BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780529|ref|YP_003064942.1| flagellar motor protein MotB [Candidatus Liberibacter asiaticus str. psy62] (343 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780529|ref|YP_003064942.1| flagellar motor protein MotB [Candidatus Liberibacter asiaticus str. psy62] Length = 343 Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/343 (100%), Positives = 343/343 (100%) Query: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD Sbjct: 1 MNSHGDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDD 60 Query: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ Sbjct: 61 TKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQ 120 Query: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK Sbjct: 121 KKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSK 180 Query: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS Sbjct: 181 EKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKS 240 Query: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM Sbjct: 241 SSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLM 300 Query: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG Sbjct: 301 KSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 >gi|254780953|ref|YP_003065366.1| OmpA/MotB [Candidatus Liberibacter asiaticus str. psy62] Length = 190 Score = 34.7 bits (78), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 4/68 (5%) Query: 251 VLQKIGEVL-AHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 +LQ I +L + VI+I+ HTD+ ++N +S +RA L++ GVS +R Sbjct: 95 MLQLIATILNKFPSTVIAIQSHTDSI---GTLKNNLLISQERADVIKSYLIQRGVSSNRF 151 Query: 310 SKISGFAH 317 + GFA+ Sbjct: 152 ISVRGFAY 159 >gi|254780547|ref|YP_003064960.1| OmpA/MotB [Candidatus Liberibacter asiaticus str. psy62] Length = 160 Score = 34.3 bits (77), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 5/78 (6%) Query: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDR 291 ++ FD SS P I VL +G L H + + I GH D RN + L L R Sbjct: 50 DSVFFDTSSYSIRPADIQVLSNLGSWLEKHDCDFL-IEGHADELGSRN---SSIALGLRR 105 Query: 292 AYSAYQVLMKSGVSEDRI 309 AY+ + + G+S R+ Sbjct: 106 AYAVFNYFVARGISASRM 123 >gi|254781202|ref|YP_003065615.1| hypothetical protein CLIBASIA_05545 [Candidatus Liberibacter asiaticus str. psy62] Length = 864 Score = 26.2 bits (56), Expect = 0.83, Method: Compositional matrix adjust. Identities = 11/29 (37%), Positives = 18/29 (62%) Query: 217 FETTRTGILISIIDQRNTPMFDKSSSIPL 245 F TT TG+ ++I+D N+ K +S+ L Sbjct: 668 FTTTPTGMFLNILDLSNSAKMPKGASMAL 696 >gi|254781172|ref|YP_003065585.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter asiaticus str. psy62] Length = 731 Score = 25.4 bits (54), Expect = 1.3, Method: Compositional matrix adjust. Identities = 10/28 (35%), Positives = 17/28 (60%) Query: 250 VVLQKIGEVLAHSTEVISIRGHTDASPF 277 V++++ GEV+ ++I H DA PF Sbjct: 401 VLVKRAGEVIPKVVDIIVNERHPDAQPF 428 >gi|255764513|ref|YP_003065530.2| glutamyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 492 Score = 25.4 bits (54), Expect = 1.6, Method: Compositional matrix adjust. Identities = 10/45 (22%), Positives = 25/45 (55%) Query: 43 VLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQ 87 L+ F ++++ + DDD ++Q + F + ++ + +FD+Q Sbjct: 276 ALINFLALLFVHKSEDDDELMDMQQLIHHFDLHHLSKAGAVFDKQ 320 >gi|254780871|ref|YP_003065284.1| lipoprotein-releasing system ATP-binding protein lolD [Candidatus Liberibacter asiaticus str. psy62] Length = 227 Score = 23.5 bits (49), Expect = 4.9, Method: Compositional matrix adjust. Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 3/63 (4%) Query: 98 IDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDL 157 +D S+ E+I + I N K YQR + + Y+ SQ + + ++ ++ + Sbjct: 101 MDFSVIENIIFPQI---IAGINHKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAI 157 Query: 158 CKS 160 C++ Sbjct: 158 CRA 160 >gi|254780612|ref|YP_003065025.1| putative transmembrane protein [Candidatus Liberibacter asiaticus str. psy62] Length = 503 Score = 23.5 bits (49), Expect = 5.3, Method: Compositional matrix adjust. Identities = 13/35 (37%), Positives = 16/35 (45%) Query: 141 EHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFL 175 EH +NS+ R E K LE+ NK E L Sbjct: 28 EHARNSVARRLESMKPRLPKEILERQFNKLEQAIL 62 >gi|254780947|ref|YP_003065360.1| transcription-repair coupling factor [Candidatus Liberibacter asiaticus str. psy62] Length = 1187 Score = 23.5 bits (49), Expect = 5.6, Method: Compositional matrix adjust. Identities = 9/25 (36%), Positives = 16/25 (64%) Query: 247 ETIVVLQKIGEVLAHSTEVISIRGH 271 ETI+VL + V+ S ++SI+ + Sbjct: 107 ETIIVLTTVSAVMCRSVNIMSIKDY 131 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.315 0.131 0.366 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 222,075 Number of Sequences: 1233 Number of extensions: 9263 Number of successful extensions: 40 Number of sequences better than 100.0: 15 Number of HSP's better than 100.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 17 length of query: 343 length of database: 328,796 effective HSP length: 75 effective length of query: 268 effective length of database: 236,321 effective search space: 63334028 effective search space used: 63334028 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 39 (19.6 bits)