HHsearch alignment for GI: 254780531 and conserved domain: PRK12808

>PRK12808 flagellin; Provisional.
Probab=100.00  E-value=0  Score=501.31  Aligned_cols=443  Identities=16%  Similarity=0.157  Sum_probs=240.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             40457999999999999999999999998512236883138999999999999999999999989999999999999999
Q gi|254780531|r    3 SILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGMS   82 (452)
Q Consensus         3 ~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l~   82 (452)
T Consensus         2 ~IntN~~Al~a~~~L~~~~~~l~~s~eRLSSG~RIN~A~DdAAGlaIs~rm~sqi~gl~qa~~Na~dgiS~~qtAEgal~   81 (460)
T PRK12808          2 RINTNINSMRTQEYMRQNQAKMSNAMDRLSSGKRINNASDDAAGLAIATRMRARESGLGVAANNTQDGMSLIRTADSAMN   81 (460)
T ss_pred             EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             66446999999999999999999999985011652664102889999999999998899999989989999999999999


Q ss_pred             HHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC-CCC
Q ss_conf             99999999999875303776---30356788999999999998630012110013566654322334332221112-333
Q gi|254780531|r   83 KAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIR-DDN  158 (452)
Q Consensus        83 ~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~~~~~~-~~~  158 (452)
T Consensus        82 ev~~iLqRmReLAVQAANgTns~~DR~aiQ~Ei~qL~~EIdrIa~~T~fNg~~LLdGs~~~~~~~~~~~~~~~~~i~i~~  161 (460)
T PRK12808         82 SVSNILLRMRDLANQSANGTNTDKNQAALQKEFAELQKQIDYIADNTQFNDKNLLDGSNSSIAIQTLDSSDGGKQIGIDL  161 (460)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEECCCCCCCEEEEEC
T ss_conf             99999999999999861566887889999999999999999998738568876005778750267412678760686412


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             33222222222135433333221111111112233322345443322211112222112222222221111111111110
Q gi|254780531|r  159 GKVQITTIDYYLDPETVLLDSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTKKFKLATTSGAWLKAANAT  238 (452)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (452)
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (460)
T PRK12808        162 KSASLEALGINNLSIGANGNGLAKATELAGVADDT-AANASA----AAAKKIDDTTGDTDVKRDAAKVKAYTKQYKALKA  236 (460)
T ss_pred             CCCCHHHCCCCCCEECCCCCCCCCEEEEECCCCCC-CCCCCH----HHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             32320102555300013233333112420201321-133311----1201013333432002333211000001121000


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCC-----------CCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCC
Q ss_conf             10011222101233334433222-----------22332222210000012234444321100123321110-0000000
Q gi|254780531|r  239 FDQAKGIATIPVPLPAAPAAPNT-----------TSGTSGSKSPSVAASATYIRMGNSDIWVRATTKNSITS-DPGYTNS  306 (452)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  306 (452)
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (460)
T PRK12808        237 ALDAKDTGLIDDAKKLVDGANTLLNAQAIKKAEETAAKATLTTDITAATLVDKYSDAKSDATTDTRAKAYLDAKAAYDKV  316 (460)
T ss_pred             CCCCCCCCCCCCCHHCCCCCCEEEECCCCCCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHEECCC
T ss_conf             02441111123201101332102102233210000011222444421011002223444344543000000000000023


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             11111111223444433223222333222221000001223344432100000057899999999999999999987899
Q gi|254780531|r  307 TVAKVGNTHYYVDTESTTLDSRKDLPKEIDSGYSMVTLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSIS  386 (452)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~id~a~~~v~~~ra~iGa~~  386 (452)
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~t~~~A~~Ai~~ID~AI~~v~~~Ra~lGA~q  395 (460)
T PRK12808        317 KGSMNSKDVTKLSAAIDRFSKDDASGDAAEV-LVAKGDAAKAATTNGTTSTATDSLSAVKAIDEALKTIADNRATLGATL  395 (460)
T ss_pred             CCCCCCCCCEEECCHHCCCCCCCCCCHHHHH-HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             5654432110110101010124555214555-665212100122454421155599999999999999999999881899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999999999999999973062220258999999999999999999999999720688987525
Q gi|254780531|r  387 SRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR  451 (452)
Q Consensus       387 nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~  451 (452)
T Consensus       396 NRLe~~i~nL~~~~eN~~aa~SrI~DaDmA~E~a~ltk~qILqQAgtamLAQANq~pq~vL~LLq  460 (460)
T PRK12808        396 NRLDFNVNNLKSQSSSMASAASQIEDADMAKEMSEMTKFKILNEAGISMLSQANQTPQMVSKLLQ  460 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC
T ss_conf             99999999999999999997667660659999999999999999999999996517478998419