HHsearch alignment for GI: 254780531 and conserved domain: PRK08027
>PRK08027 flgL flagellar hook-associated protein FlgL; Reviewed.
Probab=100.00 E-value=0 Score=341.38 Aligned_cols=309 Identities=13% Similarity=0.151 Sum_probs=226.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 40457999999999999999999999998512236883138999999999999999999999989999999999999999
Q gi|254780531|r 3 SILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGMS 82 (452)
Q Consensus 3 ~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l~ 82 (452)
T Consensus 2 RIst~~~~~~~~~~l~~~~~~l~~~q~qlssGk~i~~~SDDP~~~~~~~~l~~~~~~~~qy~~n~~~a~~~l~~~e~~L~ 81 (317)
T PRK08027 2 RLSTQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYTLARTFATQKVSLEESVLS 81 (317)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 17669999999999999999999999998607866881019999999999999999999999999999999998999999
Q ss_pred HHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999999875303776---303567889999999999986300121100135666543223343322211123333
Q gi|254780531|r 83 KAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDNG 159 (452)
Q Consensus 83 ~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~~~~~~~~~~ 159 (452)
T Consensus 82 ~~~~~l~~~rel~v~a~n~t~~~~~r~a~a~ei~~l~~~l~~~aN~~~~~G~ylF~G~~~~t~Pf~~~~~--~y~-G~~~ 158 (317)
T PRK08027 82 QVTTAIQSAQEKIVYAGNGTLSDDDRASLATDLQGLRDQLLNLANTTDGNGRYIFAGYKTEKAPFDEATG--GYV-GGTE 158 (317)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCC--CCC-CCCC
T ss_conf 9999999999999975068998778999999999999999999726476886445887789998406898--723-7876
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 32222222221354333332211111111122333223454433222111122221122222222211111111111101
Q gi|254780531|r 160 KVQITTIDYYLDPETVLLDSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTKKFKLATTSGAWLKAANATF 239 (452)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (452)
T Consensus 159 ~~~~~--------------v~~~~~~~~~~------------~G~~vf-------------------------------- 180 (317)
T PRK08027 159 SITQQ--------------VDAARSMVIGH------------TGDQIF-------------------------------- 180 (317)
T ss_pred CEEEE--------------CCCCCEEEECC------------CCHHHH--------------------------------
T ss_conf 64463--------------16763244057------------711555--------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00112221012333344332222233222221000001223444432110012332111000000001111111122344
Q gi|254780531|r 240 DQAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSDIWVRATTKNSITSDPGYTNSTVAKVGNTHYYVD 319 (452)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (452)
T Consensus 181 --------~~~~~~~~~~---~~~-~----------------~~~~~i-------------------------------- 200 (317)
T PRK08027 181 --------DSITSNAVPE---PDG-S----------------ASETNL-------------------------------- 200 (317)
T ss_pred --------HCCCCCCCCC---CCC-C----------------CCCCCH--------------------------------
T ss_conf --------0266566568---888-8----------------652329--------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 443322322233322222100000122-3344432100000057899999999999999999987899999999999999
Q gi|254780531|r 320 TESTTLDSRKDLPKEIDSGYSMVTLNI-TRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKL 398 (452)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~al~~id~a~~~v~~~ra~iGa~~nrle~~~~~~~~ 398 (452)
T Consensus 201 --------------f~~ld~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~a~~~v~~~~a~iG~r~n~le~~~~~~~~ 266 (317)
T PRK08027 201 --------------FAMLDTAIAALKTPVAGSDADKETAAAALDKTNRGLKNSLNNVLTVRAELGTQLNELESLDSLGSD 266 (317)
T ss_pred --------------HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf --------------999999999872745688401568999999999999999999999999998999999999976677
Q ss_pred HHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999973062220258999999999999999999999999720688987525
Q gi|254780531|r 399 MRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR 451 (452)
Q Consensus 399 ~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~ 451 (452)
T Consensus 267 ~~l~~~~~~S~~eD~D~aeaisel~~~q~alqAa~~~faki~~-----lSLfd 314 (317)
T PRK08027 267 RALGQKQQMSDLVDVDWNSAISSYVMQQAALQASYKTFTDMQG-----MSLFQ 314 (317)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCHHH
T ss_conf 9989999987613658999999999999999999999999834-----73987