HHsearch alignment for GI: 254780531 and conserved domain: PRK08870
>PRK08870 flgL flagellar hook-associated protein FlgL; Reviewed.
Probab=100.00 E-value=0 Score=414.81 Aligned_cols=396 Identities=16% Similarity=0.138 Sum_probs=235.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 40457999999999999999999999998512236883138999999999999999999999989999999999999999
Q gi|254780531|r 3 SILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGMS 82 (452)
Q Consensus 3 ~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l~ 82 (452)
T Consensus 2 RIst~~~~~~~~~~l~~~~~~l~~~~eqlSTGkrI~~~sDDp~~~~~~~~l~~~~~~l~q~~~N~~~~~s~l~~ad~aL~ 81 (403)
T PRK08870 2 RISTAQMYQQSVNSMLDQQAKLSQLQQQLSSGKKLLTPSDDPVAAAQAVNLSQESALLDQYTKNINLARNRLQQEESTLG 81 (403)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 56569999999999999999999999997406864882138999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999999999998753037763---03567889999999999986300121100135666543223343322211123333
Q gi|254780531|r 83 KAIDVMSTIKNKITAGVERGT---DSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDNG 159 (452)
Q Consensus 83 ~~~~~l~r~relavqa~n~~~---dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~~~~~~~~~~ 159 (452)
T Consensus 82 ~~~~il~r~relavqaangt~~~~dr~ai~~E~~~l~~~i~~iaNt~~~~G~~lF~G~~~~t~pf~~~~~g~~~y~Gd~~ 161 (403)
T PRK08870 82 SVEDLLQRARELVVQAGNGSLSDSDRQAIATELQGLRDQLLSLANSKDESGNYLFAGTQSGTQPFAFDASGNVVYSGDSG 161 (403)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCEEEECCCCCEEEECCCC
T ss_conf 99999999999999862467870569999999999999999998405546612204666666404434887458605765
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCC
Q ss_conf 322222222213543333322111111111223332234544332221111222211222222-2221111111111110
Q gi|254780531|r 160 KVQITTIDYYLDPETVLLDSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTKKF-KLATTSGAWLKAANAT 238 (452)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 238 (452)
T Consensus 162 ~~~~~v~~~~--------------~v~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (403)
T PRK08870 162 QRQVQVADSV--------------TVATNDPGDEVFMSVPNGFGDYVPAAYAANTGSGLLVSVAKTTPSAPTNGDTYTIT 227 (403)
T ss_pred CEEEEECCCC--------------EEEECCCHHHHHHHCCCCCCCEEECCCCCCCCCCEEEEEEECCCCCCCCCCCEEEE
T ss_conf 2468741550--------------46504745777641346765201022234455532431010045555667634899
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 10011222101233334433222223322222100000122344443211001233211100000000111111112234
Q gi|254780531|r 239 FDQAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSDIWVRATTKNSITSDPGYTNSTVAKVGNTHYYV 318 (452)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (452)
T Consensus 228 ~~~~~~~~~~~i~~~~~~~~~---------------------------~~~~~~~~~~~~~----~~~~~~~~g---~~~ 273 (403)
T PRK08870 228 FGDTAGAPTYEVTDSSTGTVV---------------------------TAQAYDAGQPINF----NGVEVQISG---APA 273 (403)
T ss_pred EECCCCCCEEEEECCCCCCCC---------------------------CCCCCCCCCCEEE----CCEEEEEEC---CCC
T ss_conf 831577513898505665312---------------------------3444456761230----554899703---546
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44433223222333222221000001223344432100000057899999999999999999987899999999999999
Q gi|254780531|r 319 DTESTTLDSRKDLPKEIDSGYSMVTLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKL 398 (452)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~id~a~~~v~~~ra~iGa~~nrle~~~~~~~~ 398 (452)
T Consensus 274 ~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~id~a~~~v~~~ra~lGa~~nrle~~~~~l~~ 353 (403)
T PRK08870 274 AGDSFTLTPAAGVSIFDTLDDAIAALESPVDNSVSDAALQNELAQALTNLDNALNNVLTARASVGARLNELESYEAVHED 353 (403)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 66427851476531998999999986366776431055688999999999999999999999985999999999988888
Q ss_pred HHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999973062220258999999999999999999999999720688987525
Q gi|254780531|r 399 MRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR 451 (452)
Q Consensus 399 ~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~ 451 (452)
T Consensus 354 ~~~~l~~~~S~i~DaD~ae~~t~l~~~q~~~qAa~~~~aqi~q-----~SL~d 401 (403)
T PRK08870 354 NKLVNTSALSSLEDLDYASAISEFEKQQAALQAAQQAFSKVQS-----LSLFN 401 (403)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCHHH
T ss_conf 9999999876512547999999999999999999999998834-----51762