RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780530|ref|YP_003064943.1| hypothetical protein
CLIBASIA_02085 [Candidatus Liberibacter asiaticus str. psy62]
         (216 letters)



>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
          [TaxId: 28901]}
          Length = 643

 Score = 26.5 bits (58), Expect = 1.7
 Identities = 5/23 (21%), Positives = 13/23 (56%)

Query: 52 YQEGYNKAIHDRELYWKSKNDFI 74
          Y+  Y ++I+D + +W  +   +
Sbjct: 20 YETKYKQSINDPDTFWGEQGKIL 42


>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 640

 Score = 25.2 bits (54), Expect = 4.0
 Identities = 6/25 (24%), Positives = 12/25 (48%)

Query: 50 KAYQEGYNKAIHDRELYWKSKNDFI 74
          + YQ  + ++I D   ++ SK    
Sbjct: 1  QDYQRLHKESIEDPAKFFGSKATQF 25


>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 579

 Score = 25.1 bits (54), Expect = 4.3
 Identities = 5/30 (16%), Positives = 12/30 (40%)

Query: 73  FIQRSHDNEIADLRELFESSTSKAIAIAVR 102
           +   +   EI +L+    +   +    AV+
Sbjct: 3   YFTTNKKGEIFELKAELNNEKKEKRKEAVK 32


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.131    0.363 

Gapped
Lambda     K      H
   0.267   0.0500    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 752,204
Number of extensions: 33458
Number of successful extensions: 94
Number of sequences better than 10.0: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 7
Length of query: 216
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 134
Effective length of database: 1,281,736
Effective search space: 171752624
Effective search space used: 171752624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.0 bits)