HHsearch alignment for GI: 254780531 and conserved domain: PRK08027

>PRK08027 flgL flagellar hook-associated protein FlgL; Reviewed.
Probab=100.00  E-value=0  Score=341.38  Aligned_cols=309  Identities=13%  Similarity=0.151  Sum_probs=226.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             40457999999999999999999999998512236883138999999999999999999999989999999999999999
Q gi|254780531|r    3 SILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGMS   82 (452)
Q Consensus         3 ~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l~   82 (452)
T Consensus         2 RIst~~~~~~~~~~l~~~~~~l~~~q~qlssGk~i~~~SDDP~~~~~~~~l~~~~~~~~qy~~n~~~a~~~l~~~e~~L~   81 (317)
T PRK08027          2 RLSTQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYTLARTFATQKVSLEESVLS   81 (317)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             17669999999999999999999999998607866881019999999999999999999999999999999998999999


Q ss_pred             HHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99999999999875303776---303567889999999999986300121100135666543223343322211123333
Q gi|254780531|r   83 KAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDNG  159 (452)
Q Consensus        83 ~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~~~~~~~~~~  159 (452)
T Consensus        82 ~~~~~l~~~rel~v~a~n~t~~~~~r~a~a~ei~~l~~~l~~~aN~~~~~G~ylF~G~~~~t~Pf~~~~~--~y~-G~~~  158 (317)
T PRK08027         82 QVTTAIQSAQEKIVYAGNGTLSDDDRASLATDLQGLRDQLLNLANTTDGNGRYIFAGYKTEKAPFDEATG--GYV-GGTE  158 (317)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCC--CCC-CCCC
T ss_conf             9999999999999975068998778999999999999999999726476886445887789998406898--723-7876


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             32222222221354333332211111111122333223454433222111122221122222222211111111111101
Q gi|254780531|r  160 KVQITTIDYYLDPETVLLDSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTKKFKLATTSGAWLKAANATF  239 (452)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (452)
T Consensus       159 ~~~~~--------------v~~~~~~~~~~------------~G~~vf--------------------------------  180 (317)
T PRK08027        159 SITQQ--------------VDAARSMVIGH------------TGDQIF--------------------------------  180 (317)
T ss_pred             CEEEE--------------CCCCCEEEECC------------CCHHHH--------------------------------
T ss_conf             64463--------------16763244057------------711555--------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             00112221012333344332222233222221000001223444432110012332111000000001111111122344
Q gi|254780531|r  240 DQAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSDIWVRATTKNSITSDPGYTNSTVAKVGNTHYYVD  319 (452)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (452)
T Consensus       181 --------~~~~~~~~~~---~~~-~----------------~~~~~i--------------------------------  200 (317)
T PRK08027        181 --------DSITSNAVPE---PDG-S----------------ASETNL--------------------------------  200 (317)
T ss_pred             --------HCCCCCCCCC---CCC-C----------------CCCCCH--------------------------------
T ss_conf             --------0266566568---888-8----------------652329--------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             443322322233322222100000122-3344432100000057899999999999999999987899999999999999
Q gi|254780531|r  320 TESTTLDSRKDLPKEIDSGYSMVTLNI-TRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKL  398 (452)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~al~~id~a~~~v~~~ra~iGa~~nrle~~~~~~~~  398 (452)
T Consensus       201 --------------f~~ld~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~a~~~v~~~~a~iG~r~n~le~~~~~~~~  266 (317)
T PRK08027        201 --------------FAMLDTAIAALKTPVAGSDADKETAAAALDKTNRGLKNSLNNVLTVRAELGTQLNELESLDSLGSD  266 (317)
T ss_pred             --------------HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             --------------999999999872745688401568999999999999999999999999998999999999976677


Q ss_pred             HHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999973062220258999999999999999999999999720688987525
Q gi|254780531|r  399 MRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR  451 (452)
Q Consensus       399 ~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~  451 (452)
T Consensus       267 ~~l~~~~~~S~~eD~D~aeaisel~~~q~alqAa~~~faki~~-----lSLfd  314 (317)
T PRK08027        267 RALGQKQQMSDLVDVDWNSAISSYVMQQAALQASYKTFTDMQG-----MSLFQ  314 (317)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCHHH
T ss_conf             9989999987613658999999999999999999999999834-----73987