HHsearch alignment for GI: 254780531 and conserved domain: PRK12688

>PRK12688 flagellin; Reviewed.
Probab=99.67  E-value=2.1e-15  Score=111.72  Aligned_cols=100  Identities=21%  Similarity=0.318  Sum_probs=94.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             97404579999999999999999999999985122368831389999999999999999999999899999999999999
Q gi|254780531|r    1 MTSILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAG   80 (452)
Q Consensus         1 m~~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~   80 (452)
T Consensus         1 MS~IvLS~avRQNLlSLQsTAdLLATTQsRLssGKKVNtALDNPTNFFTAagLdsRaSdInnLLDGI~NGVQilQAANTG   80 (888)
T PRK12688          1 MSGVVLSNAVRQNLSSLQATADLLATTQSRLSSGKKVNTALDNPTNFFTAASLDSRASDINNLLDGIGNGVQILQAANTG   80 (888)
T ss_pred             CCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHCCCHHHHHHHHCCC
T ss_conf             97344178887677777778999988777652366122123687531100123410456777775212255533454036


Q ss_pred             HHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999999998753037
Q gi|254780531|r   81 MSKAIDVMSTIKNKITAGVE  100 (452)
Q Consensus        81 l~~~~~~l~r~relavqa~n  100 (452)
T Consensus        81 ITsL~kLvDsaKSIAnQALq  100 (888)
T PRK12688         81 ITSLNKLVDSAKSIANQALQ  100 (888)
T ss_pred             CHHHHHHHHHHHHHHHHHHH
T ss_conf             06689999989999998765