HHsearch alignment for GI: 254780530 and conserved domain: PRK09098

>PRK09098 type III secretion system protein HrpB; Validated.
Probab=94.84  E-value=0.36  Score=27.84  Aligned_cols=99  Identities=14%  Similarity=0.175  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999999999999999999999999999899999999999877
Q gi|254780530|r   47 EQDKAYQEGYNKAIHDRELYWKSKNDFIQRSHDNEIADLRELFESSTSKAIAIAVRDSFKCFSDSLECEVIRILKSVLDI  126 (216)
Q Consensus        47 er~eAya~G~a~a~~e~~~~~e~e~~~l~~~Ha~eLeelR~~~~ee~A~~IA~~i~e~~~~le~~Is~~vArIL~PvL~e  126 (216)
T Consensus        73 e~e~a~~~GY~eG~~ral~e~~~r~a~~~~~~~~-------------------~~~~m~~rLa~iV~~AVekIv----~~  129 (229)
T PRK09098         73 EADRSARLGYAAGLRQALAEWHARGADHAFAERR-------------------AARRMRERLAEIVAAAVEQIV----HG  129 (229)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHH----HH
T ss_conf             9999999889999999999999999999999999-------------------999999999999999999999----71


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCC
Q ss_conf             99999999999999999504687618884888999999984587
Q gi|254780530|r  127 GLSRKAAIEFAAVVVDFLKKGDCGKIVIHGPKNLHSLIEECLGE  170 (216)
Q Consensus       127 ~l~~qAv~~la~~i~~~~~dg~~~~I~V~GP~~L~e~L~~~Lg~  170 (216)
T Consensus       130 e~~~aL~~ra~~~l~~~v~~~~~l~VRVh-P-dD~d~ar~a~~~  171 (229)
T PRK09098        130 EDPAALFARAAQTLEGVLDGASYLTVRVH-P-ADLDAARRAFGA  171 (229)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCEEEEEEC-H-HHHHHHHHHHHH
T ss_conf             39888999999999998624662899988-8-779999998999