HHsearch alignment for GI: 254780530 and conserved domain: PRK09098
>PRK09098 type III secretion system protein HrpB; Validated.
Probab=94.84 E-value=0.36 Score=27.84 Aligned_cols=99 Identities=14% Similarity=0.175 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999999999999999999999999899999999999877
Q gi|254780530|r 47 EQDKAYQEGYNKAIHDRELYWKSKNDFIQRSHDNEIADLRELFESSTSKAIAIAVRDSFKCFSDSLECEVIRILKSVLDI 126 (216)
Q Consensus 47 er~eAya~G~a~a~~e~~~~~e~e~~~l~~~Ha~eLeelR~~~~ee~A~~IA~~i~e~~~~le~~Is~~vArIL~PvL~e 126 (216)
T Consensus 73 e~e~a~~~GY~eG~~ral~e~~~r~a~~~~~~~~-------------------~~~~m~~rLa~iV~~AVekIv----~~ 129 (229)
T PRK09098 73 EADRSARLGYAAGLRQALAEWHARGADHAFAERR-------------------AARRMRERLAEIVAAAVEQIV----HG 129 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHH----HH
T ss_conf 9999999889999999999999999999999999-------------------999999999999999999999----71
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCC
Q ss_conf 99999999999999999504687618884888999999984587
Q gi|254780530|r 127 GLSRKAAIEFAAVVVDFLKKGDCGKIVIHGPKNLHSLIEECLGE 170 (216)
Q Consensus 127 ~l~~qAv~~la~~i~~~~~dg~~~~I~V~GP~~L~e~L~~~Lg~ 170 (216)
T Consensus 130 e~~~aL~~ra~~~l~~~v~~~~~l~VRVh-P-dD~d~ar~a~~~ 171 (229)
T PRK09098 130 EDPAALFARAAQTLEGVLDGASYLTVRVH-P-ADLDAARRAFGA 171 (229)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEEEC-H-HHHHHHHHHHHH
T ss_conf 39888999999999998624662899988-8-779999998999