Query         gi|254780530|ref|YP_003064943.1| hypothetical protein CLIBASIA_02085 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 216
No_of_seqs    32 out of 34
Neff          4.3 
Searched_HMMs 13730
Date          Wed Jun  1 09:49:38 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780530.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1oi7a2 c.23.4.1 (A:122-288) S  23.8     7.3 0.00053   16.3  -0.2   21  149-169   147-167 (167)
  2 d2nrka1 d.218.1.14 (A:4-170) H  23.1     7.4 0.00054   16.2  -0.2   28   17-44     23-50  (167)
  3 d1vl1a_ c.124.1.1 (A:) 6-phosp  18.5      23  0.0017   13.0   3.6   42  125-166     8-52  (218)
  4 d2nu7a2 c.23.4.1 (A:122-287) S  13.2      31  0.0023   12.1   1.7   20  149-168   147-166 (166)
  5 d1xzpa3 d.250.1.2 (A:1-117) Tr   9.8      40  0.0029   11.4   1.2   22  146-168    13-34  (117)
  6 d1nm2a2 d.58.23.1 (A:134-195)    9.4      41   0.003   11.3   2.8   28  143-170    26-53  (62)
  7 d1euca2 c.23.4.1 (A:131-306) S   9.4      32  0.0023   12.0   0.1   21  149-169   151-171 (176)
  8 d2pc6a2 d.58.18.6 (A:1-77) Ace   9.2      42  0.0031   11.2   1.9   29  149-177    45-73  (77)
  9 d2py8a1 a.280.1.1 (A:2-121) Ru   9.0      43  0.0031   11.2   5.3   47    2-58     33-83  (120)
 10 d1zeea1 a.266.1.2 (A:6-392) Hy   8.4      29  0.0021   12.3  -0.5   17    1-17    265-281 (387)

No 1  
>d1oi7a2 c.23.4.1 (A:122-288) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=23.78  E-value=7.3  Score=16.25  Aligned_cols=21  Identities=24%  Similarity=0.393  Sum_probs=15.8

Q ss_pred             CCEEEEECCHHHHHHHHHHCC
Q ss_conf             761888488899999998458
Q gi|254780530|r  149 CGKIVIHGPKNLHSLIEECLG  169 (216)
Q Consensus       149 ~~~I~V~GP~~L~e~L~~~Lg  169 (216)
                      .+-+++.-|+.|++.|++.||
T Consensus       147 aGv~~v~~~~El~d~lk~~lg  167 (167)
T d1oi7a2         147 AGIPVADTIDEIVELVKKALG  167 (167)
T ss_dssp             HTCCBCSSHHHHHHHHHHHHC
T ss_pred             CCCEECCCHHHHHHHHHHHHC
T ss_conf             799783999999999999639


No 2  
>d2nrka1 d.218.1.14 (A:4-170) Hypothetical protein GrpB {Enterococcus faecalis [TaxId: 1351]}
Probab=23.13  E-value=7.4  Score=16.21  Aligned_cols=28  Identities=29%  Similarity=0.348  Sum_probs=13.2

Q ss_pred             CCCCCCCCHHHHHHCCCCCCCCCCCCCH
Q ss_conf             0383323425542012443644423335
Q gi|254780530|r   17 SLSDKIVLSETIISNSTADVTFSSIADF   44 (216)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~iDv   44 (216)
                      .|++.++--+-|+|-+-|.+.+-|+||+
T Consensus        23 ~l~~~~~~IeHIGSTsVpGl~AKpiIDI   50 (167)
T d2nrka1          23 ILKENCLKVEHIGSTSVPNLAAKPIIDF   50 (167)
T ss_dssp             HHGGGEEEEEEESGGGSTTCCBCSCEEE
T ss_pred             HCCCCCCEEEEECCCCCCCCCCCCEEEE
T ss_conf             6275211566624477898856872478


No 3  
>d1vl1a_ c.124.1.1 (A:) 6-phosphogluconolactonase {Thermotoga maritima [TaxId: 2336]}
Probab=18.52  E-value=23  Score=12.98  Aligned_cols=42  Identities=17%  Similarity=0.195  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC---CHHHHHHHHH
Q ss_conf             77999999999999999995046876188848---8899999998
Q gi|254780530|r  125 DIGLSRKAAIEFAAVVVDFLKKGDCGKIVIHG---PKNLHSLIEE  166 (216)
Q Consensus       125 ~e~l~~qAv~~la~~i~~~~~dg~~~~I~V~G---P~~L~e~L~~  166 (216)
                      .+.+...+++.++..++..+...+.-.|.++|   |..+++.|.+
T Consensus         8 ~~~~~~~~a~~i~~~~~~~~~~~~~~~i~lsGG~tp~~~y~~L~~   52 (218)
T d1vl1a_           8 EDGYVDFVVEKIRTKMEKLLEEKDKIFVVLAGGRTPLPVYEKLAE   52 (218)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHCSCEEEEECCSTTHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHH
T ss_conf             789999999999999999998589989997898059999999983


No 4  
>d2nu7a2 c.23.4.1 (A:122-287) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=13.17  E-value=31  Score=12.09  Aligned_cols=20  Identities=10%  Similarity=0.255  Sum_probs=11.5

Q ss_pred             CCEEEEECCHHHHHHHHHHC
Q ss_conf             76188848889999999845
Q gi|254780530|r  149 CGKIVIHGPKNLHSLIEECL  168 (216)
Q Consensus       149 ~~~I~V~GP~~L~e~L~~~L  168 (216)
                      .+-|+|+-+++|++.+++-|
T Consensus       147 aGvi~v~~~~el~~~l~~vl  166 (166)
T d2nu7a2         147 AGVKTVRSLADIGEALKTVL  166 (166)
T ss_dssp             TTCEECSSGGGHHHHHHHHC
T ss_pred             CCCEEECCHHHHHHHHHHHC
T ss_conf             89469199999999999869


No 5  
>d1xzpa3 d.250.1.2 (A:1-117) TrmE formyl-THF-binding domain {Thermotoga maritima [TaxId: 2336]}
Probab=9.82  E-value=40  Score=11.38  Aligned_cols=22  Identities=23%  Similarity=0.557  Sum_probs=14.1

Q ss_pred             CCCCCEEEEECCHHHHHHHHHHC
Q ss_conf             46876188848889999999845
Q gi|254780530|r  146 KGDCGKIVIHGPKNLHSLIEECL  168 (216)
Q Consensus       146 dg~~~~I~V~GP~~L~e~L~~~L  168 (216)
                      .+.-.-||||||..+ +.+++.+
T Consensus        13 ~saIaVIRiSG~~a~-~i~~~~~   34 (117)
T d1xzpa3          13 KGAIAILRLSGPDSW-KIVQKHL   34 (117)
T ss_dssp             SCSCEEEEEESSSHH-HHHHTTE
T ss_pred             CCEEEEEEEECCCHH-HHHHHHH
T ss_conf             656999999995178-9999983


No 6  
>d1nm2a2 d.58.23.1 (A:134-195) Probable ACP-binding domain of malonyl-CoA ACP transacylase {Streptomyces coelicolor A3(2) [TaxId: 100226]}
Probab=9.44  E-value=41  Score=11.29  Aligned_cols=28  Identities=21%  Similarity=0.188  Sum_probs=21.9

Q ss_pred             HHCCCCCCEEEEECCHHHHHHHHHHCCC
Q ss_conf             9504687618884888999999984587
Q gi|254780530|r  143 FLKKGDCGKIVIHGPKNLHSLIEECLGE  170 (216)
Q Consensus       143 ~~~dg~~~~I~V~GP~~L~e~L~~~Lg~  170 (216)
                      ..-.+.-..++|+||.+=++.+.+.+..
T Consensus        26 iAn~Nsp~q~VisG~~~av~~~~~~~~~   53 (62)
T d1nm2a2          26 PANVNGAGQIVAAGTMEQLAALNEDKPE   53 (62)
T ss_dssp             EEEEEETTEEEEEEEHHHHHHHHHSCCT
T ss_pred             EEEECCCCCEEEECCHHHHHHHHHHHHH
T ss_conf             8563799969998789999999976883


No 7  
>d1euca2 c.23.4.1 (A:131-306) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=9.43  E-value=32  Score=12.02  Aligned_cols=21  Identities=24%  Similarity=0.328  Sum_probs=10.2

Q ss_pred             CCEEEEECCHHHHHHHHHHCC
Q ss_conf             761888488899999998458
Q gi|254780530|r  149 CGKIVIHGPKNLHSLIEECLG  169 (216)
Q Consensus       149 ~~~I~V~GP~~L~e~L~~~Lg  169 (216)
                      .+-|+|+-|.+|.+.|++.+.
T Consensus       151 aGvi~v~s~~El~~~l~~~~~  171 (176)
T d1euca2         151 AGVVVSMSPAQLGTTIYKEFE  171 (176)
T ss_dssp             TTCEECSSGGGHHHHHHHHHH
T ss_pred             CCCEECCCHHHHHHHHHHHHH
T ss_conf             898692999999999999998


No 8  
>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit,  IlvH {Nitrosomonas europaea [TaxId: 915]}
Probab=9.22  E-value=42  Score=11.24  Aligned_cols=29  Identities=21%  Similarity=0.273  Sum_probs=21.4

Q ss_pred             CCEEEEECCHHHHHHHHHHCCCCCCCEEE
Q ss_conf             76188848889999999845875000564
Q gi|254780530|r  149 CGKIVIHGPKNLHSLIEECLGEYSSAVCY  177 (216)
Q Consensus       149 ~~~I~V~GP~~L~e~L~~~Lg~~~~~i~~  177 (216)
                      +..|++.|++.-++++.++|-..-.-++.
T Consensus        45 Rmtivv~~~~~~i~qi~kQL~KlvdVi~V   73 (77)
T d2pc6a2          45 RMTLVTNGPDEIVEQITKQLNKLIEVVKL   73 (77)
T ss_dssp             EEEEEEEECHHHHHHHHHHHHHSTTEEEE
T ss_pred             EEEEEEECCHHHHHHHHHHHHCCCCEEEE
T ss_conf             99999977888999999998578687999


No 9  
>d2py8a1 a.280.1.1 (A:2-121) RuBisCo chaperone RbcX {Synechocystis sp., strain PCC 6803 [TaxId: 1143]}
Probab=8.95  E-value=43  Score=11.17  Aligned_cols=47  Identities=11%  Similarity=0.119  Sum_probs=25.9

Q ss_pred             CHHHHHHHHHHCCHHCCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHH----HHHHHHHHHH
Q ss_conf             76899998630210003833234255420124436444233357899----9999999999
Q gi|254780530|r    2 SDAVLSRLEDFSRLGSLSDKIVLSETIISNSTADVTFSSIADFQKEQ----DKAYQEGYNK   58 (216)
Q Consensus         2 s~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDveaer----~eAya~G~a~   58 (216)
                      .+....+|.||+.-..++||    |.++..-+.+-   +  ++ |+|    |+.|++..-+
T Consensus        33 np~~~~wL~~f~~~~~~~DG----d~fl~~L~~e~---~--~l-AlRIm~vRe~lAeev~d   83 (120)
T d2py8a1          33 NPPQAIWLNQYLASHSIQNG----ETFLTELLDEN---K--EL-VLRILAVREDIAESVLD   83 (120)
T ss_dssp             CHHHHHHHHHHHHHSCCSSH----HHHHHHHHTTC---H--HH-HHHHHHHHHHHHHHHGG
T ss_pred             CCHHHHHHHHHHHCCCCCCH----HHHHHHHHHHC---H--HH-HHHHHHHHHHHHHHHHH
T ss_conf             92889999998716999878----99999998669---9--99-99999999999999997


No 10 
>d1zeea1 a.266.1.2 (A:6-392) Hypothetical protein SO4414 {Shewanella oneidensis [TaxId: 70863]}
Probab=8.38  E-value=29  Score=12.30  Aligned_cols=17  Identities=18%  Similarity=0.046  Sum_probs=7.4

Q ss_pred             CCHHHHHHHHHHCCHHC
Q ss_conf             97689999863021000
Q gi|254780530|r    1 MSDAVLSRLEDFSRLGS   17 (216)
Q Consensus         1 ms~~~~~~l~df~~~~~   17 (216)
                      |-|.--.+|.||.+-+|
T Consensus       265 MPP~hra~L~d~~r~PS  281 (387)
T d1zeea1         265 MMPEDQQILRECMRRPN  281 (387)
T ss_dssp             SCHHHHHHHHHHTTSCC
T ss_pred             CCHHHHHHHHHHHCCCH
T ss_conf             79789999999863871


Done!