HHsearch alignment for GI: 254780531 and conserved domain: PRK12804
>PRK12804 flagellin; Provisional.
Probab=100.00 E-value=0 Score=411.13 Aligned_cols=296 Identities=19% Similarity=0.299 Sum_probs=222.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 40457999999999999999999999998512236883138999999999999999999999989999999999999999
Q gi|254780531|r 3 SILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGMS 82 (452)
Q Consensus 3 ~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l~ 82 (452)
T Consensus 2 rIt~n~~a~~al~~L~~~~~~l~~~q~rLSSGkrI~~asDDpa~~aia~~l~s~~~~~~~~~~N~~~a~s~l~tad~al~ 81 (307)
T PRK12804 2 RINHNIAALNTLNRLSANNGASQKNMEKLSSGLKINRAGDDAAGLAISEKMRGQIRGLEMASKNAQDGISLIQTAEGALT 81 (307)
T ss_pred EEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 56242999999999999999999999985411763774217999999999999999999999989999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCC-C---CCHHHHHHHHHHHHHHHHHHHH------HHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9999999999987530377-6---3035678899999999999863------0012110013566654322334332221
Q gi|254780531|r 83 KAIDVMSTIKNKITAGVER-G---TDSKSIQSEITQLQSQLRDIAR------GSSFNGENWLRTDLGSSTASIAKSVIGS 152 (452)
Q Consensus 83 ~~~~~l~r~relavqa~n~-~---~dr~a~~~e~~~l~~~i~~ian------~t~~nG~~l~~g~~~~~~~~~~~~~~~~ 152 (452)
T Consensus 82 ~~~~il~R~rELavqaaN~Gt~s~~dr~ai~~Ei~~L~~qi~~~~n~~~i~~~t~f~G~~~~~g~~~~~~~~~~~~~~-~ 160 (307)
T PRK12804 82 ETHSILQRVRELVVQAGNTGTQDGTDLGAIQEEIKALVDEIGNGTDKNGISDRTEFNGKKLLDGTFKPAAPAAGTKSL-T 160 (307)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCEEECCCCCCCCCCCCCCCCE-E
T ss_conf 999999999999998536777888899999999999999997430334023104207876125665456767777616-9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11233333222222222135433333221111111112233322345443322211112222112222222221111111
Q gi|254780531|r 153 FIRDDNGKVQITTIDYYLDPETVLLDSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTKKFKLATTSGAWL 232 (452)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (452)
T Consensus 161 ~~~--------------------------------g~---------~~--~~~~---------~v~~~~~~~~------- 181 (307)
T PRK12804 161 FQI--------------------------------GA---------NA--AQQL---------SVNIEAMSAD------- 181 (307)
T ss_pred EEE--------------------------------CC---------CC--CCEE---------EEEEEECCCH-------
T ss_conf 985--------------------------------47---------77--6437---------8875423302-------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11111010011222101233334433222223322222100000122344443211001233211100000000111111
Q gi|254780531|r 233 KAANATFDQAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSDIWVRATTKNSITSDPGYTNSTVAKVG 312 (452)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (452)
T Consensus 182 -----------------------------~~~~~~~~~~~~----~~--------------------------------- 195 (307)
T PRK12804 182 -----------------------------ALGVKDADGTLV----TG--------------------------------- 195 (307)
T ss_pred -----------------------------HHCCCCCCCCCC----CC---------------------------------
T ss_conf -----------------------------313555554212----34---------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11223444433223222333222221000001223344432100000057899999999999999999987899999999
Q gi|254780531|r 313 NTHYYVDTESTTLDSRKDLPKEIDSGYSMVTLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQ 392 (452)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~id~a~~~v~~~ra~iGa~~nrle~~ 392 (452)
T Consensus 196 -------~-------------------~~~~~~~~-~~~~~~~~~~~~~~~~l~~id~al~~v~~~ra~lGA~~nrle~~ 248 (307)
T PRK12804 196 -------K-------------------SVSDIDVT-KFADIAADADGGFDDQLDIVDGAIKQVSDQRSKLGAVQNRLEHT 248 (307)
T ss_pred -------C-------------------CCCHHHHH-HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -------2-------------------10000223-32000110010078899999999999999998868999999999
Q ss_pred HHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999973062220258999999999999999999999999720688987525
Q gi|254780531|r 393 EDFIKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR 451 (452)
Q Consensus 393 ~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~ 451 (452)
T Consensus 249 ~~~l~~~~~nl~~~~s~i~DaD~A~e~~~l~~~qi~~Qaa~a~laqAN~~~q~~L~Ll~ 307 (307)
T PRK12804 249 INNLGASSENLTAAESRIRDVDMAKEMSEFTKNNILSQASQAMLAQANQQPQNVLQLLR 307 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 98899999999998743560069999999999999999999999998266899998519