Query gi|254780530|ref|YP_003064943.1| hypothetical protein CLIBASIA_02085 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 216 No_of_seqs 32 out of 34 Neff 4.3 Searched_HMMs 13730 Date Wed Jun 1 09:49:38 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780530.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1oi7a2 c.23.4.1 (A:122-288) S 23.8 7.3 0.00053 16.3 -0.2 21 149-169 147-167 (167) 2 d2nrka1 d.218.1.14 (A:4-170) H 23.1 7.4 0.00054 16.2 -0.2 28 17-44 23-50 (167) 3 d1vl1a_ c.124.1.1 (A:) 6-phosp 18.5 23 0.0017 13.0 3.6 42 125-166 8-52 (218) 4 d2nu7a2 c.23.4.1 (A:122-287) S 13.2 31 0.0023 12.1 1.7 20 149-168 147-166 (166) 5 d1xzpa3 d.250.1.2 (A:1-117) Tr 9.8 40 0.0029 11.4 1.2 22 146-168 13-34 (117) 6 d1nm2a2 d.58.23.1 (A:134-195) 9.4 41 0.003 11.3 2.8 28 143-170 26-53 (62) 7 d1euca2 c.23.4.1 (A:131-306) S 9.4 32 0.0023 12.0 0.1 21 149-169 151-171 (176) 8 d2pc6a2 d.58.18.6 (A:1-77) Ace 9.2 42 0.0031 11.2 1.9 29 149-177 45-73 (77) 9 d2py8a1 a.280.1.1 (A:2-121) Ru 9.0 43 0.0031 11.2 5.3 47 2-58 33-83 (120) 10 d1zeea1 a.266.1.2 (A:6-392) Hy 8.4 29 0.0021 12.3 -0.5 17 1-17 265-281 (387) No 1 >d1oi7a2 c.23.4.1 (A:122-288) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Thermus thermophilus [TaxId: 274]} Probab=23.78 E-value=7.3 Score=16.25 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=15.8 Q ss_pred CCEEEEECCHHHHHHHHHHCC Q ss_conf 761888488899999998458 Q gi|254780530|r 149 CGKIVIHGPKNLHSLIEECLG 169 (216) Q Consensus 149 ~~~I~V~GP~~L~e~L~~~Lg 169 (216) .+-+++.-|+.|++.|++.|| T Consensus 147 aGv~~v~~~~El~d~lk~~lg 167 (167) T d1oi7a2 147 AGIPVADTIDEIVELVKKALG 167 (167) T ss_dssp HTCCBCSSHHHHHHHHHHHHC T ss_pred CCCEECCCHHHHHHHHHHHHC T ss_conf 799783999999999999639 No 2 >d2nrka1 d.218.1.14 (A:4-170) Hypothetical protein GrpB {Enterococcus faecalis [TaxId: 1351]} Probab=23.13 E-value=7.4 Score=16.21 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=13.2 Q ss_pred CCCCCCCCHHHHHHCCCCCCCCCCCCCH Q ss_conf 0383323425542012443644423335 Q gi|254780530|r 17 SLSDKIVLSETIISNSTADVTFSSIADF 44 (216) Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~iDv 44 (216) .|++.++--+-|+|-+-|.+.+-|+||+ T Consensus 23 ~l~~~~~~IeHIGSTsVpGl~AKpiIDI 50 (167) T d2nrka1 23 ILKENCLKVEHIGSTSVPNLAAKPIIDF 50 (167) T ss_dssp HHGGGEEEEEEESGGGSTTCCBCSCEEE T ss_pred HCCCCCCEEEEECCCCCCCCCCCCEEEE T ss_conf 6275211566624477898856872478 No 3 >d1vl1a_ c.124.1.1 (A:) 6-phosphogluconolactonase {Thermotoga maritima [TaxId: 2336]} Probab=18.52 E-value=23 Score=12.98 Aligned_cols=42 Identities=17% Similarity=0.195 Sum_probs=33.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC---CHHHHHHHHH Q ss_conf 77999999999999999995046876188848---8899999998 Q gi|254780530|r 125 DIGLSRKAAIEFAAVVVDFLKKGDCGKIVIHG---PKNLHSLIEE 166 (216) Q Consensus 125 ~e~l~~qAv~~la~~i~~~~~dg~~~~I~V~G---P~~L~e~L~~ 166 (216) .+.+...+++.++..++..+...+.-.|.++| |..+++.|.+ T Consensus 8 ~~~~~~~~a~~i~~~~~~~~~~~~~~~i~lsGG~tp~~~y~~L~~ 52 (218) T d1vl1a_ 8 EDGYVDFVVEKIRTKMEKLLEEKDKIFVVLAGGRTPLPVYEKLAE 52 (218) T ss_dssp SSCHHHHHHHHHHHHHHHHHHHCSCEEEEECCSTTHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHH T ss_conf 789999999999999999998589989997898059999999983 No 4 >d2nu7a2 c.23.4.1 (A:122-287) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Escherichia coli [TaxId: 562]} Probab=13.17 E-value=31 Score=12.09 Aligned_cols=20 Identities=10% Similarity=0.255 Sum_probs=11.5 Q ss_pred CCEEEEECCHHHHHHHHHHC Q ss_conf 76188848889999999845 Q gi|254780530|r 149 CGKIVIHGPKNLHSLIEECL 168 (216) Q Consensus 149 ~~~I~V~GP~~L~e~L~~~L 168 (216) .+-|+|+-+++|++.+++-| T Consensus 147 aGvi~v~~~~el~~~l~~vl 166 (166) T d2nu7a2 147 AGVKTVRSLADIGEALKTVL 166 (166) T ss_dssp TTCEECSSGGGHHHHHHHHC T ss_pred CCCEEECCHHHHHHHHHHHC T ss_conf 89469199999999999869 No 5 >d1xzpa3 d.250.1.2 (A:1-117) TrmE formyl-THF-binding domain {Thermotoga maritima [TaxId: 2336]} Probab=9.82 E-value=40 Score=11.38 Aligned_cols=22 Identities=23% Similarity=0.557 Sum_probs=14.1 Q ss_pred CCCCCEEEEECCHHHHHHHHHHC Q ss_conf 46876188848889999999845 Q gi|254780530|r 146 KGDCGKIVIHGPKNLHSLIEECL 168 (216) Q Consensus 146 dg~~~~I~V~GP~~L~e~L~~~L 168 (216) .+.-.-||||||..+ +.+++.+ T Consensus 13 ~saIaVIRiSG~~a~-~i~~~~~ 34 (117) T d1xzpa3 13 KGAIAILRLSGPDSW-KIVQKHL 34 (117) T ss_dssp SCSCEEEEEESSSHH-HHHHTTE T ss_pred CCEEEEEEEECCCHH-HHHHHHH T ss_conf 656999999995178-9999983 No 6 >d1nm2a2 d.58.23.1 (A:134-195) Probable ACP-binding domain of malonyl-CoA ACP transacylase {Streptomyces coelicolor A3(2) [TaxId: 100226]} Probab=9.44 E-value=41 Score=11.29 Aligned_cols=28 Identities=21% Similarity=0.188 Sum_probs=21.9 Q ss_pred HHCCCCCCEEEEECCHHHHHHHHHHCCC Q ss_conf 9504687618884888999999984587 Q gi|254780530|r 143 FLKKGDCGKIVIHGPKNLHSLIEECLGE 170 (216) Q Consensus 143 ~~~dg~~~~I~V~GP~~L~e~L~~~Lg~ 170 (216) ..-.+.-..++|+||.+=++.+.+.+.. T Consensus 26 iAn~Nsp~q~VisG~~~av~~~~~~~~~ 53 (62) T d1nm2a2 26 PANVNGAGQIVAAGTMEQLAALNEDKPE 53 (62) T ss_dssp EEEEEETTEEEEEEEHHHHHHHHHSCCT T ss_pred EEEECCCCCEEEECCHHHHHHHHHHHHH T ss_conf 8563799969998789999999976883 No 7 >d1euca2 c.23.4.1 (A:131-306) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Probab=9.43 E-value=32 Score=12.02 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=10.2 Q ss_pred CCEEEEECCHHHHHHHHHHCC Q ss_conf 761888488899999998458 Q gi|254780530|r 149 CGKIVIHGPKNLHSLIEECLG 169 (216) Q Consensus 149 ~~~I~V~GP~~L~e~L~~~Lg 169 (216) .+-|+|+-|.+|.+.|++.+. T Consensus 151 aGvi~v~s~~El~~~l~~~~~ 171 (176) T d1euca2 151 AGVVVSMSPAQLGTTIYKEFE 171 (176) T ss_dssp TTCEECSSGGGHHHHHHHHHH T ss_pred CCCEECCCHHHHHHHHHHHHH T ss_conf 898692999999999999998 No 8 >d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]} Probab=9.22 E-value=42 Score=11.24 Aligned_cols=29 Identities=21% Similarity=0.273 Sum_probs=21.4 Q ss_pred CCEEEEECCHHHHHHHHHHCCCCCCCEEE Q ss_conf 76188848889999999845875000564 Q gi|254780530|r 149 CGKIVIHGPKNLHSLIEECLGEYSSAVCY 177 (216) Q Consensus 149 ~~~I~V~GP~~L~e~L~~~Lg~~~~~i~~ 177 (216) +..|++.|++.-++++.++|-..-.-++. T Consensus 45 Rmtivv~~~~~~i~qi~kQL~KlvdVi~V 73 (77) T d2pc6a2 45 RMTLVTNGPDEIVEQITKQLNKLIEVVKL 73 (77) T ss_dssp EEEEEEEECHHHHHHHHHHHHHSTTEEEE T ss_pred EEEEEEECCHHHHHHHHHHHHCCCCEEEE T ss_conf 99999977888999999998578687999 No 9 >d2py8a1 a.280.1.1 (A:2-121) RuBisCo chaperone RbcX {Synechocystis sp., strain PCC 6803 [TaxId: 1143]} Probab=8.95 E-value=43 Score=11.17 Aligned_cols=47 Identities=11% Similarity=0.119 Sum_probs=25.9 Q ss_pred CHHHHHHHHHHCCHHCCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHH----HHHHHHHHHH Q ss_conf 76899998630210003833234255420124436444233357899----9999999999 Q gi|254780530|r 2 SDAVLSRLEDFSRLGSLSDKIVLSETIISNSTADVTFSSIADFQKEQ----DKAYQEGYNK 58 (216) Q Consensus 2 s~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDveaer----~eAya~G~a~ 58 (216) .+....+|.||+.-..++|| |.++..-+.+- + ++ |+| |+.|++..-+ T Consensus 33 np~~~~wL~~f~~~~~~~DG----d~fl~~L~~e~---~--~l-AlRIm~vRe~lAeev~d 83 (120) T d2py8a1 33 NPPQAIWLNQYLASHSIQNG----ETFLTELLDEN---K--EL-VLRILAVREDIAESVLD 83 (120) T ss_dssp CHHHHHHHHHHHHHSCCSSH----HHHHHHHHTTC---H--HH-HHHHHHHHHHHHHHHGG T ss_pred CCHHHHHHHHHHHCCCCCCH----HHHHHHHHHHC---H--HH-HHHHHHHHHHHHHHHHH T ss_conf 92889999998716999878----99999998669---9--99-99999999999999997 No 10 >d1zeea1 a.266.1.2 (A:6-392) Hypothetical protein SO4414 {Shewanella oneidensis [TaxId: 70863]} Probab=8.38 E-value=29 Score=12.30 Aligned_cols=17 Identities=18% Similarity=0.046 Sum_probs=7.4 Q ss_pred CCHHHHHHHHHHCCHHC Q ss_conf 97689999863021000 Q gi|254780530|r 1 MSDAVLSRLEDFSRLGS 17 (216) Q Consensus 1 ms~~~~~~l~df~~~~~ 17 (216) |-|.--.+|.||.+-+| T Consensus 265 MPP~hra~L~d~~r~PS 281 (387) T d1zeea1 265 MMPEDQQILRECMRRPN 281 (387) T ss_dssp SCHHHHHHHHHHTTSCC T ss_pred CCHHHHHHHHHHHCCCH T ss_conf 79789999999863871 Done!