Query gi|254780530|ref|YP_003064943.1| hypothetical protein CLIBASIA_02085 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 216 No_of_seqs 32 out of 34 Neff 4.3 Searched_HMMs 23785 Date Tue May 31 19:50:43 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780530.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3lhi_A Putative 6-phosphogluco 29.0 25 0.001 14.3 5.0 42 126-167 12-56 (232) 2 3ico_A 6PGL, 6-phosphogluconol 26.1 28 0.0012 14.0 4.8 42 126-167 33-77 (268) 3 3lwd_A 6-phosphogluconolactona 25.4 29 0.0012 13.9 5.8 43 125-167 10-55 (226) 4 1vl1_A 6PGL, 6-phosphogluconol 25.4 29 0.0012 13.9 3.0 41 126-166 23-66 (232) 5 2nrk_A Hypothetical protein GR 23.7 12 0.00052 16.3 -0.2 28 17-44 29-56 (173) 6 3oc6_A 6-phosphogluconolactona 21.1 35 0.0015 13.3 4.9 42 126-167 17-61 (248) 7 1y89_A DEVB protein; structura 18.1 40 0.0017 12.9 4.1 37 131-167 12-51 (238) 8 3nwp_A 6-phosphogluconolactona 18.0 41 0.0017 12.9 5.2 42 126-167 15-59 (233) 9 2dm9_A V-type ATP synthase sub 15.2 48 0.002 12.4 6.7 60 149-210 119-193 (198) 10 3ol1_A Vimentin; structural ge 12.7 56 0.0023 12.0 3.3 19 68-86 96-114 (119) No 1 >3lhi_A Putative 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.33A {Neisseria gonorrhoeae} Probab=29.04 E-value=25 Score=14.30 Aligned_cols=42 Identities=12% Similarity=0.163 Sum_probs=33.8 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC---CHHHHHHHHHH Q ss_conf 7999999999999999995046876188848---88999999984 Q gi|254780530|r 126 IGLSRKAAIEFAAVVVDFLKKGDCGKIVIHG---PKNLHSLIEEC 167 (216) Q Consensus 126 e~l~~qAv~~la~~i~~~~~dg~~~~I~V~G---P~~L~e~L~~~ 167 (216) +.+...+.+.++..++..+.......|.++| |..+++.|.+. T Consensus 12 ~~~~~~~a~~i~~~l~~~i~~~~~~~i~lsGG~tp~~~y~~L~~~ 56 (232) T 3lhi_A 12 AEAAQSLADAVADALQGALDEKGGAVLAVSGGRSPIAFFNALSQK 56 (232) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCEEEEECCSSTTHHHHHHHHTS T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHH T ss_conf 999999999999999999997799899988967699999999871 No 2 >3ico_A 6PGL, 6-phosphogluconolactonase; ssgcid, infectious disease, niaid, hydrolase, structural genomics; 2.15A {Mycobacterium tuberculosis} Probab=26.07 E-value=28 Score=13.96 Aligned_cols=42 Identities=14% Similarity=0.049 Sum_probs=34.3 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC---CHHHHHHHHHH Q ss_conf 7999999999999999995046876188848---88999999984 Q gi|254780530|r 126 IGLSRKAAIEFAAVVVDFLKKGDCGKIVIHG---PKNLHSLIEEC 167 (216) Q Consensus 126 e~l~~qAv~~la~~i~~~~~dg~~~~I~V~G---P~~L~e~L~~~ 167 (216) +.+...+.+.++..++..+...+.-.|.++| |..|++.|... T Consensus 33 ~~l~~~~A~~i~~~i~~~i~~~g~~~i~lsGGstp~~ly~~L~~~ 77 (268) T 3ico_A 33 DILVAAAGKRLVGAIGAAVAARGQALIVLTGGGNGIALLRYLSAQ 77 (268) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCEEEEECCSHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHH T ss_conf 999999999999999999997898899987896499999999754 No 3 >3lwd_A 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.75A {Chromohalobacter salexigens} Probab=25.41 E-value=29 Score=13.88 Aligned_cols=43 Identities=21% Similarity=0.245 Sum_probs=35.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC---CHHHHHHHHHH Q ss_conf 77999999999999999995046876188848---88999999984 Q gi|254780530|r 125 DIGLSRKAAIEFAAVVVDFLKKGDCGKIVIHG---PKNLHSLIEEC 167 (216) Q Consensus 125 ~e~l~~qAv~~la~~i~~~~~dg~~~~I~V~G---P~~L~e~L~~~ 167 (216) .+.+.+++...++..+++.+...+...|.++| |..+++.|.+. T Consensus 10 ~e~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGG~tp~~~y~~L~~~ 55 (226) T 3lwd_A 10 RQRLAERLADTVAQALEADLAKRERALLVVSGGSTPKPFFTSLAAK 55 (226) T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSCEEEEECCSSTTHHHHHHHHTS T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHC T ss_conf 9999999999999999999986699899977976799999999861 No 4 >1vl1_A 6PGL, 6-phosphogluconolactonase; TM1154, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: CIT; 1.55A {Thermotoga maritima} SCOP: c.124.1.1 PDB: 1pbt_A Probab=25.40 E-value=29 Score=13.88 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=34.1 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC---CHHHHHHHHH Q ss_conf 7999999999999999995046876188848---8899999998 Q gi|254780530|r 126 IGLSRKAAIEFAAVVVDFLKKGDCGKIVIHG---PKNLHSLIEE 166 (216) Q Consensus 126 e~l~~qAv~~la~~i~~~~~dg~~~~I~V~G---P~~L~e~L~~ 166 (216) +.+...+++.++..++..+...+...|.++| |..+++.|.+ T Consensus 23 ~~~~~~~a~~i~~~i~~~l~~~~~~~i~lsGGstp~~~y~~L~~ 66 (232) T 1vl1_A 23 DGYVDFVVEKIRTKMEKLLEEKDKIFVVLAGGRTPLPVYEKLAE 66 (232) T ss_dssp SCHHHHHHHHHHHHHHHHHHHCSCEEEEECCSTTHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHH T ss_conf 99999999999999999998779989998998249999999985 No 5 >2nrk_A Hypothetical protein GRPB; UPF0157, PFAM04229, glutamate-rich protein, PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis V583} SCOP: d.218.1.14 Probab=23.66 E-value=12 Score=16.31 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=13.1 Q ss_pred CCCCCCCCHHHHHHCCCCCCCCCCCCCH Q ss_conf 0383323425542012443644423335 Q gi|254780530|r 17 SLSDKIVLSETIISNSTADVTFSSIADF 44 (216) Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~iDv 44 (216) .|++.++.-+-|+|-+-|.+.+-|+||+ T Consensus 29 ~l~~~~~~IeHIGSTSVpGl~AKpiIDI 56 (173) T 2nrk_A 29 ILKENCLKVEHIGSTSVPNLAAKPIIDF 56 (173) T ss_dssp HHGGGEEEEEEESGGGSTTCCBCSCEEE T ss_pred HCCCCEEEEEEECCCCCCCCCCCCEEEE T ss_conf 5386553788756675289765773578 No 6 >3oc6_A 6-phosphogluconolactonase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, carboxylic ester hydrolase; 2.10A {Mycobacterium smegmatis} Probab=21.07 E-value=35 Score=13.33 Aligned_cols=42 Identities=17% Similarity=0.174 Sum_probs=34.2 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC---CHHHHHHHHHH Q ss_conf 7999999999999999995046876188848---88999999984 Q gi|254780530|r 126 IGLSRKAAIEFAAVVVDFLKKGDCGKIVIHG---PKNLHSLIEEC 167 (216) Q Consensus 126 e~l~~qAv~~la~~i~~~~~dg~~~~I~V~G---P~~L~e~L~~~ 167 (216) +.+...+.+.++..++..+.+.+.-.|.++| |..|+..|.+. T Consensus 17 ~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~~y~~L~~~ 61 (248) T 3oc6_A 17 AALVAAAGDRLVDAISSAIGERGQATIVLTGGGTGIGLLKRVRER 61 (248) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCEEEEECCSHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHH T ss_conf 999999999999999999985899899982881789999999886 No 7 >1y89_A DEVB protein; structural genomics, protein structure initiative, PSI, midwest center for structural genomics, MCSG; HET: 2PE; 2.00A {Vibrio cholerae o1 biovar eltor str} Probab=18.10 E-value=40 Score=12.91 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=27.5 Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEC---CHHHHHHHHHH Q ss_conf 99999999999995046876188848---88999999984 Q gi|254780530|r 131 KAAIEFAAVVVDFLKKGDCGKIVIHG---PKNLHSLIEEC 167 (216) Q Consensus 131 qAv~~la~~i~~~~~dg~~~~I~V~G---P~~L~e~L~~~ 167 (216) .+...++..|...+..+....|-++| |..+++.|.+. T Consensus 12 ~~~~~~a~~i~~~~~~~~~~~i~lsGG~tp~~~y~~L~~~ 51 (238) T 1y89_A 12 AVVKSLADDMLAYSQQGQPVHISLSGGSTPKMLFKLLASQ 51 (238) T ss_dssp HHHHHHHHHHHHHHTTSSCEEEEECCSHHHHHHHHHHTST T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHH T ss_conf 9999999999999985898899977996799999999865 No 8 >3nwp_A 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, hydrolase; HET: MSE P6G PG4; 1.40A {Shewanella baltica} Probab=18.00 E-value=41 Score=12.90 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=31.8 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC---CHHHHHHHHHH Q ss_conf 7999999999999999995046876188848---88999999984 Q gi|254780530|r 126 IGLSRKAAIEFAAVVVDFLKKGDCGKIVIHG---PKNLHSLIEEC 167 (216) Q Consensus 126 e~l~~qAv~~la~~i~~~~~dg~~~~I~V~G---P~~L~e~L~~~ 167 (216) +.+.+.+...++..++..+.....-.|.++| |..|++.|.+. T Consensus 15 ~~l~~~la~~i~~~l~~~i~~~~~~~l~lsGGstp~~ly~~L~~~ 59 (233) T 3nwp_A 15 SALEQQLASKIASQLQEAVDARGKASLVVSGGSTPLKLFQLLSMK 59 (233) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCEEEEECCSSTTHHHHHHHHHC T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHH T ss_conf 999999999999999999986798899976882199999998734 No 9 >2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.85A {Pyrococcus horikoshii OT3} SCOP: d.81.4.1 PDB: 2dma_A Probab=15.15 E-value=48 Score=12.45 Aligned_cols=60 Identities=18% Similarity=0.252 Sum_probs=29.5 Q ss_pred CCEEEEECCHHHHHHHHHH-------CCCCCCCEEEEC----CCCCEEEEEEC----CCHHHHHHHHHHHHHHHHHH Q ss_conf 7618884888999999984-------587500056405----89842899968----20021137999999999998 Q gi|254780530|r 149 CGKIVIHGPKNLHSLIEEC-------LGEYSSAVCYEN----ADTVEFSTKIF----GSVIKTRLESWLSDVKAKIV 210 (216) Q Consensus 149 ~~~I~V~GP~~L~e~L~~~-------Lg~~~~~i~~~~----ad~~Elsv~ig----etVieTRLaaW~~~Lkaav~ 210 (216) .+.++|+..++-...+... +|... +.... .+++=+...-| +-+++|+|..-...+...|. T Consensus 119 ~~~~~i~~~~~D~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~GG~~i~s~dg~i~vd~t~e~~l~~~~~~l~~~i~ 193 (198) T 2dm9_A 119 EKKVRVMSNEKTLGLIASRIEEIKSELGDVS--IELGETVDTMGGVIVETEDGRIRIDNTFEARMERFEGEIRSTIA 193 (198) T ss_dssp CSEEEEECCHHHHHHHHHTHHHHHHHCTTCE--EEECCCCCCSSEEEEEETTSSCEEEEEHHHHHHHTHHHHHHHHH T ss_pred CCCEEEEECHHHHHHHHHHHHHHHHHCCCCE--EECCCCCCCCCCEEEEECCCCEEEECCHHHHHHHHHHHHHHHHH T ss_conf 9965998678779989999999998758871--42278766788769997799878878899999999998799999 No 10 >3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} Probab=12.65 E-value=56 Score=11.99 Aligned_cols=19 Identities=26% Similarity=0.648 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999 Q gi|254780530|r 68 KSKNDFIQRSHDNEIADLR 86 (216) Q Consensus 68 e~e~~~l~~~Ha~eLeelR 86 (216) +.++.+|+..|..|+.+++ T Consensus 96 ~eEl~flk~~heeEi~eLq 114 (119) T 3ol1_A 96 QEEIAFLKKLHEEEIQELQ 114 (119) T ss_dssp HHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHH T ss_conf 9999999988999999999 Done!