 1hg1_A 1hfw_A* 1jsr_A* 1jsl_A 2gvn_A 1zcf_A 2hln_A* 2jk0_A Length = 327 Score = 26.9 bits (59), Expect = 6.2 Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 2/38 (5%) Query: 35 IVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPF 72 + +D + A L+M + T D K I++YF+ + Sbjct: 292 GLVSDSLNPAHARILLMLALTRTSD--PKVIQEYFHTY 327 >1tfr_A T4 RNAse H; 5U-3U exonuclease, RNA:RNA, DNA:DNA, metal-dependent, magnesium-containing, hydrolase (nucleic acid); 2.06A {Enterobacteria phage T4} SCOP: a.60.7.1 c.120.1.2 PDB: 2ihn_A Length = 305 Score = 26.7 bits (58), Expect = 7.7 Identities = 15/162 (9%), Positives = 39/162 (24%), Gaps = 9/162 (5%) Query: 45 MAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPER-----SSQNKID 99 +++ + K K E + + N Sbjct: 145 EGHKILIISSDGDFTQLHKYPNVKQWSPMHKKWVKIKSGSAEIDCMTKILKGDKKDNVAS 204 Query: 100 LSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCK 159 + + V+ + + + + + N+ +++ D Sbjct: 205 VKVRSDFWFTRVEGERTPSMKTSIVEAIANDREQAKVLLTESEYNRY--KENLVLIDFDY 262 Query: 160 -STDLEKSINKEENYFLPPLSKEKILAMKRKKRLQDLAKKIS 200 ++ +I N + KI + K L L I+ Sbjct: 263 IPDNIASNIVNYYNS-YKLPPRGKIYSYFVKAGLSKLTNSIN 303 >2qtw_A Proprotein convertase subtilisin/kexin type 9 propeptide; coronary heart disease, hypercholesterolemia, low density lipoprotein receptor, alternative splicing; HET: NAG; 1.90A {Homo sapiens} PDB: 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P Length = 124 Score = 26.5 bits (58), Expect = 8.3 Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 8/70 (11%) Query: 258 VLAHS---TEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISG 314 VLA + H + F A+D WRL Y V++K + + + Sbjct: 14 VLALRSEEDGLAEAPEHGTTATFHRCAKDPWRLP-----GTYVVVLKEETHLSQSERTAR 68 Query: 315 FAHHRLKIAS 324 + Sbjct: 69 RLQAQAARRG 78 >2jx3_A Protein DEK; alpha helix, SAF/SAP motif, DNA binding, chromosomal rearrangement, DNA-binding, nucleus, phosphorylation, proto oncogene; NMR {Homo sapiens} Length = 131 Score = 26.6 bits (59), Expect = 9.0 Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 7/85 (8%) Query: 114 KIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTR-DSEKGKDLCKSTDLEKSINKEE- 171 + G+ + K+ + + S Q + + L + + K +C+ DLE+S E Sbjct: 39 RPGTVSSLKKNVGQFSGFPFEKGSVQYKKKEEMLKKFRNAMLKSICEVLDLERSGVNSEL 98 Query: 172 -----NYFLPPLSKEKILAMKRKKR 191 N+ + P K L +K Sbjct: 99 VKRILNFLMHPKPSGKPLPKSKKTC 123 >3nxk_A Cytoplasmic L-asparaginase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; 2.40A {Campylobacter jejuni subsp} Length = 334 Score = 26.6 bits (58), Expect = 9.1 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 5/50 (10%) Query: 21 VAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 VA+ D+ LG + A+ + A L+M + T D K I++YF Sbjct: 288 VAVSDSDEKLG---FISAEDLNPQKARVLLMLALTKTSD--PKKIQEYFL 332 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.315 0.131 0.366 Gapped Lambda K H 0.267 0.0680 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,783,288 Number of extensions: 125480 Number of successful extensions: 434 Number of sequences better than 10.0: 1 Number of HSP's gapped: 420 Number of HSP's successfully gapped: 31 Length of query: 343 Length of database: 5,693,230 Length adjustment: 93 Effective length of query: 250 Effective length of database: 3,438,538 Effective search space: 859634500 Effective search space used: 859634500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 57 (25.8 bits)