Query         gi|254780530|ref|YP_003064943.1| hypothetical protein CLIBASIA_02085 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 216
No_of_seqs    32 out of 34
Neff          4.3 
Searched_HMMs 23785
Date          Tue May 31 19:50:43 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780530.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3lhi_A Putative 6-phosphogluco  29.0      25   0.001   14.3   5.0   42  126-167    12-56  (232)
  2 3ico_A 6PGL, 6-phosphogluconol  26.1      28  0.0012   14.0   4.8   42  126-167    33-77  (268)
  3 3lwd_A 6-phosphogluconolactona  25.4      29  0.0012   13.9   5.8   43  125-167    10-55  (226)
  4 1vl1_A 6PGL, 6-phosphogluconol  25.4      29  0.0012   13.9   3.0   41  126-166    23-66  (232)
  5 2nrk_A Hypothetical protein GR  23.7      12 0.00052   16.3  -0.2   28   17-44     29-56  (173)
  6 3oc6_A 6-phosphogluconolactona  21.1      35  0.0015   13.3   4.9   42  126-167    17-61  (248)
  7 1y89_A DEVB protein; structura  18.1      40  0.0017   12.9   4.1   37  131-167    12-51  (238)
  8 3nwp_A 6-phosphogluconolactona  18.0      41  0.0017   12.9   5.2   42  126-167    15-59  (233)
  9 2dm9_A V-type ATP synthase sub  15.2      48   0.002   12.4   6.7   60  149-210   119-193 (198)
 10 3ol1_A Vimentin; structural ge  12.7      56  0.0023   12.0   3.3   19   68-86     96-114 (119)

No 1  
>3lhi_A Putative 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.33A {Neisseria gonorrhoeae}
Probab=29.04  E-value=25  Score=14.30  Aligned_cols=42  Identities=12%  Similarity=0.163  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC---CHHHHHHHHHH
Q ss_conf             7999999999999999995046876188848---88999999984
Q gi|254780530|r  126 IGLSRKAAIEFAAVVVDFLKKGDCGKIVIHG---PKNLHSLIEEC  167 (216)
Q Consensus       126 e~l~~qAv~~la~~i~~~~~dg~~~~I~V~G---P~~L~e~L~~~  167 (216)
                      +.+...+.+.++..++..+.......|.++|   |..+++.|.+.
T Consensus        12 ~~~~~~~a~~i~~~l~~~i~~~~~~~i~lsGG~tp~~~y~~L~~~   56 (232)
T 3lhi_A           12 AEAAQSLADAVADALQGALDEKGGAVLAVSGGRSPIAFFNALSQK   56 (232)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCEEEEECCSSTTHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf             999999999999999999997799899988967699999999871


No 2  
>3ico_A 6PGL, 6-phosphogluconolactonase; ssgcid, infectious disease, niaid, hydrolase, structural genomics; 2.15A {Mycobacterium tuberculosis}
Probab=26.07  E-value=28  Score=13.96  Aligned_cols=42  Identities=14%  Similarity=0.049  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC---CHHHHHHHHHH
Q ss_conf             7999999999999999995046876188848---88999999984
Q gi|254780530|r  126 IGLSRKAAIEFAAVVVDFLKKGDCGKIVIHG---PKNLHSLIEEC  167 (216)
Q Consensus       126 e~l~~qAv~~la~~i~~~~~dg~~~~I~V~G---P~~L~e~L~~~  167 (216)
                      +.+...+.+.++..++..+...+.-.|.++|   |..|++.|...
T Consensus        33 ~~l~~~~A~~i~~~i~~~i~~~g~~~i~lsGGstp~~ly~~L~~~   77 (268)
T 3ico_A           33 DILVAAAGKRLVGAIGAAVAARGQALIVLTGGGNGIALLRYLSAQ   77 (268)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCEEEEECCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf             999999999999999999997898899987896499999999754


No 3  
>3lwd_A 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.75A {Chromohalobacter salexigens}
Probab=25.41  E-value=29  Score=13.88  Aligned_cols=43  Identities=21%  Similarity=0.245  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC---CHHHHHHHHHH
Q ss_conf             77999999999999999995046876188848---88999999984
Q gi|254780530|r  125 DIGLSRKAAIEFAAVVVDFLKKGDCGKIVIHG---PKNLHSLIEEC  167 (216)
Q Consensus       125 ~e~l~~qAv~~la~~i~~~~~dg~~~~I~V~G---P~~L~e~L~~~  167 (216)
                      .+.+.+++...++..+++.+...+...|.++|   |..+++.|.+.
T Consensus        10 ~e~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGG~tp~~~y~~L~~~   55 (226)
T 3lwd_A           10 RQRLAERLADTVAQALEADLAKRERALLVVSGGSTPKPFFTSLAAK   55 (226)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSSCEEEEECCSSTTHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHC
T ss_conf             9999999999999999999986699899977976799999999861


No 4  
>1vl1_A 6PGL, 6-phosphogluconolactonase; TM1154, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: CIT; 1.55A {Thermotoga maritima} SCOP: c.124.1.1 PDB: 1pbt_A
Probab=25.40  E-value=29  Score=13.88  Aligned_cols=41  Identities=17%  Similarity=0.178  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC---CHHHHHHHHH
Q ss_conf             7999999999999999995046876188848---8899999998
Q gi|254780530|r  126 IGLSRKAAIEFAAVVVDFLKKGDCGKIVIHG---PKNLHSLIEE  166 (216)
Q Consensus       126 e~l~~qAv~~la~~i~~~~~dg~~~~I~V~G---P~~L~e~L~~  166 (216)
                      +.+...+++.++..++..+...+...|.++|   |..+++.|.+
T Consensus        23 ~~~~~~~a~~i~~~i~~~l~~~~~~~i~lsGGstp~~~y~~L~~   66 (232)
T 1vl1_A           23 DGYVDFVVEKIRTKMEKLLEEKDKIFVVLAGGRTPLPVYEKLAE   66 (232)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHCSCEEEEECCSTTHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHH
T ss_conf             99999999999999999998779989998998249999999985


No 5  
>2nrk_A Hypothetical protein GRPB; UPF0157, PFAM04229, glutamate-rich protein, PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis V583} SCOP: d.218.1.14
Probab=23.66  E-value=12  Score=16.31  Aligned_cols=28  Identities=29%  Similarity=0.348  Sum_probs=13.1

Q ss_pred             CCCCCCCCHHHHHHCCCCCCCCCCCCCH
Q ss_conf             0383323425542012443644423335
Q gi|254780530|r   17 SLSDKIVLSETIISNSTADVTFSSIADF   44 (216)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~iDv   44 (216)
                      .|++.++.-+-|+|-+-|.+.+-|+||+
T Consensus        29 ~l~~~~~~IeHIGSTSVpGl~AKpiIDI   56 (173)
T 2nrk_A           29 ILKENCLKVEHIGSTSVPNLAAKPIIDF   56 (173)
T ss_dssp             HHGGGEEEEEEESGGGSTTCCBCSCEEE
T ss_pred             HCCCCEEEEEEECCCCCCCCCCCCEEEE
T ss_conf             5386553788756675289765773578


No 6  
>3oc6_A 6-phosphogluconolactonase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, carboxylic ester hydrolase; 2.10A {Mycobacterium smegmatis}
Probab=21.07  E-value=35  Score=13.33  Aligned_cols=42  Identities=17%  Similarity=0.174  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC---CHHHHHHHHHH
Q ss_conf             7999999999999999995046876188848---88999999984
Q gi|254780530|r  126 IGLSRKAAIEFAAVVVDFLKKGDCGKIVIHG---PKNLHSLIEEC  167 (216)
Q Consensus       126 e~l~~qAv~~la~~i~~~~~dg~~~~I~V~G---P~~L~e~L~~~  167 (216)
                      +.+...+.+.++..++..+.+.+.-.|.++|   |..|+..|.+.
T Consensus        17 ~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~~y~~L~~~   61 (248)
T 3oc6_A           17 AALVAAAGDRLVDAISSAIGERGQATIVLTGGGTGIGLLKRVRER   61 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCEEEEECCSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf             999999999999999999985899899982881789999999886


No 7  
>1y89_A DEVB protein; structural genomics, protein structure initiative, PSI, midwest center for structural genomics, MCSG; HET: 2PE; 2.00A {Vibrio cholerae o1 biovar eltor str}
Probab=18.10  E-value=40  Score=12.91  Aligned_cols=37  Identities=22%  Similarity=0.355  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHCCCCCCEEEEEC---CHHHHHHHHHH
Q ss_conf             99999999999995046876188848---88999999984
Q gi|254780530|r  131 KAAIEFAAVVVDFLKKGDCGKIVIHG---PKNLHSLIEEC  167 (216)
Q Consensus       131 qAv~~la~~i~~~~~dg~~~~I~V~G---P~~L~e~L~~~  167 (216)
                      .+...++..|...+..+....|-++|   |..+++.|.+.
T Consensus        12 ~~~~~~a~~i~~~~~~~~~~~i~lsGG~tp~~~y~~L~~~   51 (238)
T 1y89_A           12 AVVKSLADDMLAYSQQGQPVHISLSGGSTPKMLFKLLASQ   51 (238)
T ss_dssp             HHHHHHHHHHHHHHTTSSCEEEEECCSHHHHHHHHHHTST
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf             9999999999999985898899977996799999999865


No 8  
>3nwp_A 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, hydrolase; HET: MSE P6G PG4; 1.40A {Shewanella baltica}
Probab=18.00  E-value=41  Score=12.90  Aligned_cols=42  Identities=19%  Similarity=0.298  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC---CHHHHHHHHHH
Q ss_conf             7999999999999999995046876188848---88999999984
Q gi|254780530|r  126 IGLSRKAAIEFAAVVVDFLKKGDCGKIVIHG---PKNLHSLIEEC  167 (216)
Q Consensus       126 e~l~~qAv~~la~~i~~~~~dg~~~~I~V~G---P~~L~e~L~~~  167 (216)
                      +.+.+.+...++..++..+.....-.|.++|   |..|++.|.+.
T Consensus        15 ~~l~~~la~~i~~~l~~~i~~~~~~~l~lsGGstp~~ly~~L~~~   59 (233)
T 3nwp_A           15 SALEQQLASKIASQLQEAVDARGKASLVVSGGSTPLKLFQLLSMK   59 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCEEEEECCSSTTHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf             999999999999999999986798899976882199999998734


No 9  
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.85A {Pyrococcus horikoshii OT3} SCOP: d.81.4.1 PDB: 2dma_A
Probab=15.15  E-value=48  Score=12.45  Aligned_cols=60  Identities=18%  Similarity=0.252  Sum_probs=29.5

Q ss_pred             CCEEEEECCHHHHHHHHHH-------CCCCCCCEEEEC----CCCCEEEEEEC----CCHHHHHHHHHHHHHHHHHH
Q ss_conf             7618884888999999984-------587500056405----89842899968----20021137999999999998
Q gi|254780530|r  149 CGKIVIHGPKNLHSLIEEC-------LGEYSSAVCYEN----ADTVEFSTKIF----GSVIKTRLESWLSDVKAKIV  210 (216)
Q Consensus       149 ~~~I~V~GP~~L~e~L~~~-------Lg~~~~~i~~~~----ad~~Elsv~ig----etVieTRLaaW~~~Lkaav~  210 (216)
                      .+.++|+..++-...+...       +|...  +....    .+++=+...-|    +-+++|+|..-...+...|.
T Consensus       119 ~~~~~i~~~~~D~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~GG~~i~s~dg~i~vd~t~e~~l~~~~~~l~~~i~  193 (198)
T 2dm9_A          119 EKKVRVMSNEKTLGLIASRIEEIKSELGDVS--IELGETVDTMGGVIVETEDGRIRIDNTFEARMERFEGEIRSTIA  193 (198)
T ss_dssp             CSEEEEECCHHHHHHHHHTHHHHHHHCTTCE--EEECCCCCCSSEEEEEETTSSCEEEEEHHHHHHHTHHHHHHHHH
T ss_pred             CCCEEEEECHHHHHHHHHHHHHHHHHCCCCE--EECCCCCCCCCCEEEEECCCCEEEECCHHHHHHHHHHHHHHHHH
T ss_conf             9965998678779989999999998758871--42278766788769997799878878899999999998799999


No 10 
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens}
Probab=12.65  E-value=56  Score=11.99  Aligned_cols=19  Identities=26%  Similarity=0.648  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999
Q gi|254780530|r   68 KSKNDFIQRSHDNEIADLR   86 (216)
Q Consensus        68 e~e~~~l~~~Ha~eLeelR   86 (216)
                      +.++.+|+..|..|+.+++
T Consensus        96 ~eEl~flk~~heeEi~eLq  114 (119)
T 3ol1_A           96 QEEIAFLKKLHEEEIQELQ  114 (119)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
T ss_conf             9999999988999999999


Done!