HHsearch alignment for GI: 254780531 and conserved domain: PRK12584
>PRK12584 flagellin A; Reviewed.
Probab=100.00 E-value=0 Score=497.36 Aligned_cols=448 Identities=16% Similarity=0.167 Sum_probs=243.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 74045799999999999999999999999851223688313899999999999999999999998999999999999999
Q gi|254780531|r 2 TSILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGM 81 (452)
Q Consensus 2 ~~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l 81 (452)
T Consensus 3 ~~INtNi~Alna~~~L~~~~~~ls~sleRLSSGlRIN~AaDDAAGlaIserm~sQI~gL~qA~rNa~DgiSliQTAEGAL 82 (510)
T PRK12584 3 FQVNTNINAMNAHVQSALTQNALKTSLERLSSGLRINKAADDASGMTVADSLRSQASSLGQAIANTNDGMGIIQVADKAM 82 (510)
T ss_pred CEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 37965599999999999989999999987533266466430666889999999999889999884887999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999999999999875303776---30356788999999999998630012110013566654322334332221112333
Q gi|254780531|r 82 SKAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDN 158 (452)
Q Consensus 82 ~~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~~~~~~~~~ 158 (452)
T Consensus 83 ~ev~~iLqRmRELAVQAAN~tns~~dR~aiQ~Ei~qL~~EIdRIa~~T~FNg~~LLdGs~~~~~~qvGa~~~~~i~~~i~ 162 (510)
T PRK12584 83 DEQLKILDTVKVKATQAAQDGQTTESRKAIQSDIVRLIQGLDNIGNTTTYNGQALLSGQFTNKEFQVGAYSNQSIKASIG 162 (510)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEECCEECCCCCCCCCEEEECCCCCCEEEEECC
T ss_conf 99999999999999986038898889999999999999998566231657888622677787307755788855887435
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC--------CCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCCCCC
Q ss_conf 33222222222135433333221--------1111111122333223454433-------22211112222112222222
Q gi|254780531|r 159 GKVQITTIDYYLDPETVLLDSST--------DGTERYGLLDRNHKIKVEPQVL-------KDIDVSVYDASGTISTKKFK 223 (452)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 223 (452)
T Consensus 163 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~dg~~~~t~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 242 (510)
T PRK12584 163 STTSDKIGQVRIATGALITASGDISLTFKQVDGVNDVTLESVKVSSSAGTGIGVLAEVINKNSNRTGVKAYASVITTSDV 242 (510)
T ss_pred CCCCCCCCCEEEECCCEEECCCCEEEEEECCCCCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEECCC
T ss_conf 45454444234302531211440355542135644201200466404675136788765134544330456777740221
Q ss_pred CCCCCCC-CCCCCCCCCCC----CC--CCCCCCCCCC---CCCCCCCCCCCCCCCCCCCHHC-----CCCCCCCCCCCCC
Q ss_conf 2211111-11111110100----11--2221012333---3443322222332222210000-----0122344443211
Q gi|254780531|r 224 LATTSGA-WLKAANATFDQ----AK--GIATIPVPLP---AAPAAPNTTSGTSGSKSPSVAA-----SATYIRMGNSDIW 288 (452)
Q Consensus 224 ~~~~~~~-~~~~~~~~~~~----~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 288 (452)
T Consensus 243 ~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~tg~~a~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~ 322 (510)
T PRK12584 243 AVQSGSLSNLTLNGIHLGNIADIKKNDSDGRLVAAINAVTSETGVEAYTDQKGRLNLRSTDGRGIEIKTDSVSNGPSALT 322 (510)
T ss_pred EECCCCCEEEEECCEEEEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCEEE
T ss_conf 00135310232034133101110135651467765312234543168851567167763157524875124445642157
Q ss_pred CCCC-----CCCCCCCCC------CCCCCCCCCCCCC--CCCCCCCCCC-------------CCCCCCCCCCCCCCCCCC
Q ss_conf 0012-----332111000------0000011111111--2234444332-------------232223332222210000
Q gi|254780531|r 289 VRAT-----TKNSITSDP------GYTNSTVAKVGNT--HYYVDTESTT-------------LDSRKDLPKEIDSGYSMV 342 (452)
Q Consensus 289 ~~~~-----~~~~~~~~~------~~~~~~~~~~~~~--~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~ 342 (452)
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 401 (510)
T PRK12584 323 MVNGGQDLTKGSTNYGRLSLTRLDAKSINVVSASDSQHLGFTAIGFGESQVAETTVNLRDVTGNFNANVKSASGA-NYNA 401 (510)
T ss_pred EECCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCEEEECCCCCCEEEEEEECCCCCCCCCCCHHHHCCC-CCCC
T ss_conf 741541002343332303665314532134421444433203202565420234431122355434320110255-5321
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHH
Q ss_conf 01223344432100000057899999999999999999987899999999999999999999730622202589999999
Q gi|254780531|r 343 TLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRL 422 (452)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~al~~id~a~~~v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l 422 (452)
T Consensus 402 ~~~~~~~~~~~~v~t~~~A~~ai~~iD~AI~~V~~~Ra~LGA~QNRLe~ti~NL~~~~eNltaA~SrI~DaD~A~Ema~~ 481 (510)
T PRK12584 402 VIASGNQSLGSGVTTLRGAMVVIDIAESAMKMLDKVRSDLGSVQNQMISTVNNISITQVNVKAAESQIRDVDFAEESANF 481 (510)
T ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 00135542355543377799999999999999999997664899989999988999999999998889853089999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999972068898752
Q gi|254780531|r 423 SALQTQQQLAVQALSIVNNSTARILSLF 450 (452)
Q Consensus 423 ~~~q~~~Qaa~~~laqan~~~~~vL~L~ 450 (452)
T Consensus 482 tk~qIL~QAgtamLAQANq~pQ~VL~LL 509 (510)
T PRK12584 482 NKNNILAQSGSYAMSQANTVQQNILRLL 509 (510)
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHCC
T ss_conf 9999999999999998617668898622