HHsearch alignment for GI: 254780531 and conserved domain: PRK12802
>PRK12802 flagellin; Provisional.
Probab=100.00 E-value=0 Score=415.86 Aligned_cols=277 Identities=21% Similarity=0.314 Sum_probs=226.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 74045799999999999999999999999851223688313899999999999999999999998999999999999999
Q gi|254780531|r 2 TSILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGM 81 (452)
Q Consensus 2 ~~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l 81 (452)
T Consensus 3 m~I~tN~~a~~a~~~L~~~~~~l~~s~~rlSSGkri~~~sDDpa~~a~a~~l~s~~~~~~q~~~N~~~a~s~l~~ad~aL 82 (282)
T PRK12802 3 LTVNTNITSLTVQKNLSRASDALSTSMTRLSSGLKINSAKDDAAGLQIATRQTSQIRGQTQAIKNANDGISIAQTAEGAL 82 (282)
T ss_pred EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 17837699999999999999999999998722055167644499999999999999989999988999998999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999999999999875303776---30356788999999999998630012110013566654322334332221112333
Q gi|254780531|r 82 SKAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDN 158 (452)
Q Consensus 82 ~~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~~~~~~~~~ 158 (452)
T Consensus 83 ~~i~~~l~R~reLavqaan~t~s~~dr~ai~~Ei~~L~~qi~~ian~t~fnG~~lf~g~~~~~~~~vg~~~--------- 153 (282)
T PRK12802 83 QESTNILQRMRELAVQSRNDSNDSTDRAALNKEFTTMLDEITRIATSTTLNGKNLLDGSAGTMTFQVGANT--------- 153 (282)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEEEECCCC---------
T ss_conf 99999999999999976237899999999999999999999999874627885300588875578764788---------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 33222222222135433333221111111112233322345443322211112222112222222221111111111110
Q gi|254780531|r 159 GKVQITTIDYYLDPETVLLDSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTKKFKLATTSGAWLKAANAT 238 (452)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (452)
T Consensus 154 --------------------------------------------~~~~---------~~~~~---~~~-----------~ 166 (282)
T PRK12802 154 --------------------------------------------GQSN---------QITFG---LSA-----------S 166 (282)
T ss_pred --------------------------------------------CCEE---------EEEEE---ECC-----------C
T ss_conf --------------------------------------------8604---------78752---012-----------2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 10011222101233334433222223322222100000122344443211001233211100000000111111112234
Q gi|254780531|r 239 FDQAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSDIWVRATTKNSITSDPGYTNSTVAKVGNTHYYV 318 (452)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (452)
T Consensus 167 ~~~~-------------------~~~~--------------------~-------------------------------- 175 (282)
T PRK12802 167 FDAT-------------------GLGV--------------------G-------------------------------- 175 (282)
T ss_pred CCCC-------------------CCCC--------------------C--------------------------------
T ss_conf 3543-------------------4243--------------------2--------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44433223222333222221000001223344432100000057899999999999999999987899999999999999
Q gi|254780531|r 319 DTESTTLDSRKDLPKEIDSGYSMVTLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKL 398 (452)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~id~a~~~v~~~ra~iGa~~nrle~~~~~~~~ 398 (452)
T Consensus 176 --------------------------~~~~~~~~~~~~~~~~~~~~l~~id~ai~~v~~~ra~~Ga~~nrle~~~~~l~~ 229 (282)
T PRK12802 176 --------------------------SGTLITGADSAAAETNAQAAITAIDAALQTINTTRADLGAAQNRLQSTISNLQN 229 (282)
T ss_pred --------------------------HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf --------------------------023312442211054699999999999999999999874998899999988999
Q ss_pred HHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999973062220258999999999999999999999999720688987525
Q gi|254780531|r 399 MRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR 451 (452)
Q Consensus 399 ~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~ 451 (452)
T Consensus 230 ~~~nl~~~~s~i~DaD~A~e~~~l~~~qi~~Qaa~a~laqANq~~q~vl~Llq 282 (282)
T PRK12802 230 INENASAARGRVQDTDFAAETAQLTKQQTLQQASTSVLAQANQLPSAVLKLLQ 282 (282)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999998766660059999999999999999999999999676899998509