HHsearch alignment for GI: 254780531 and conserved domain: PRK08073
>PRK08073 flgL flagellar hook-associated protein FlgL; Validated.
Probab=100.00 E-value=0 Score=340.08 Aligned_cols=281 Identities=11% Similarity=0.156 Sum_probs=221.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 40457999999999999999999999998512236883138999999999999999999999989999999999999999
Q gi|254780531|r 3 SILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGMS 82 (452)
Q Consensus 3 ~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l~ 82 (452)
T Consensus 2 RItt~~~~~~~l~~l~~~~~~l~~~q~qissGkki~~~sDDP~~~~~~~~l~~~~~~~~qy~~N~~~a~~~l~~~e~aL~ 81 (287)
T PRK08073 2 RVSTFQNANWAKNQLMDLNVQQQYHRNQVTSGKKNLSMSEDPLAASKSFAIQHSLANIEQMQKDVADSKNVLTQTENTLS 81 (287)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 06629999999999999999999999998538867980008999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999999999998753037763---03567889999999999986300121100135666543223343322211123333
Q gi|254780531|r 83 KAIDVMSTIKNKITAGVERGT---DSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDNG 159 (452)
Q Consensus 83 ~~~~~l~r~relavqa~n~~~---dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~~~~~~~~~~ 159 (452)
T Consensus 82 ~~~~~l~r~~el~vqa~ngt~s~~dr~aia~Ei~~l~~~l~~~aNt-~~~G~ylF~G~~~~~~pf~~d~---ty~G---- 153 (287)
T PRK08073 82 GVSKSLTRVDQLVLQALNGTNDEKELKAIGAEIDQILKQVVYLANT-KEQGRYIFGGDSAEKKPFTEDG---TYQG---- 153 (287)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCEECCCCCCCCCCCCCCC---CCCC----
T ss_conf 9999999999999987168999999999999999999999998527-5478310068656778601455---5437----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 32222222221354333332211111111122333223454433222111122221122222222211111111111101
Q gi|254780531|r 160 KVQITTIDYYLDPETVLLDSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTKKFKLATTSGAWLKAANATF 239 (452)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (452)
T Consensus 154 ------------------------------~~~~~~~~i~~----~---------~~v---------------------- 168 (287)
T PRK08073 154 ------------------------------GTNDVNWRLND----G---------YEV---------------------- 168 (287)
T ss_pred ------------------------------CCCCEEEECCC----C---------EEE----------------------
T ss_conf ------------------------------77660354167----6---------257----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00112221012333344332222233222221000001223444432110012332111000000001111111122344
Q gi|254780531|r 240 DQAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSDIWVRATTKNSITSDPGYTNSTVAKVGNTHYYVD 319 (452)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (452)
T Consensus 169 ---------~~~----------~~---------------------g~~~~--------~--------------------~ 180 (287)
T PRK08073 169 ---------KAF----------RN---------------------GEALL--------T--------------------P 180 (287)
T ss_pred ---------EEE----------CC---------------------CHHHH--------H--------------------H
T ss_conf ---------730----------36---------------------21676--------7--------------------8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44332232223332222210000012233444321000000578999999999999999999878999999999999999
Q gi|254780531|r 320 TESTTLDSRKDLPKEIDSGYSMVTLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKLM 399 (452)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~id~a~~~v~~~ra~iGa~~nrle~~~~~~~~~ 399 (452)
T Consensus 181 -----------------~~~~-----l~~l~~al~~~d~~~~~~~l~~~~~~~d~v~~~~a~vGar~nrle~~~~~~~~~ 238 (287)
T PRK08073 181 -----------------VIKT-----LKKMSDAMQKGDQKALQPLLEENKKNLDGIINRTTEVGSTMNTVETFKTILSEQ 238 (287)
T ss_pred -----------------HHHH-----HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -----------------9999-----999999875777878999999999999999999999989999999999888889
Q ss_pred HHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999973062220258999999999999999999999999720688987525
Q gi|254780531|r 400 RDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR 451 (452)
Q Consensus 400 ~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~ 451 (452)
T Consensus 239 ~~~l~~~~S~ieD~D~Aeai~~l~~~~~~lqAal~~~aki~q-----~SL~d 285 (287)
T PRK08073 239 NLALQENRKEIEDVDLAVAISDLAYINATYEATLKAVSTMSK-----TSILD 285 (287)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCHHH
T ss_conf 999999887755546999999999999999999999998705-----51762