HHsearch alignment for GI: 254780531 and conserved domain: PRK12808
>PRK12808 flagellin; Provisional.
Probab=100.00 E-value=0 Score=501.31 Aligned_cols=443 Identities=16% Similarity=0.157 Sum_probs=240.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 40457999999999999999999999998512236883138999999999999999999999989999999999999999
Q gi|254780531|r 3 SILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGMS 82 (452)
Q Consensus 3 ~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l~ 82 (452)
T Consensus 2 ~IntN~~Al~a~~~L~~~~~~l~~s~eRLSSG~RIN~A~DdAAGlaIs~rm~sqi~gl~qa~~Na~dgiS~~qtAEgal~ 81 (460)
T PRK12808 2 RINTNINSMRTQEYMRQNQAKMSNAMDRLSSGKRINNASDDAAGLAIATRMRARESGLGVAANNTQDGMSLIRTADSAMN 81 (460)
T ss_pred EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 66446999999999999999999999985011652664102889999999999998899999989989999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC-CCC
Q ss_conf 99999999999875303776---30356788999999999998630012110013566654322334332221112-333
Q gi|254780531|r 83 KAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIR-DDN 158 (452)
Q Consensus 83 ~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~~~~~~-~~~ 158 (452)
T Consensus 82 ev~~iLqRmReLAVQAANgTns~~DR~aiQ~Ei~qL~~EIdrIa~~T~fNg~~LLdGs~~~~~~~~~~~~~~~~~i~i~~ 161 (460)
T PRK12808 82 SVSNILLRMRDLANQSANGTNTDKNQAALQKEFAELQKQIDYIADNTQFNDKNLLDGSNSSIAIQTLDSSDGGKQIGIDL 161 (460)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEECCCCCCCEEEEEC
T ss_conf 99999999999999861566887889999999999999999998738568876005778750267412678760686412
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 33222222222135433333221111111112233322345443322211112222112222222221111111111110
Q gi|254780531|r 159 GKVQITTIDYYLDPETVLLDSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTKKFKLATTSGAWLKAANAT 238 (452)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (452)
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (460)
T PRK12808 162 KSASLEALGINNLSIGANGNGLAKATELAGVADDT-AANASA----AAAKKIDDTTGDTDVKRDAAKVKAYTKQYKALKA 236 (460)
T ss_pred CCCCHHHCCCCCCEECCCCCCCCCEEEEECCCCCC-CCCCCH----HHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 32320102555300013233333112420201321-133311----1201013333432002333211000001121000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC-----------CCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCC
Q ss_conf 10011222101233334433222-----------22332222210000012234444321100123321110-0000000
Q gi|254780531|r 239 FDQAKGIATIPVPLPAAPAAPNT-----------TSGTSGSKSPSVAASATYIRMGNSDIWVRATTKNSITS-DPGYTNS 306 (452)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 306 (452)
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (460)
T PRK12808 237 ALDAKDTGLIDDAKKLVDGANTLLNAQAIKKAEETAAKATLTTDITAATLVDKYSDAKSDATTDTRAKAYLDAKAAYDKV 316 (460)
T ss_pred CCCCCCCCCCCCCHHCCCCCCEEEECCCCCCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHEECCC
T ss_conf 02441111123201101332102102233210000011222444421011002223444344543000000000000023
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11111111223444433223222333222221000001223344432100000057899999999999999999987899
Q gi|254780531|r 307 TVAKVGNTHYYVDTESTTLDSRKDLPKEIDSGYSMVTLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSIS 386 (452)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~id~a~~~v~~~ra~iGa~~ 386 (452)
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~t~~~A~~Ai~~ID~AI~~v~~~Ra~lGA~q 395 (460)
T PRK12808 317 KGSMNSKDVTKLSAAIDRFSKDDASGDAAEV-LVAKGDAAKAATTNGTTSTATDSLSAVKAIDEALKTIADNRATLGATL 395 (460)
T ss_pred CCCCCCCCCEEECCHHCCCCCCCCCCHHHHH-HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5654432110110101010124555214555-665212100122454421155599999999999999999999881899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999999973062220258999999999999999999999999720688987525
Q gi|254780531|r 387 SRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR 451 (452)
Q Consensus 387 nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~ 451 (452)
T Consensus 396 NRLe~~i~nL~~~~eN~~aa~SrI~DaDmA~E~a~ltk~qILqQAgtamLAQANq~pq~vL~LLq 460 (460)
T PRK12808 396 NRLDFNVNNLKSQSSSMASAASQIEDADMAKEMSEMTKFKILNEAGISMLSQANQTPQMVSKLLQ 460 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC
T ss_conf 99999999999999999997667660659999999999999999999999996517478998419