Query         gi|254780531|ref|YP_003064944.1| flagellin domain-containing protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 452
No_of_seqs    143 out of 3473
Neff          12.3
Searched_HMMs 39220
Date          Sun May 29 23:06:01 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780531.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK08026 flagellin; Validated  100.0       0       0  506.0  32.5  144    2-146     3-149 (566)
  2 PRK13588 flagellin B; Provisio 100.0       0       0  506.1  32.3  449    2-451     3-514 (514)
  3 PRK12808 flagellin; Provisiona 100.0       0       0  501.3  32.9  443    3-451     2-460 (460)
  4 PRK08411 flagellin; Reviewed   100.0       0       0  498.9  31.8  149    2-150     3-154 (573)
  5 PRK13589 flagellin; Provisiona 100.0       0       0  499.0  31.1  149    2-150     3-154 (573)
  6 PRK12584 flagellin A; Reviewed 100.0       0       0  497.4  30.4  448    2-450     3-509 (510)
  7 PRK12806 flagellin; Provisiona 100.0       0       0  491.5  32.6  445    2-451     3-474 (475)
  8 PRK06819 flagellin; Validated  100.0       0       0  487.7  32.1  368    1-451     1-371 (371)
  9 PRK08869 flagellin; Reviewed   100.0       0       0  479.7  31.4  373    1-451     2-377 (377)
 10 PRK12803 flagellin; Provisiona 100.0       0       0  465.4  30.0  331    3-451     2-335 (335)
 11 PRK12717 flgL flagellar hook-a 100.0       0       0  459.8  31.9  146    3-148     2-150 (523)
 12 PRK12807 flagellin; Provisiona 100.0       0       0  423.3  30.0  283    3-451     2-287 (287)
 13 PRK12805 flagellin; Provisiona 100.0       0       0  422.8  29.8  282    3-451     2-286 (287)
 14 PRK06663 flagellar hook-associ 100.0       0       0  419.2  31.9  413    1-451     2-417 (420)
 15 PRK08870 flgL flagellar hook-a 100.0       0       0  414.8  31.3  396    3-451     2-401 (403)
 16 PRK12687 flagellin; Reviewed   100.0       0       0  416.1  29.9  307    1-451     1-311 (311)
 17 PRK12802 flagellin; Provisiona 100.0       0       0  415.9  29.5  277    2-451     3-282 (282)
 18 PRK12804 flagellin; Provisiona 100.0       0       0  411.1  30.0  296    3-451     2-307 (307)
 19 COG1344 FlgL Flagellin and rel 100.0       0       0  394.4  32.4  352    2-451     1-360 (360)
 20 PRK12718 flgL flagellar hook-a 100.0       0       0  383.3  32.5  147    3-149     2-151 (510)
 21 PRK07192 flgL flagellar hook-a 100.0       0       0  365.6  28.2  299    3-451     2-303 (305)
 22 PRK07701 flgL flagellar hook-a 100.0       0       0  365.1  27.2  294    3-451     2-298 (301)
 23 PRK08027 flgL flagellar hook-a 100.0       0       0  341.4  29.0  309    3-451     2-314 (317)
 24 PRK08073 flgL flagellar hook-a 100.0       0       0  340.1  27.2  281    3-451     2-285 (287)
 25 PRK08913 flgL flagellar hook-a 100.0       0       0  303.2  28.1  298    1-451     2-300 (302)
 26 PRK08412 flgL flagellar hook-a 100.0 1.4E-45       0  298.0  29.9  142    3-145     2-146 (777)
 27 TIGR02550 flagell_flgL flagell 100.0 2.7E-36 6.8E-41  239.5  24.4  384    3-451     1-391 (393)
 28 pfam00669 Flagellin_N Bacteria 100.0 2.2E-36 5.7E-41  240.0  16.9  135    4-138     1-138 (139)
 29 PRK06008 flgL flagellar hook-a 100.0 8.5E-34 2.2E-38  224.2  28.7  343    2-451     4-346 (348)
 30 pfam07164 consensus            100.0 6.9E-33 1.8E-37  218.7  28.5  342    2-451     4-345 (347)
 31 pfam00700 Flagellin_C Bacteria  99.8 2.5E-20 6.3E-25  141.9  10.0   82  365-451     1-82  (84)
 32 PRK12688 flagellin; Reviewed    99.7 2.1E-15 5.5E-20  111.7  13.2  100    1-100     1-100 (888)
 33 PRK08471 flgK flagellar hook-a  97.8  0.0019 4.7E-08   38.7  26.2   79  373-451   534-612 (612)
 34 PRK07521 flgK flagellar hook-a  97.6  0.0046 1.2E-07   36.3  26.2   78  374-451   405-482 (482)
 35 PRK08147 flgK flagellar hook-a  97.6  0.0047 1.2E-07   36.3  26.9   77  373-449   470-546 (547)
 36 PRK12714 flgK flagellar hook-a  97.5  0.0067 1.7E-07   35.3  30.6   79  373-451   546-624 (624)
 37 PRK07191 flgK flagellar hook-a  97.0    0.02 5.2E-07   32.4  24.1   76  374-449   380-455 (456)
 38 PRK06945 flgK flagellar hook-a  96.9   0.024 6.2E-07   31.9  30.8   79  372-450   571-649 (649)
 39 PRK06665 flgK flagellar hook-a  96.6   0.042 1.1E-06   30.4  29.1   77  372-448   548-624 (628)
 40 TIGR02492 flgK_ends flagellar   96.5    0.05 1.3E-06   30.0  10.0   80  370-449   416-495 (495)
 41 PRK07739 flgK flagellar hook-a  96.4   0.057 1.4E-06   29.7  25.6   74  374-447   419-492 (500)
 42 COG1256 FlgK Flagellar hook-as  95.7    0.12   3E-06   27.7  22.9   81  371-451   472-552 (552)
 43 PRK06799 flgK flagellar hook-a  94.9    0.22 5.6E-06   26.0  21.8   75  376-450   357-431 (431)
 44 PRK12715 flgK flagellar hook-a  93.5    0.44 1.1E-05   24.2  32.2   80  372-451   570-649 (649)
 45 PRK08871 flgK flagellar hook-a  92.8    0.56 1.4E-05   23.6  28.5   77  373-449   549-625 (626)
 46 PRK12632 flgC flagellar basal   92.8    0.32 8.2E-06   25.0   5.6   43  409-451    87-129 (130)
 47 PRK12782 flgC flagellar basal   92.0    0.47 1.2E-05   24.1   5.5   47  405-451    91-137 (138)
 48 PRK05681 flgC flagellar basal   91.8    0.53 1.4E-05   23.7   5.7   47  406-452    93-139 (139)
 49 PRK12631 flgC flagellar basal   88.7     1.3 3.3E-05   21.3   5.5   46  406-451    93-138 (138)
 50 PRK12629 flgC flagellar basal   88.6     1.3 3.4E-05   21.2   5.5   47  405-451    89-135 (135)
 51 PRK12624 flgB flagellar basal   88.4     1.2   3E-05   21.6   5.1   37  412-448   105-141 (143)
 52 PRK12622 flgB flagellar basal   88.3     1.1 2.9E-05   21.7   5.0   37  411-447    98-134 (135)
 53 PRK06797 flgB flagellar basal   88.0    0.72 1.8E-05   22.9   3.8   26  413-438    99-124 (135)
 54 PRK12630 flgC flagellar basal   87.5     1.6 4.2E-05   20.7   5.5   46  406-451    98-143 (143)
 55 PRK05683 flgK flagellar hook-a  86.9     1.8 4.5E-05   20.5  30.9   76  373-448   599-674 (676)
 56 PRK12621 flgB flagellar basal   85.7       2 5.2E-05   20.2   5.3   35  413-447    97-131 (136)
 57 PRK05680 flgB flagellar basal   84.9     2.2 5.6E-05   19.9   5.3   35  412-446    98-132 (137)
 58 pfam06429 DUF1078 Domain of un  84.1     2.4 6.1E-05   19.7   5.0   38  412-449     2-39  (39)
 59 PRK12619 flgB flagellar basal   83.2     2.6 6.7E-05   19.5   5.0   30  413-442    93-122 (130)
 60 PRK12623 flgB flagellar basal   83.2     2.6 6.7E-05   19.5   4.9   35  412-446    95-129 (131)
 61 PRK12625 flgB flagellar basal   83.0     2.7 6.8E-05   19.4   5.0   31  413-443    95-125 (132)
 62 PRK12692 flgG flagellar basal   82.7     2.7   7E-05   19.4   5.5   40  412-451   223-262 (262)
 63 PRK12685 flgB flagellar basal   79.3     3.6 9.2E-05   18.6   5.0   37  411-447    77-113 (116)
 64 PRK12691 flgG flagellar basal   79.0     3.7 9.3E-05   18.6   5.5   40  412-451   223-262 (262)
 65 PRK07182 flgB flagellar basal   78.8     3.7 9.5E-05   18.6   5.0   37  413-452   111-147 (148)
 66 PRK06004 flgB flagellar basal   77.5     3.7 9.6E-05   18.5   4.0   29  411-439    87-115 (126)
 67 COG1815 FlgB Flagellar basal b  77.0     4.2 0.00011   18.2   5.1   37  413-452    96-132 (133)
 68 PRK06802 flgC flagellar basal   75.9     4.5 0.00011   18.0   5.5   47  405-451    94-140 (141)
 69 PRK12620 flgB flagellar basal   75.6     4.6 0.00012   18.0   5.0   34  413-446    95-128 (132)
 70 PRK12626 flgB flagellar basal   75.1     4.7 0.00012   17.9   5.2   25  413-437   124-148 (162)
 71 PRK12628 flgC flagellar basal   72.5     5.5 0.00014   17.5   5.3   42  408-449    97-138 (140)
 72 PRK12636 flgG flagellar basal   67.4       7 0.00018   16.9   5.5   40  412-451   224-263 (263)
 73 PRK12627 flgB flagellar basal   59.6     9.8 0.00025   16.0   5.2   30  412-441    90-119 (128)
 74 TIGR01395 FlgC flagellar basal  59.4     9.9 0.00025   16.0   3.8   41  411-451   107-147 (147)
 75 PRK12693 flgG flagellar basal   58.7      10 0.00026   15.9   5.3   39  412-450   223-261 (261)
 76 PRK05682 flgE flagellar hook p  57.4     8.5 0.00022   16.3   2.4   38  412-449   376-413 (414)
 77 PRK12641 flgF flagellar basal   54.4      12 0.00031   15.4   5.6   40  412-451   210-249 (252)
 78 PRK12640 flgF flagellar basal   53.4      12 0.00032   15.3   5.5   40  412-451   205-244 (246)
 79 PRK12694 flgG flagellar basal   51.7      13 0.00034   15.2   4.9   38  412-449   223-260 (260)
 80 COG1558 FlgC Flagellar basal b  51.3      13 0.00034   15.1   5.5   47  405-451    91-137 (137)
 81 PRK06003 flgB flagellar basal   43.5      18 0.00045   14.4   5.2   37  413-452    90-126 (126)
 82 TIGR01146 ATPsyn_F1gamma ATP s  40.4      20 0.00051   14.1   4.6   49  375-423   276-324 (330)
 83 PHA00369 H minor spike protein  39.2      21 0.00053   14.0   2.3   61  382-445   177-237 (337)
 84 pfam04687 Microvir_H Microviru  38.4      21 0.00054   13.9   2.7   60  382-444   165-224 (310)
 85 pfam10498 IFT57 Intra-flagella  37.6      22 0.00056   13.8  13.8   15  415-429   271-285 (355)
 86 PRK12816 flgG flagellar basal   37.4      22 0.00056   13.8   5.4   40  412-451   225-264 (264)
 87 PRK13424 F0F1 ATP synthase sub  35.8      24  0.0006   13.7   5.1   49  375-423   235-283 (291)
 88 PRK05841 flgE flagellar hook p  35.3      20  0.0005   14.1   1.4   40  412-451   566-605 (605)
 89 PRK06664 fliD flagellar hook-a  35.0      24 0.00062   13.6   6.1   74  367-451   606-679 (684)
 90 PRK12642 flgF flagellar basal   35.0      24 0.00062   13.6   5.5   39  412-450   199-237 (241)
 91 PRK13425 F0F1 ATP synthase sub  34.9      24 0.00062   13.6   5.1   49  375-423   235-283 (291)
 92 pfam00231 ATP-synt ATP synthas  32.4      27 0.00068   13.3   5.0   49  375-423   234-282 (288)
 93 PRK12637 flgE flagellar hook p  32.3      20 0.00052   14.0   1.0   38  412-449   435-472 (473)
 94 pfam08898 DUF1843 Domain of un  31.8      27  0.0007   13.3   3.3   39   84-122    12-50  (53)
 95 PRK13422 F0F1 ATP synthase sub  30.4      29 0.00074   13.1   4.8   49  375-423   244-292 (298)
 96 TIGR03323 alt_F1F0_F1_gam alte  28.2      32  0.0008   12.9   5.0   49  375-423   231-279 (285)
 97 COG0224 AtpG F0F1-type ATP syn  26.0      35 0.00088   12.6   4.9   49  375-423   232-280 (287)
 98 PRK13874 conjugal transfer pro  25.6      35  0.0009   12.6   7.2   52   67-118    66-117 (233)
 99 PRK08425 flgE flagellar hook p  24.5      37 0.00094   12.5   1.5   40  412-451   677-716 (716)
100 COG1749 FlgE Flagellar hook pr  24.3      30 0.00076   13.0   0.7   40  412-451   384-423 (423)
101 PRK08032 fliD flagellar cappin  23.1      39   0.001   12.3   6.8   74  366-450   389-462 (463)
102 PRK13423 F0F1 ATP synthase sub  21.1      43  0.0011   12.1   5.0   49  375-423   231-279 (286)
103 PRK05621 F0F1 ATP synthase sub  20.9      43  0.0011   12.0   5.2   49  375-423   233-281 (287)
104 PRK13426 F0F1 ATP synthase sub  20.9      44  0.0011   12.0   5.0   49  375-423   236-284 (289)
105 PRK06803 flgE flagellar hook p  20.5      44  0.0011   12.0   1.6   37  412-448   360-396 (398)
106 PRK13427 F0F1 ATP synthase sub  20.4      45  0.0011   12.0   4.9   49  375-423   231-279 (286)
107 TIGR02916 PEP_his_kin putative  20.2      45  0.0011   11.9   7.9   77   48-124   492-569 (696)

No 1  
>PRK08026 flagellin; Validated
Probab=100.00  E-value=0  Score=505.98  Aligned_cols=144  Identities=24%  Similarity=0.290  Sum_probs=135.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             74045799999999999999999999999851223688313899999999999999999999998999999999999999
Q gi|254780531|r    2 TSILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGM   81 (452)
Q Consensus         2 ~~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l   81 (452)
                      ..||||+.|++++++|.+.+..|.+++||||||+|||+++|||++++++.|||+++.+++|..||.+++++++|++|++|
T Consensus         3 ~~INtNi~Al~a~~~L~~~~~~l~~sleRLSSGlRIN~A~DDAAGlaIs~rm~sQi~GL~qA~rNa~DgiSliQTAEGAL   82 (566)
T PRK08026          3 QVINTNSLSLITQNNINKNQSALSSSIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAARNANDGISVAQTTEGAL   82 (566)
T ss_pred             CEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             37966799999999999999999999997510166466321467899999999999889999986988999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             999999999999875303776---30356788999999999998630012110013566654322334
Q gi|254780531|r   82 SKAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIA  146 (452)
Q Consensus        82 ~~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~  146 (452)
                      +++++||+||||||||++|++   .||++|+.||++|++||++|++.|+|||++||.|+.. ..++.+
T Consensus        83 ~ev~~iLqRmRELAVQAANgTns~~dR~aiQ~Ei~qL~~EIdRIa~~T~FNg~~LL~g~gs-~~~qvG  149 (566)
T PRK08026         83 SEINNNLQRIRELTVQAATGTNSDSDLDSIQDEIKSRLDEIDRVSGQTQFNGVNVLAKDGS-MKIQVG  149 (566)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCC-EEEEEC
T ss_conf             9999999999999998604789999999999999999999998887473898960278885-668850


No 2  
>PRK13588 flagellin B; Provisional
Probab=100.00  E-value=0  Score=506.13  Aligned_cols=449  Identities=16%  Similarity=0.164  Sum_probs=244.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             74045799999999999999999999999851223688313899999999999999999999998999999999999999
Q gi|254780531|r    2 TSILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGM   81 (452)
Q Consensus         2 ~~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l   81 (452)
                      .+|+||+.|++++++|.+.++.|.+++||||||+|||+++|||++++++.|||+++.+++|..||++++++++|++|++|
T Consensus         3 ~~IntNi~Al~a~~~L~~~~~~l~~slerLSSG~RIN~A~DDAAGlaIs~rmrsQi~gl~qA~rNa~dgiSliQTAEGAL   82 (514)
T PRK13588          3 FRINTNIAALNAHANGVQNNRDLSSSLEKLSSGLRINKAADDASGMAIADSLRSQAANLGQAIRNANDAIGIVQTADKAM   82 (514)
T ss_pred             CEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             47956899999999999999999999997521065356430377899999999999889999986888999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             999999999999875303776---30356788999999999998630012110013566654322334332221112333
Q gi|254780531|r   82 SKAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDN  158 (452)
Q Consensus        82 ~~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~~~~~~~~~  158 (452)
                      .++++||+||||||||++|++   .||++|+.|+++|++||++|++.|+|||++||+|+++...++.+............
T Consensus        83 ~Ev~~iLqRmRELAVQAAN~t~s~~dR~alQ~Ei~qL~~EIdrIa~~T~FNg~~LLdGs~~~~~~qvGa~~~~ti~~~~~  162 (514)
T PRK13588         83 DEQIKILDTIKTKAVQAAQDGQTLESRRALQSDIQRLLEELDNIANTTSFNGQQMLSGSFSNKEFQIGAYSNTTVKASIG  162 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEECCEECCCCCCCCCEEEECCCCCCEEEEEEC
T ss_conf             99999999999999987037898889999999999999999877652623888503677777128853788854788504


Q ss_pred             CCCCCCCCCCCCCC-------CCCCCCCCCCCCCC--CCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCC------CCC
Q ss_conf             33222222222135-------43333322111111--1112233322345443-32221111222211222------222
Q gi|254780531|r  159 GKVQITTIDYYLDP-------ETVLLDSSTDGTER--YGLLDRNHKIKVEPQV-LKDIDVSVYDASGTIST------KKF  222 (452)
Q Consensus       159 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~  222 (452)
                      ..............       ..............  +............... .................      ...
T Consensus       163 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  242 (514)
T PRK13588        163 ATSSDKIGHVRFETSSFSGEGMLASAAAQNLTEVGLKFKQVDGVNDYKIETVRISTSAGTGIGALAEIINKFSDTLGVRA  242 (514)
T ss_pred             CCCCCCCCCEEEEECCCCCCCCEEEECCCCCCCCEEEEEECCCCCCCEEEEEEEEECCCCCHHHHHHHHCCCCCCCCEEE
T ss_conf             54355434302320243333320000034555410244202454431023457630146406778765304455443047


Q ss_pred             CCCCCCCCCCCCCCC----------CCC--------CCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCC
Q ss_conf             222111111111111----------010--------01122210123-33344332222233222221000001223444
Q gi|254780531|r  223 KLATTSGAWLKAANA----------TFD--------QAKGIATIPVP-LPAAPAAPNTTSGTSGSKSPSVAASATYIRMG  283 (452)
Q Consensus       223 ~~~~~~~~~~~~~~~----------~~~--------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (452)
                      ...............          ...        ........... .....+..... ...+................
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~-~~~g~~~~~~~~g~~i~~~~  321 (514)
T PRK13588        243 SYNVMATGGTPIQSGTVRELTINGVEIGTVNDVHKNDADGRLINAINSVKDRTGVEASL-DIQGRINLTSRDGRAISVHG  321 (514)
T ss_pred             EEEEEECCCCCCCCCCCEEEEECCEEECCCEEEECCCCCCHHHHHHHCCCCCCCEEEEE-ECCCCEEEEECCCCEEEEEC
T ss_conf             89986314532234430135541401022101002465402555430323444426896-04660788723772389840


Q ss_pred             CC---------CCCCCCCCCCCCCCCCCCCCCCC-----CCCC-CCCCCCCCCCCC-C---------CCCCCCCCCCCCC
Q ss_conf             43---------21100123321110000000011-----1111-112234444332-2---------3222333222221
Q gi|254780531|r  284 NS---------DIWVRATTKNSITSDPGYTNSTV-----AKVG-NTHYYVDTESTT-L---------DSRKDLPKEIDSG  338 (452)
Q Consensus       284 ~~---------~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~-~---------~~~~~~~~~~~~~  338 (452)
                      ..         .......................     .... ............ .         .............
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  401 (514)
T PRK13588        322 ASASGQVFGGGNFAGISGTQHAFVGRLTLTRTDARDIIVSGVNFSHVGFHSAQGVAEYTVNLRAVRGIIDANVASAAGAN  401 (514)
T ss_pred             CCCCCCCCCCCCEECCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHCCCCC
T ss_conf             45555000344101024553200021135520442035412333333310134553002320122441024200013420


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHH
Q ss_conf             00000122334443210000005789999999999999999998789999999999999999999973062220258999
Q gi|254780531|r  339 YSMVTLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASE  418 (452)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~id~a~~~v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e  418 (452)
                      ..................+..++..+|..||.|++.|...|++|||.|||||+.++++....+|+++++|||+|+|||+|
T Consensus       402 ~~~~~~~~~~~~~~~~v~t~~~A~~ai~~iD~Ai~~Vs~~Ra~LGA~QNRLe~ti~nL~~~~eNl~aA~SrI~DaDmA~E  481 (514)
T PRK13588        402 ANGAQAETNSQGIGAGVTSLKGAMIVMDMAESARKQLDKIRSDLGSVQNQLVSTINNISVTQVNVKAAESQIRDVDFAEE  481 (514)
T ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             12432212133335565327779999999999999999999877299999999999899999999999888985219999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             999999999999999999999720688987525
Q gi|254780531|r  419 STRLSALQTQQQLAVQALSIVNNSTARILSLFR  451 (452)
Q Consensus       419 ~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~  451 (452)
                      |++|+|.|||+||+++|||||||.||.||+|||
T Consensus       482 ma~lTk~qIL~QAg~amLAQANq~pQ~VL~LLq  514 (514)
T PRK13588        482 SANFSKYNILAQSGSFAMAQANAVQQNVLRLLQ  514 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCC
T ss_conf             999999999999999999998256688998429


No 3  
>PRK12808 flagellin; Provisional
Probab=100.00  E-value=0  Score=501.31  Aligned_cols=443  Identities=16%  Similarity=0.157  Sum_probs=240.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             40457999999999999999999999998512236883138999999999999999999999989999999999999999
Q gi|254780531|r    3 SILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGMS   82 (452)
Q Consensus         3 ~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l~   82 (452)
                      +||||++|++++++|.+.+..|++++||||||+|||+|+|||++++++.|||+++.+++|.+||++++++++|++|++|+
T Consensus         2 ~IntN~~Al~a~~~L~~~~~~l~~s~eRLSSG~RIN~A~DdAAGlaIs~rm~sqi~gl~qa~~Na~dgiS~~qtAEgal~   81 (460)
T PRK12808          2 RINTNINSMRTQEYMRQNQAKMSNAMDRLSSGKRINNASDDAAGLAIATRMRARESGLGVAANNTQDGMSLIRTADSAMN   81 (460)
T ss_pred             EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             66446999999999999999999999985011652664102889999999999998899999989989999999999999


Q ss_pred             HHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC-CCC
Q ss_conf             99999999999875303776---30356788999999999998630012110013566654322334332221112-333
Q gi|254780531|r   83 KAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIR-DDN  158 (452)
Q Consensus        83 ~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~~~~~~-~~~  158 (452)
                      ++++||+|||||+||++|++   .||++|+.||++|++||++|+++|+|||++||+|+++...++........... ...
T Consensus        82 ev~~iLqRmReLAVQAANgTns~~DR~aiQ~Ei~qL~~EIdrIa~~T~fNg~~LLdGs~~~~~~~~~~~~~~~~~i~i~~  161 (460)
T PRK12808         82 SVSNILLRMRDLANQSANGTNTDKNQAALQKEFAELQKQIDYIADNTQFNDKNLLDGSNSSIAIQTLDSSDGGKQIGIDL  161 (460)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEECCCCCCCEEEEEC
T ss_conf             99999999999999861566887889999999999999999998738568876005778750267412678760686412


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             33222222222135433333221111111112233322345443322211112222112222222221111111111110
Q gi|254780531|r  159 GKVQITTIDYYLDPETVLLDSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTKKFKLATTSGAWLKAANAT  238 (452)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (452)
                      .............................+..... ......    ..................................
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (460)
T PRK12808        162 KSASLEALGINNLSIGANGNGLAKATELAGVADDT-AANASA----AAAKKIDDTTGDTDVKRDAAKVKAYTKQYKALKA  236 (460)
T ss_pred             CCCCHHHCCCCCCEECCCCCCCCCEEEEECCCCCC-CCCCCH----HHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             32320102555300013233333112420201321-133311----1201013333432002333211000001121000


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCC-----------CCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCC
Q ss_conf             10011222101233334433222-----------22332222210000012234444321100123321110-0000000
Q gi|254780531|r  239 FDQAKGIATIPVPLPAAPAAPNT-----------TSGTSGSKSPSVAASATYIRMGNSDIWVRATTKNSITS-DPGYTNS  306 (452)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  306 (452)
                      ..................+....           ...................................... .......
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (460)
T PRK12808        237 ALDAKDTGLIDDAKKLVDGANTLLNAQAIKKAEETAAKATLTTDITAATLVDKYSDAKSDATTDTRAKAYLDAKAAYDKV  316 (460)
T ss_pred             CCCCCCCCCCCCCHHCCCCCCEEEECCCCCCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHEECCC
T ss_conf             02441111123201101332102102233210000011222444421011002223444344543000000000000023


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             11111111223444433223222333222221000001223344432100000057899999999999999999987899
Q gi|254780531|r  307 TVAKVGNTHYYVDTESTTLDSRKDLPKEIDSGYSMVTLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSIS  386 (452)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~id~a~~~v~~~ra~iGa~~  386 (452)
                      ............................... ..................+...+..+|..||.||+.|...|++|||.|
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~t~~~A~~Ai~~ID~AI~~v~~~Ra~lGA~q  395 (460)
T PRK12808        317 KGSMNSKDVTKLSAAIDRFSKDDASGDAAEV-LVAKGDAAKAATTNGTTSTATDSLSAVKAIDEALKTIADNRATLGATL  395 (460)
T ss_pred             CCCCCCCCCEEECCHHCCCCCCCCCCHHHHH-HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             5654432110110101010124555214555-665212100122454421155599999999999999999999881899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999999999999999973062220258999999999999999999999999720688987525
Q gi|254780531|r  387 SRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR  451 (452)
Q Consensus       387 nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~  451 (452)
                      ||||+.++++....+|+++++|||+|+|||+||++|+|.|||+||+++|||||||.||.||+|||
T Consensus       396 NRLe~~i~nL~~~~eN~~aa~SrI~DaDmA~E~a~ltk~qILqQAgtamLAQANq~pq~vL~LLq  460 (460)
T PRK12808        396 NRLDFNVNNLKSQSSSMASAASQIEDADMAKEMSEMTKFKILNEAGISMLSQANQTPQMVSKLLQ  460 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC
T ss_conf             99999999999999999997667660659999999999999999999999996517478998419


No 4  
>PRK08411 flagellin; Reviewed
Probab=100.00  E-value=0  Score=498.90  Aligned_cols=149  Identities=28%  Similarity=0.355  Sum_probs=141.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             74045799999999999999999999999851223688313899999999999999999999998999999999999999
Q gi|254780531|r    2 TSILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGM   81 (452)
Q Consensus         2 ~~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l   81 (452)
                      .+||||+.+++++++|.+.+..|.+++||||||+|||+++|||++++++.|||++|.+++|..||.+++++.+|++|++|
T Consensus         3 l~INtNi~alna~r~L~~s~~~l~~sleRLSSGlRINsA~DDAAGLaISerm~sQI~GL~qA~rNanDgISl~QTAEGAL   82 (573)
T PRK08411          3 FRINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAM   82 (573)
T ss_pred             CEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             27956799999999999999999999987500065566330477899999999998889999986988999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             999999999999875303776---303567889999999999986300121100135666543223343322
Q gi|254780531|r   82 SKAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVI  150 (452)
Q Consensus        82 ~~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~  150 (452)
                      .+++++|+|||||+||++|++   .||++|+.||++|++||++|++.|+|||++||+|++....++.+....
T Consensus        83 ~Ev~~iLqRmRELAVQAAN~tns~~DR~alQ~Ei~qL~~EIdRIa~tT~FNg~kLLdGs~~~~~~qvGa~~~  154 (573)
T PRK08411         83 DEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFINQEFQIGASSN  154 (573)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEECCEEECCCCCCCCEEEECCCCC
T ss_conf             999999999999999961468998999999999999999997661104389887026887762288426888


No 5  
>PRK13589 flagellin; Provisional
Probab=100.00  E-value=0  Score=498.99  Aligned_cols=149  Identities=28%  Similarity=0.347  Sum_probs=141.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             74045799999999999999999999999851223688313899999999999999999999998999999999999999
Q gi|254780531|r    2 TSILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGM   81 (452)
Q Consensus         2 ~~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l   81 (452)
                      .+||||+.+++++++|.+.++.|.++.||||||+|||+++|||+++++++|||++|.+++|..||.+++++.+|++|++|
T Consensus         3 l~INtNi~alna~rnL~~~~~~l~~sleRLSSGlRINsA~DDAAGLaISermrsQI~GL~qA~rNAnDgISliQTAEGAL   82 (573)
T PRK13589          3 FRINTNIGALNAHANSVVNARELDKSLSRLSSGLRINSAADDASGMAIADSLRSQAATLGQAINNGNDAIGILQTADKAM   82 (573)
T ss_pred             CEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             37956899999999999999999999987510065456330467889999999998889999984998999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             999999999999875303776---303567889999999999986300121100135666543223343322
Q gi|254780531|r   82 SKAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVI  150 (452)
Q Consensus        82 ~~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~  150 (452)
                      .+++++|+|||||+||++|++   .||++|+.||++|++||++|++.|+|||++||+|+++...++.+....
T Consensus        83 ~Ev~~iLqRmRELAVQAAN~tns~~DR~alQ~Ei~qL~~EIdRIa~tT~FNg~kLLdGs~~~~~~qvGa~~~  154 (573)
T PRK13589         83 DEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFINQEFQIGASSN  154 (573)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEECCEEEECCCCCCCEEEECCCCC
T ss_conf             999999999999999970468998999999999999999996661216489998106887771388426888


No 6  
>PRK12584 flagellin A; Reviewed
Probab=100.00  E-value=0  Score=497.36  Aligned_cols=448  Identities=16%  Similarity=0.167  Sum_probs=243.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             74045799999999999999999999999851223688313899999999999999999999998999999999999999
Q gi|254780531|r    2 TSILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGM   81 (452)
Q Consensus         2 ~~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l   81 (452)
                      .+||||+.|++++++|.+.+..|+++.||||||+|||+++|||++++++.|||+++.+++|..||++++++++|++|++|
T Consensus         3 ~~INtNi~Alna~~~L~~~~~~ls~sleRLSSGlRIN~AaDDAAGlaIserm~sQI~gL~qA~rNa~DgiSliQTAEGAL   82 (510)
T PRK12584          3 FQVNTNINAMNAHVQSALTQNALKTSLERLSSGLRINKAADDASGMTVADSLRSQASSLGQAIANTNDGMGIIQVADKAM   82 (510)
T ss_pred             CEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             37965599999999999989999999987533266466430666889999999999889999884887999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             999999999999875303776---30356788999999999998630012110013566654322334332221112333
Q gi|254780531|r   82 SKAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDN  158 (452)
Q Consensus        82 ~~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~~~~~~~~~  158 (452)
                      .++++||+||||||||++|++   .||++|+.|+++|++||++|++.|+|||++||+|++....++.+............
T Consensus        83 ~ev~~iLqRmRELAVQAAN~tns~~dR~aiQ~Ei~qL~~EIdRIa~~T~FNg~~LLdGs~~~~~~qvGa~~~~~i~~~i~  162 (510)
T PRK12584         83 DEQLKILDTVKVKATQAAQDGQTTESRKAIQSDIVRLIQGLDNIGNTTTYNGQALLSGQFTNKEFQVGAYSNQSIKASIG  162 (510)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEECCEECCCCCCCCCEEEECCCCCCEEEEECC
T ss_conf             99999999999999986038898889999999999999998566231657888622677787307755788855887435


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCC--------CCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCCCCC
Q ss_conf             33222222222135433333221--------1111111122333223454433-------22211112222112222222
Q gi|254780531|r  159 GKVQITTIDYYLDPETVLLDSST--------DGTERYGLLDRNHKIKVEPQVL-------KDIDVSVYDASGTISTKKFK  223 (452)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~  223 (452)
                      .......................        .+....................       ....................
T Consensus       163 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~dg~~~~t~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  242 (510)
T PRK12584        163 STTSDKIGQVRIATGALITASGDISLTFKQVDGVNDVTLESVKVSSSAGTGIGVLAEVINKNSNRTGVKAYASVITTSDV  242 (510)
T ss_pred             CCCCCCCCCEEEECCCEEECCCCEEEEEECCCCCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEECCC
T ss_conf             45454444234302531211440355542135644201200466404675136788765134544330456777740221


Q ss_pred             CCCCCCC-CCCCCCCCCCC----CC--CCCCCCCCCC---CCCCCCCCCCCCCCCCCCCHHC-----CCCCCCCCCCCCC
Q ss_conf             2211111-11111110100----11--2221012333---3443322222332222210000-----0122344443211
Q gi|254780531|r  224 LATTSGA-WLKAANATFDQ----AK--GIATIPVPLP---AAPAAPNTTSGTSGSKSPSVAA-----SATYIRMGNSDIW  288 (452)
Q Consensus       224 ~~~~~~~-~~~~~~~~~~~----~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~  288 (452)
                      ....... ...........    ..  ..........   ...+..................     .............
T Consensus       243 ~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~tg~~a~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~  322 (510)
T PRK12584        243 AVQSGSLSNLTLNGIHLGNIADIKKNDSDGRLVAAINAVTSETGVEAYTDQKGRLNLRSTDGRGIEIKTDSVSNGPSALT  322 (510)
T ss_pred             EECCCCCEEEEECCEEEEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCEEE
T ss_conf             00135310232034133101110135651467765312234543168851567167763157524875124445642157


Q ss_pred             CCCC-----CCCCCCCCC------CCCCCCCCCCCCC--CCCCCCCCCC-------------CCCCCCCCCCCCCCCCCC
Q ss_conf             0012-----332111000------0000011111111--2234444332-------------232223332222210000
Q gi|254780531|r  289 VRAT-----TKNSITSDP------GYTNSTVAKVGNT--HYYVDTESTT-------------LDSRKDLPKEIDSGYSMV  342 (452)
Q Consensus       289 ~~~~-----~~~~~~~~~------~~~~~~~~~~~~~--~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~  342 (452)
                      ....     .........      .............  ..........             ............. ....
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  401 (510)
T PRK12584        323 MVNGGQDLTKGSTNYGRLSLTRLDAKSINVVSASDSQHLGFTAIGFGESQVAETTVNLRDVTGNFNANVKSASGA-NYNA  401 (510)
T ss_pred             EECCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCEEEECCCCCCEEEEEEECCCCCCCCCCCHHHHCCC-CCCC
T ss_conf             741541002343332303665314532134421444433203202565420234431122355434320110255-5321


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHH
Q ss_conf             01223344432100000057899999999999999999987899999999999999999999730622202589999999
Q gi|254780531|r  343 TLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRL  422 (452)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~al~~id~a~~~v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l  422 (452)
                      ..............+..++..+|..||.|++.|...|++|||.|||||+.+++|....+|+++++|||+|+|||+||++|
T Consensus       402 ~~~~~~~~~~~~v~t~~~A~~ai~~iD~AI~~V~~~Ra~LGA~QNRLe~ti~NL~~~~eNltaA~SrI~DaD~A~Ema~~  481 (510)
T PRK12584        402 VIASGNQSLGSGVTTLRGAMVVIDIAESAMKMLDKVRSDLGSVQNQMISTVNNISITQVNVKAAESQIRDVDFAEESANF  481 (510)
T ss_pred             HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             00135542355543377799999999999999999997664899989999988999999999998889853089999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999972068898752
Q gi|254780531|r  423 SALQTQQQLAVQALSIVNNSTARILSLF  450 (452)
Q Consensus       423 ~~~q~~~Qaa~~~laqan~~~~~vL~L~  450 (452)
                      +|.|||+||+++|||||||.||.||+||
T Consensus       482 tk~qIL~QAgtamLAQANq~pQ~VL~LL  509 (510)
T PRK12584        482 NKNNILAQSGSYAMSQANTVQQNILRLL  509 (510)
T ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHCC
T ss_conf             9999999999999998617668898622


No 7  
>PRK12806 flagellin; Provisional
Probab=100.00  E-value=0  Score=491.50  Aligned_cols=445  Identities=19%  Similarity=0.198  Sum_probs=246.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             74045799999999999999999999999851223688313899999999999999999999998999999999999999
Q gi|254780531|r    2 TSILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGM   81 (452)
Q Consensus         2 ~~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l   81 (452)
                      .+|+||+.|++++++|++.++.|.+++||||||+|||+|+|||++++++.|||+++.+++|.+||.+++++++|++|++|
T Consensus         3 l~IntN~~Al~a~~~L~~~~~~l~~s~erLSSG~rIN~AaDDaAGlaIs~~m~aqi~gl~qa~~N~~dgiSl~qtAegAL   82 (475)
T PRK12806          3 QVINTNVASLTAQRNLGVSGNMMQTSIQRLSSGLRINSAKDDAAGLAISQRMTAQIRGMNQAVRNANDGISLAQVAEGAM   82 (475)
T ss_pred             CEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             18966599999999999999999999997430276256530378999999999999889999998998999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             999999999999875303776---30356788999999999998630012110013566654322334332221112333
Q gi|254780531|r   82 SKAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDN  158 (452)
Q Consensus        82 ~~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~~~~~~~~~  158 (452)
                      .+++++|+|||||+||++|++   .||++|+.||++|++||++|+++|+|||++||+|++....++.+........... 
T Consensus        83 ~ev~~iLqRmReLAvQAaNgTn~~~DR~aiq~Ei~qL~~eIdrIa~~T~fNg~~LLdGs~~~~~~qvG~~~~~~i~~~~-  161 (475)
T PRK12806         83 QETTNILQRMRELSVQAANSTNNSSDRASIQSEISQLKSELERIAQNTEFNGQRILDGSFSGASFQVGANSNQTINFSI-  161 (475)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEECCEEEECCCCCCCEEEECCCCCCEEEEEE-
T ss_conf             9999999999999998616888778899999999999999987865262688874136777721675378885689961-


Q ss_pred             CCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCC-----CCCC
Q ss_conf             332222222-2213543333322111111111223332234544332------221111222211222222-----2221
Q gi|254780531|r  159 GKVQITTID-YYLDPETVLLDSSTDGTERYGLLDRNHKIKVEPQVLK------DIDVSVYDASGTISTKKF-----KLAT  226 (452)
Q Consensus       159 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-----~~~~  226 (452)
                      +.+...... ............. .......................      ...... ...........     ....
T Consensus       162 ~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  239 (475)
T PRK12806        162 GSIKASSIGGIATATGTEVAGAA-ATDITIAIGGGAATSINSSANFTGALNGQDATSAY-AKAAAINDAGIGGLSVTAST  239 (475)
T ss_pred             CCCCCCCCCCEEEECCCEECCCC-CCEEEEEECCCCCEEECCCCEEEEECCCCCCHHHH-HHHHHCCCCCCCCEEEEEEC
T ss_conf             44311222550110231102443-20146750465311102333023102454301344-33211023454533565303


Q ss_pred             CCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             1111111----111101001122210123333443322222332222210000012234444321100123321110000
Q gi|254780531|r  227 TSGAWLK----AANATFDQAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSDIWVRATTKNSITSDPG  302 (452)
Q Consensus       227 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (452)
                      .......    .....+.................  ...................................+..+.....
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~i~~~~~  317 (475)
T PRK12806        240 SGTQAVGAIGGTAGDTYNLTINGVAIYTNLNVAT--ALTNSDLRDAINGVSNQTGVVASLNGGNMTLTAADGRNITVTES  317 (475)
T ss_pred             CCCEEEEECCCCCCCCEEEEECCEEEEECCCCCC--CCCCHHHHHHHHCCCCCCCEEEEECCCEEEEEECCCCCEEEEEC
T ss_conf             4421321023455652133312402441132000--23422688875212333414887136606898405641588503


Q ss_pred             CCCCCCC--CCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             0000111--1111122344443------3223222333222221000001223344432100000057899999999999
Q gi|254780531|r  303 YTNSTVA--KVGNTHYYVDTES------TTLDSRKDLPKEIDSGYSMVTLNITRHANTDAYNEKLAMEEMVSFIDTQIKC  374 (452)
Q Consensus       303 ~~~~~~~--~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~id~a~~~  374 (452)
                      .......  .........+...      ..................................+..++..+|..||.|+++
T Consensus       318 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~g~~~idv~t~~~A~~Ai~~ID~AI~~  397 (475)
T PRK12806        318 GTGFTAGTDGLTVTGGAFDGALRGTLSISAVDTIAIGGTVANIGLSANISKDTVGIDSLDVSTASGAQTAIKRIDAALNS  397 (475)
T ss_pred             CCCCCCCCCCEEECCCCCCCCCCCEEEECCCCCEECCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             54200245431320454344113301111221010154010012223344444453334454377799999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999998789999999999999999999973062220258999999999999999999999999720688987525
Q gi|254780531|r  375 ATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR  451 (452)
Q Consensus       375 v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~  451 (452)
                      |...|++|||.|||||+.++++....+|+++++|||+|+|||+||++|+|+|||+||+++|||||||.||.||+||.
T Consensus       398 V~~~Ra~lGA~qNRLe~~i~nL~~~~eN~~aA~SrI~DaDmA~E~s~ltk~qILqQA~~amLAQANq~pQ~VL~LL~  474 (475)
T PRK12806        398 VNSNRANMGALQNRFESTIANLQNVSDNLSAARSRIQDADYAAEMASLTKNQILQQAGTAMLAQANSLPQSVLSLLG  474 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC
T ss_conf             99999987089999999999999999999997546450229999999999999999999999996507689998608


No 8  
>PRK06819 flagellin; Validated
Probab=100.00  E-value=0  Score=487.72  Aligned_cols=368  Identities=20%  Similarity=0.226  Sum_probs=234.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             97404579999999999999999999999985122368831389999999999999999999999899999999999999
Q gi|254780531|r    1 MTSILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAG   80 (452)
Q Consensus         1 m~~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~   80 (452)
                      |++|+||++|++++++|++.+.+|+|+|+||||||||++|+|||++++++.+|++++.+++||+||+.++++||+++|++
T Consensus         1 m~~IntN~~A~~a~~~L~~~~~~l~ks~~rLSSG~rIn~asDDaAg~aia~~~~~~i~~l~q~~~N~~~~~s~lqtae~a   80 (371)
T PRK06819          1 MAVINTNSLSLLTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAARNANDGISIAQTTEGA   80 (371)
T ss_pred             CCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98686369999999999999999999999852216637710148899999999999988999999899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9999999999999875303776---3035678899999999999863001211001356665432233433222111233
Q gi|254780531|r   81 MSKAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDD  157 (452)
Q Consensus        81 l~~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~~~~~~~~  157 (452)
                      |.++.++|+|||||+||++|++   .||++|+.|+++|++||.+|+++++|||++||.|...... ..+......     
T Consensus        81 L~~i~~iLqRmRELavqAaNgt~s~~DR~~i~~Ei~ql~~ei~~ia~~t~fnG~~ll~g~~~~~~-qvg~~~~~~-----  154 (371)
T PRK06819         81 LNEINNNLQRVRELTVQAQNGSNSASDLDSIQDEINQRLAEIDRVSDQTDFNGVKVLAENTTMSI-QVGANDGET-----  154 (371)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCEEE-EECCCCCCE-----
T ss_conf             99999999999999997446777767899999999999999999987567888750178875247-632778736-----


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             33322222222213543333322111111111223332234544332221111222211222222222111111111111
Q gi|254780531|r  158 NGKVQITTIDYYLDPETVLLDSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTKKFKLATTSGAWLKAANA  237 (452)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (452)
                         +......  ....            ..+.....    ...............................         
T Consensus       155 ---i~i~~~~--~~~~------------~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  204 (371)
T PRK06819        155 ---IDINLQK--IDSK------------SLGLGSYS----VSGVSGALTSLTDTSVTGVTTTTALDFSDIS---------  204 (371)
T ss_pred             ---EEEEECC--CCCC------------CCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---------
T ss_conf             ---9985043--4443------------22455433----3565554211023344332222111122210---------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             01001122210123333443322222332222210000012234444321100123321110000000011111111223
Q gi|254780531|r  238 TFDQAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSDIWVRATTKNSITSDPGYTNSTVAKVGNTHYY  317 (452)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (452)
                      ..  ......        .     ........         ..........................             
T Consensus       205 ~~--~~~~~~--------~-----~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  247 (371)
T PRK06819        205 TF--AAGATV--------H-----GIGDVGTD---------GAYADGYVVRYFTTDGKQYKGEVDAT-------------  247 (371)
T ss_pred             CC--CCCCCC--------C-----CCCCCCCC---------CCCCCCCEEEECCCCCCCCCCCCCCC-------------
T ss_conf             00--011002--------3-----32210000---------12245520110123443100001234-------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             44443322322233322222100000122334443210000005789999999999999999998789999999999999
Q gi|254780531|r  318 VDTESTTLDSRKDLPKEIDSGYSMVTLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIK  397 (452)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~id~a~~~v~~~ra~iGa~~nrle~~~~~~~  397 (452)
                       ......         ...........................+..+|..||.++++|...|+++||+|||||+..+++.
T Consensus       248 -~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~al~~iD~Ai~~v~~~Ra~lGA~qNrle~~~~nl~  317 (371)
T PRK06819        248 -NGKVTF---------ADDANGDPIDDATALEAAAQFSPAGKATASPLETLDDALKQVDGLRSSLGAVQNRFESTVTNLN  317 (371)
T ss_pred             -CCCEEE---------ECCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             -453000---------0223442000001013433200157789989999999999999999987299999999999899


Q ss_pred             HHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             999999973062220258999999999999999999999999720688987525
Q gi|254780531|r  398 LMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR  451 (452)
Q Consensus       398 ~~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~  451 (452)
                      ...+|+++++|+|+|+|||+|+++|+|+||++||+++||+||||.||+||+|||
T Consensus       318 ~~~~nl~aa~s~I~DaD~A~E~t~l~k~qil~Qa~~amLaqANq~~q~vL~Llq  371 (371)
T PRK06819        318 NTVTNLTSARSRIEDADYATEVSNMSRAQILQQAGTSVLAQANQVPQTVLSLLR  371 (371)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC
T ss_conf             999999997532773039999999999999999999999997707789998509


No 9  
>PRK08869 flagellin; Reviewed
Probab=100.00  E-value=0  Score=479.73  Aligned_cols=373  Identities=19%  Similarity=0.251  Sum_probs=240.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             97404579999999999999999999999985122368831389999999999999999999999899999999999999
Q gi|254780531|r    1 MTSILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAG   80 (452)
Q Consensus         1 m~~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~   80 (452)
                      ..||+||+.|++++++|++.++.|.|+++||||||||++|+|||++++++++||+++.+++||.+|+.++++||+++|++
T Consensus         2 ~~~IntN~~a~~a~~~L~~~~~~l~~s~~rLSSG~rIn~asDDaag~aia~~l~~~i~~l~q~~~N~~~~~s~lqtae~a   81 (377)
T PRK08869          2 AVNVNTNVSAMTAQRNLNGATSALNQSMERLSSGKRINSAKDDAAGLQISNRLTTQIRGLDVAVRNANDGISIAQTAEGA   81 (377)
T ss_pred             CCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             85782619999999999999999999999861106647820168999999999999999999999899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9999999999999875303776---3035678899999999999863001211001356665432233433222111233
Q gi|254780531|r   81 MSKAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDD  157 (452)
Q Consensus        81 l~~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~~~~~~~~  157 (452)
                      |.++.++|+|||||+||++|++   .||++|+.|+++|++||.+|++.++|||+|||.|.++...++.+......+....
T Consensus        82 L~~i~~iL~RmrELavqaaNgt~s~~DR~ai~~Ei~~L~~ei~~ian~t~fnG~~Ll~G~~~~~~~q~g~~~g~~~~~~~  161 (377)
T PRK08869         82 MNETTNILQRMRDLSLQSANGSNSASDRQALQEEVTALNDELNRIAETTSFGGTKLLNGSFGTKSFQIGANSGEAVSLDL  161 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEECCCCCCCEEEEEE
T ss_conf             99999999999999997634655555799999999999999999998655488774247776602621467884599850


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             33322222222213543333322111111111223332234544332221111222211222222222111111111111
Q gi|254780531|r  158 NGKVQITTIDYYLDPETVLLDSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTKKFKLATTSGAWLKAANA  237 (452)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (452)
                      ...          .......+    .............+....                 ...........         
T Consensus       162 ~~~----------~~~~~~~g----~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~---------  201 (377)
T PRK08869        162 SNM----------RSDAKIMG----GASYVAEEGKDKDWTVSG-----------------DNSGLTLSFTD---------  201 (377)
T ss_pred             CCC----------CHHHHCCC----CEEEECCCCCCCCCEECC-----------------CCCCEEEEEEC---------
T ss_conf             432----------01121367----514522554455420014-----------------66532687403---------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             01001122210123333443322222332222210000012234444321100123321110000000011111111223
Q gi|254780531|r  238 TFDQAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSDIWVRATTKNSITSDPGYTNSTVAKVGNTHYY  317 (452)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (452)
                         .........+..................      ..........................                 
T Consensus       202 ---~~~~~~~~~i~~~~~~~~~~~~~~i~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------  255 (377)
T PRK08869        202 ---KGGEAQSININAKAGDDIEELATYINGQ------TDAVGASVTEDGKLQLFAANSSATGD-----------------  255 (377)
T ss_pred             ---CCCCCEEEEEECCCCCHHHHHHHHHCCC------CCCEEEEECCCCEEEEEECCCCCCCC-----------------
T ss_conf             ---6665225787325551378888875155------54313564157516886125544443-----------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             44443322322233322222100000122334443210000005789999999999999999998789999999999999
Q gi|254780531|r  318 VDTESTTLDSRKDLPKEIDSGYSMVTLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIK  397 (452)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~id~a~~~v~~~ra~iGa~~nrle~~~~~~~  397 (452)
                             ...........     ................+..+++.+|..||.|+++|...|+++||++||||+..++++
T Consensus       256 -------~~~~~~~~~~~-----~~~~~~~~~~~~~d~tt~~~a~~ai~~iD~Ai~~v~~~ra~lGA~~NrLe~~~~~l~  323 (377)
T PRK08869        256 -------LSFSGALAAEL-----GLGNKGPVTVDDLDISTVGGAQQAVAVIDAALKYVDSHRADLGAFQNRFTHAINNLQ  323 (377)
T ss_pred             -------CCCCCHHHHHH-----CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             -------00031022221-----124443111221001225339999999999999999999987289999999999999


Q ss_pred             HHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             999999973062220258999999999999999999999999720688987525
Q gi|254780531|r  398 LMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR  451 (452)
Q Consensus       398 ~~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~  451 (452)
                      ...+|+++++|+|+|+|||+|+++|+|+||++||+++||+||||.||+||+|||
T Consensus       324 ~~~~n~~aa~S~I~DaD~A~E~t~l~k~qil~Qa~~amLaqANq~~q~vL~Llq  377 (377)
T PRK08869        324 NISENLSASNSRIKDTDFAKETTELTKAQILQQAGTSILAQAKQAPQSALSLLQ  377 (377)
T ss_pred             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCC
T ss_conf             999999987423351319999999999999999999999997317679998409


No 10 
>PRK12803 flagellin; Provisional
Probab=100.00  E-value=0  Score=465.45  Aligned_cols=331  Identities=18%  Similarity=0.187  Sum_probs=230.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             40457999999999999999999999998512236883138999999999999999999999989999999999999999
Q gi|254780531|r    3 SILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGMS   82 (452)
Q Consensus         3 ~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l~   82 (452)
                      .||||+++++++++|++.++.|.++++||||||||++|+|||++++++.||++++.+++|+.||++++++||+++|++|.
T Consensus         2 ~IntN~~a~~A~~~l~~~~~~l~~s~~rLSSG~RInsa~DDaAGlaIa~~l~sqi~~l~qa~rNa~daiS~lqtaegal~   81 (335)
T PRK12803          2 IINHNTSAINASRNNSINAANLSKTQEKLSSGHRINRASDDAAGMGVAGKINAQIRGLSQASRNTSKAINFIQTTEGNLN   81 (335)
T ss_pred             EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             67267999999999999999999999985100664774215889999999999999899998539889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99999999999875303776---303567889999999999986300121100135666543223343322211123333
Q gi|254780531|r   83 KAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDNG  159 (452)
Q Consensus        83 ~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~~~~~~~~~~  159 (452)
                      ++.++|+|||||+|||+|++   .||.+|+.||++|++||.+|++++.|||++||+|.................      
T Consensus        82 ei~~iLqRmrELavqAaNgT~s~~dr~~i~~E~~qL~~eI~~Ia~~T~fNg~~ll~g~~~~~~~~~~~~~~~~~------  155 (335)
T PRK12803         82 EVEKVLVRMKELAVQSGNGTYSDADRGSIQIEIEQLTDEINRIADQAQYNQMHMLSNKSAAQNVRTAEELGMQP------  155 (335)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCC------
T ss_conf             99999999999999853678998999999999999999999999848368861446765332311176506542------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             32222222221354333332211111111122333223454433222111122221122222222211111111111101
Q gi|254780531|r  160 KVQITTIDYYLDPETVLLDSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTKKFKLATTSGAWLKAANATF  239 (452)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (452)
                                   ......      ..+........          .....    +....                    
T Consensus       156 -------------~~~~~~------~~~~~~~~~~t----------~~~~~----g~~~~--------------------  182 (335)
T PRK12803        156 -------------AKINTP------ASLSGSQASWT----------LRVHV----GANQD--------------------  182 (335)
T ss_pred             -------------CCCCCC------CCCCCCCCCEE----------EEEEE----CCCCC--------------------
T ss_conf             -------------235652------21135555236----------89986----37776--------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             00112221012333344332222233222221000001223444432110012332111000000001111111122344
Q gi|254780531|r  240 DQAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSDIWVRATTKNSITSDPGYTNSTVAKVGNTHYYVD  319 (452)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (452)
                            ...........  ........+  ....       ..  ...        .... .......            
T Consensus       183 ------~~~~~~~~~~~--~~~~~~~~g--~~~~-------~~--~~~--------~~~~-~~~~~~~------------  222 (335)
T PRK12803        183 ------EAIAVNIYAAN--VANLFSGEG--AQQA-------AP--VQE--------GAQQ-EGAQAAP------------  222 (335)
T ss_pred             ------CEEEEEEEECH--HHHHHCCCC--CHHH-------HH--HHC--------CCCC-CCCCCCC------------
T ss_conf             ------33788532003--666541455--2011-------11--100--------1100-1100012------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             44332232223332222210000012233444321000000578999999999999999999878999999999999999
Q gi|254780531|r  320 TESTTLDSRKDLPKEIDSGYSMVTLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKLM  399 (452)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~id~a~~~v~~~ra~iGa~~nrle~~~~~~~~~  399 (452)
                        ....        ...         ...........+...+..+|..||.|+++|...|+++||++||||+..+++...
T Consensus       223 --~~~~--------~~~---------~~g~~~~~~i~t~~~A~~ai~~iD~Ai~~v~~~Ra~lGA~qNRLe~~~~nl~~~  283 (335)
T PRK12803        223 --APAA--------APA---------QGGVNSPVNVTTTVDANMSLAKIENAIRMISDQRANLGAFQNRLESIKASTEYA  283 (335)
T ss_pred             --CCCC--------CCC---------CCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             --2000--------001---------356545430000865999999999999999999998708999999999899999


Q ss_pred             HHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999973062220258999999999999999999999999720688987525
Q gi|254780531|r  400 RDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR  451 (452)
Q Consensus       400 ~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~  451 (452)
                      .+|+++++|+|+|+|||+|+++|+|.|||+|++++||+|||+.||.||+|||
T Consensus       284 ~~Nl~aa~SrI~DaD~A~E~~~ltk~qil~Qa~~amLaQAN~~pq~vL~LLq  335 (335)
T PRK12803        284 IENLKASYAQIKDATMTDEVVASTTNSILTQSAMAMIAQANQVPQYVLSLLR  335 (335)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC
T ss_conf             9999997531563059999999999999999999999997617689998409


No 11 
>PRK12717 flgL flagellar hook-associated protein FlgL; Provisional
Probab=100.00  E-value=0  Score=459.84  Aligned_cols=146  Identities=19%  Similarity=0.242  Sum_probs=140.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             40457999999999999999999999998512236883138999999999999999999999989999999999999999
Q gi|254780531|r    3 SILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGMS   82 (452)
Q Consensus         3 ~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l~   82 (452)
                      ||+||+++.+.+++|++.+++|.++||||||||||++|||||++++++++|+.++.+++||.||++++++||+++|++|+
T Consensus         2 RIs~~~~~~~~~~nl~~~~~~l~~~~eqLSSGkrIn~asDDpag~a~~~~l~~~i~~l~Q~~~N~~~a~s~lq~aE~aL~   81 (523)
T PRK12717          2 RISTAQFYESSAANYQRNYSNLVKTQEEISSGIRINTAADDPVGAARLLQLEQQQAMLDQYKGNITTIKNSLGQEETTLN   81 (523)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             16369999999999999999999999987326866881139999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             99999999999875303776---3035678899999999999863001211001356665432233433
Q gi|254780531|r   83 KAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKS  148 (452)
Q Consensus        83 ~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~  148 (452)
                      +++++|+|||||||||+|++   .||++|+.|+++|++||++|+|.++|||+|||+|+.....++....
T Consensus        82 ~v~~iLqr~reLavQaaNgt~s~~DR~ai~~Ei~ql~~el~~iaNtt~~nG~~lf~G~~~~~~pf~~~~  150 (523)
T PRK12717         82 SINDVLQRARELAVSAGNGGLTDADRKAIASELKQIEAQLLGLMNSRDANGQYLFAGSKSDTPPYVRNA  150 (523)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEECC
T ss_conf             999999999999998716899988999999999999999998860455576267457666766404458


No 12 
>PRK12807 flagellin; Provisional
Probab=100.00  E-value=0  Score=423.33  Aligned_cols=283  Identities=21%  Similarity=0.313  Sum_probs=226.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             40457999999999999999999999998512236883138999999999999999999999989999999999999999
Q gi|254780531|r    3 SILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGMS   82 (452)
Q Consensus         3 ~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l~   82 (452)
                      ||+||+++++++++|++.++.|.++|+||||||||++|+|||++++++++|++++.+++||.+|+.++.+||+++|++|+
T Consensus         2 rIntN~~a~~a~~~l~~~~~~l~~~~~rlSSG~rIn~asDD~ag~aia~~l~s~~~~~~~~~~N~~~a~s~l~tad~al~   81 (287)
T PRK12807          2 RINTNINSMRTQEYMRQNQDKMNVSMNRLSSGKRINSAADDAAGLAIATRMRARQSGLEKASQNTQDGMSLIRTAESAMN   81 (287)
T ss_pred             EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             55142999999999999999999999986001664785537999999999999999899999889989999999999999


Q ss_pred             HHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99999999999875303776---303567889999999999986300121100135666543223343322211123333
Q gi|254780531|r   83 KAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDNG  159 (452)
Q Consensus        83 ~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~~~~~~~~~~  159 (452)
                      +++++|+|||||+|+++|++   .||++|+.||++|+++|.+|+++++|||++||.|......++....         .+
T Consensus        82 ~i~~il~RmrELavqa~n~t~s~~dR~ai~~E~~~L~~~i~~Ia~nt~fnG~~l~~g~~~~~~~~~~~~---------~~  152 (287)
T PRK12807         82 SVSNILTRMRDIAVQSSNGTNTAENQSALQKEFAELQEQIDYIAKNTEFNDKNLLAGTGAVTIGSTSIS---------GA  152 (287)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCC---------CC
T ss_conf             999999999999998744799888899999999999999999998573898740278876545443567---------75


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             32222222221354333332211111111122333223454433222111122221122222222211111111111101
Q gi|254780531|r  160 KVQITTIDYYLDPETVLLDSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTKKFKLATTSGAWLKAANATF  239 (452)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (452)
                      .+.+.                        ...       ......           ..                      
T Consensus       153 ~~~~~------------------------~~~-------~~~~~~-----------~~----------------------  168 (287)
T PRK12807        153 EISIE------------------------TLD-------SSATNQ-----------QI----------------------  168 (287)
T ss_pred             EEEEE------------------------ECC-------CCCCCC-----------EE----------------------
T ss_conf             26787------------------------412-------566663-----------37----------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             00112221012333344332222233222221000001223444432110012332111000000001111111122344
Q gi|254780531|r  240 DQAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSDIWVRATTKNSITSDPGYTNSTVAKVGNTHYYVD  319 (452)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (452)
                               ....          ....   ....     .                                        
T Consensus       169 ---------~~~~----------~~~~---~~~~-----~----------------------------------------  181 (287)
T PRK12807        169 ---------TIKL----------ANTT---AEKL-----G----------------------------------------  181 (287)
T ss_pred             ---------EEEE----------CCCC---HHHH-----C----------------------------------------
T ss_conf             ---------8874----------1331---3442-----3----------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             44332232223332222210000012233444321000000578999999999999999999878999999999999999
Q gi|254780531|r  320 TESTTLDSRKDLPKEIDSGYSMVTLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKLM  399 (452)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~id~a~~~v~~~ra~iGa~~nrle~~~~~~~~~  399 (452)
                                                ...............+..+|..||.++++|...|+.+||++||||...+++...
T Consensus       182 --------------------------~~~~~~~~~~~~~~~a~~~l~~id~ai~~v~~~ra~lGA~~nrle~~~~~l~~~  235 (287)
T PRK12807        182 --------------------------IDATTSNISISGAASALAAISALNTALNTVAGNRATLGATLNRLDRNVENLNNQ  235 (287)
T ss_pred             --------------------------CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             --------------------------233234333454777999999999999999999999899999999999899999


Q ss_pred             HHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999973062220258999999999999999999999999720688987525
Q gi|254780531|r  400 RDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR  451 (452)
Q Consensus       400 ~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~  451 (452)
                      .+++++++|+|+|+|||+|+++|+++||++|||++||+|||+.||.||+|||
T Consensus       236 ~~~l~~~~S~i~DaD~A~e~~~l~~~qil~Qaa~a~lsqAN~~~q~vL~Llq  287 (287)
T PRK12807        236 ATNMASAASQIEDADMAKEMSEMTKFKILNEAGISMLSQANQTPQMVSKLLQ  287 (287)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9999999887771049999999999999999999999998467899998509


No 13 
>PRK12805 flagellin; Provisional
Probab=100.00  E-value=0  Score=422.80  Aligned_cols=282  Identities=18%  Similarity=0.255  Sum_probs=225.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             40457999999999999999999999998512236883138999999999999999999999989999999999999999
Q gi|254780531|r    3 SILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGMS   82 (452)
Q Consensus         3 ~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l~   82 (452)
                      ||+||+.+++++++|++.+..|.|+|+||||||||++|+|||++++++++|++++.+++||.+|+.++++||+++|++|.
T Consensus         2 rIntN~~a~~a~~~L~~~~~~l~~s~~rLSSG~rIn~asDDaag~aia~~l~s~~~~~~q~~~N~~da~s~lqtad~aL~   81 (287)
T PRK12805          2 KVNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSALS   81 (287)
T ss_pred             EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             55454999999999999999999999986023551674316999999999999999899999889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99999999999875303776---303567889999999999986300121100135666543223343322211123333
Q gi|254780531|r   83 KAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDNG  159 (452)
Q Consensus        83 ~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~~~~~~~~~~  159 (452)
                      ++.++|+|||||+||++|++   .||.+|+.||++|+++|.+|++++.|||++||+++.....+....            
T Consensus        82 ~i~~iL~RmreLavqaangt~s~~dr~~i~~Ei~~L~~~i~~ia~~t~fng~~ll~~~~~~~~~~~~~------------  149 (287)
T PRK12805         82 SMSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNYNNIKLLDQTATGAATQVSI------------  149 (287)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCEEEEE------------
T ss_conf             98999999999999755788887889999999999999999998735678852557777777424787------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             32222222221354333332211111111122333223454433222111122221122222222211111111111101
Q gi|254780531|r  160 KVQITTIDYYLDPETVLLDSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTKKFKLATTSGAWLKAANATF  239 (452)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (452)
                                          ..      +           ..............              .           
T Consensus       150 --------------------~~------~-----------~~~~~~~~~~~~~~--------------~-----------  167 (287)
T PRK12805        150 --------------------QA------S-----------DKANDLINIDLFNA--------------K-----------  167 (287)
T ss_pred             --------------------EE------C-----------CCCCCEEEEECCCC--------------C-----------
T ss_conf             --------------------51------4-----------77662367640222--------------3-----------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             00112221012333344332222233222221000001223444432110012332111000000001111111122344
Q gi|254780531|r  240 DQAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSDIWVRATTKNSITSDPGYTNSTVAKVGNTHYYVD  319 (452)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (452)
                        +..  ....           ..                   +....                                
T Consensus       168 --~~~--~~~~-----------~~-------------------~~~~~--------------------------------  181 (287)
T PRK12805        168 --GLS--AGTI-----------TL-------------------GSGST--------------------------------  181 (287)
T ss_pred             --CCC--CCCC-----------CC-------------------CCCCC--------------------------------
T ss_conf             --444--2220-----------02-------------------55420--------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             44332232223332222210000012233444321000000578999999999999999999878999999999999999
Q gi|254780531|r  320 TESTTLDSRKDLPKEIDSGYSMVTLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKLM  399 (452)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~id~a~~~v~~~ra~iGa~~nrle~~~~~~~~~  399 (452)
                                                 .................++..||.++++|...|+++||++||||+..+++...
T Consensus       182 ---------------------------~~~~~~~~~~~~~~a~~a~~~id~ai~~v~~~ra~lGA~~NrLe~~~~~l~~~  234 (287)
T PRK12805        182 ---------------------------VAGYSALSVADADSSQEATEAIDELINNISNGRALLGAGMSRLSYNVSNVNNQ  234 (287)
T ss_pred             ---------------------------CCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             ---------------------------00100000124778999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999973062220258999999999999999999999999720688987525
Q gi|254780531|r  400 RDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR  451 (452)
Q Consensus       400 ~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~  451 (452)
                      .+++++++|+|+|+|||+|+++|+|+||++|++++||+|||+.||.||+||+
T Consensus       235 ~~nl~~~~S~i~DaD~A~e~~~l~k~qil~Qaa~amlaQAN~~pq~vL~Ll~  286 (287)
T PRK12805        235 SIATKASASSIEDADMAAEMSEMTKYKILTQTSISMLSQANQTPQMLTQLIN  286 (287)
T ss_pred             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHC
T ss_conf             9999998753772219999999999999999999999998327799998757


No 14 
>PRK06663 flagellar hook-associated protein FlgL; Validated
Probab=100.00  E-value=0  Score=419.20  Aligned_cols=413  Identities=13%  Similarity=0.138  Sum_probs=234.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             97404579999999999999999999999985122368831389999999999999999999999899999999999999
Q gi|254780531|r    1 MTSILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAG   80 (452)
Q Consensus         1 m~~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~   80 (452)
                      +.||+||+++.+++++|++.+++|.|+|+||||||||++|||||++++++++|+.++..++||.||++++.+||+++|++
T Consensus         2 ~~RIst~~~~~~~~~~l~~~~~~l~~~qeqlSSGkrI~~~SDDP~~~a~~~~l~~~~~~~~Qy~~N~~~a~s~l~~~e~~   81 (420)
T PRK06663          2 INRISHPMQYNNLKFSLREQESKITKLLNQLQTGKRIRKLRDDPTGATHSIRLDSRLFKLNTYEKNIDTGRSRLQYAEGY   81 (420)
T ss_pred             CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             71406399999999999999999999999874248658933599999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9999999999999875303776---3035678899999999999863001211001356665432233433222111233
Q gi|254780531|r   81 MSKAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDD  157 (452)
Q Consensus        81 l~~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~~~~~~~~  157 (452)
                      |+++.++|+|||||+|||+|++   .||++|+.|+++|+++|.+|+|+++++|+|||+|......++.............
T Consensus        82 L~~~~~il~r~relavqaaNgt~s~~dR~aia~Ei~~l~~~l~~iaNt~~~~G~~lF~G~~~~~~pf~~~~~~~~~~~~~  161 (420)
T PRK06663         82 LQSLGNILQRARELAVQGANGTYQGDDKKAIAKEIDELLEDLVAIANAKGADGYSLFSGTKIDREPFEPIESKIKGLQGD  161 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99999999999999997426899867799999999999999999984055588464477137888764234443343332


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             33322222222213543333322111111111223332234544332221111222211222222222111111111111
Q gi|254780531|r  158 NGKVQITTIDYYLDPETVLLDSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTKKFKLATTSGAWLKAANA  237 (452)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (452)
                      ..........+.................+.........+..........     .      ...+...............
T Consensus       162 ~~~~~~~~i~y~G~~~~~~~~i~~~~~~~~~~~g~~~f~~~~~~~~~~~-----~------~~~~~~~~~~~~~~~~~~~  230 (420)
T PRK06663        162 ELKNQIIGVEYNGNQGEQLTEIENGEYIPTNYPGNKVFWGQNQSITSSV-----D------NSGFVVKEDTKIYIDGVEI  230 (420)
T ss_pred             CCCCCEEEEEECCCCCCCEEEECCCCEEEECCCCCCEEECCCCCCEECC-----C------CCCCEECCCCEEEECCEEE
T ss_conf             3355325678525543000440366156302575210222553300012-----5------6540331463366314267


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             01001122210123333443322222332222210000012234444321100123321110000000011111111223
Q gi|254780531|r  238 TFDQAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSDIWVRATTKNSITSDPGYTNSTVAKVGNTHYY  317 (452)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (452)
                      ....+..........+...............       ..........................+               
T Consensus       231 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------  288 (420)
T PRK06663        231 HLTAGDTADDIIAKINESSAPVKASLDPVLN-------SISISTTTPHQIWITDEEGSTVLRDLG---------------  288 (420)
T ss_pred             EECCCCCHHHHHHHHCCCCCCEEEEEECCCC-------CEEEECCCCCCEEEECCCCCCCEECCC---------------
T ss_conf             5115751888887514777522576302455-------413311565413552056641000123---------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             44443322322233322222100000122334443210000005789999999999999999998789999999999999
Q gi|254780531|r  318 VDTESTTLDSRKDLPKEIDSGYSMVTLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIK  397 (452)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~id~a~~~v~~~ra~iGa~~nrle~~~~~~~  397 (452)
                      .........+....................................+|..||.++++|...||+||||+||||++.++++
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~ld~a~~~v~~~ra~iGar~nrle~~~~~~~  368 (420)
T PRK06663        289 LLTQNTKEPPYNLSNSAEVRGRSIFDVLIQLRDALIQNDQELIGGRDLAELDEALENILRRLADLGAKENRLERSYERIS  368 (420)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             22345567764434333335523888899887655324156566658999999999999999998799999999999888


Q ss_pred             HHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             999999973062220258999999999999999999999999720688987525
Q gi|254780531|r  398 LMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR  451 (452)
Q Consensus       398 ~~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~  451 (452)
                      +..+++++++|+|+|+||||++++|+++|+.+||++++++|+.+     ||||.
T Consensus       369 ~~~~~l~~~~S~i~DaD~a~~it~l~~~~~~~qAa~~~~a~i~~-----~SLfd  417 (420)
T PRK06663        369 KEIMDMTEDMSKYTDLDVTKAITNLKMLELAHQVSLGVSAKIMK-----TTLLD  417 (420)
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCHHH
T ss_conf             89999999886330523999999999999999999999998706-----62887


No 15 
>PRK08870 flgL flagellar hook-associated protein FlgL; Reviewed
Probab=100.00  E-value=0  Score=414.81  Aligned_cols=396  Identities=16%  Similarity=0.138  Sum_probs=235.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             40457999999999999999999999998512236883138999999999999999999999989999999999999999
Q gi|254780531|r    3 SILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGMS   82 (452)
Q Consensus         3 ~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l~   82 (452)
                      ||+||+++.+++++|++.+++|.++||||||||||++|||||++++++++|++++.+++||++|++++++||+++|++|+
T Consensus         2 RIst~~~~~~~~~~l~~~~~~l~~~~eqlSTGkrI~~~sDDp~~~~~~~~l~~~~~~l~q~~~N~~~~~s~l~~ad~aL~   81 (403)
T PRK08870          2 RISTAQMYQQSVNSMLDQQAKLSQLQQQLSSGKKLLTPSDDPVAAAQAVNLSQESALLDQYTKNINLARNRLQQEESTLG   81 (403)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             56569999999999999999999999997406864882138999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             999999999998753037763---03567889999999999986300121100135666543223343322211123333
Q gi|254780531|r   83 KAIDVMSTIKNKITAGVERGT---DSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDNG  159 (452)
Q Consensus        83 ~~~~~l~r~relavqa~n~~~---dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~~~~~~~~~~  159 (452)
                      ++.++|+|+|||+||++|++.   ||++|+.|+++|+++|.+++|.+.|+|+|||+|......|+.........+....+
T Consensus        82 ~~~~il~r~relavqaangt~~~~dr~ai~~E~~~l~~~i~~iaNt~~~~G~~lF~G~~~~t~pf~~~~~g~~~y~Gd~~  161 (403)
T PRK08870         82 SVEDLLQRARELVVQAGNGSLSDSDRQAIATELQGLRDQLLSLANSKDESGNYLFAGTQSGTQPFAFDASGNVVYSGDSG  161 (403)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCEEEECCCCCEEEECCCC
T ss_conf             99999999999999862467870569999999999999999998405546612204666666404434887458605765


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCC
Q ss_conf             322222222213543333322111111111223332234544332221111222211222222-2221111111111110
Q gi|254780531|r  160 KVQITTIDYYLDPETVLLDSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTKKF-KLATTSGAWLKAANAT  238 (452)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  238 (452)
                      ..........              ....+.................................. ................
T Consensus       162 ~~~~~v~~~~--------------~v~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (403)
T PRK08870        162 QRQVQVADSV--------------TVATNDPGDEVFMSVPNGFGDYVPAAYAANTGSGLLVSVAKTTPSAPTNGDTYTIT  227 (403)
T ss_pred             CEEEEECCCC--------------EEEECCCHHHHHHHCCCCCCCEEECCCCCCCCCCEEEEEEECCCCCCCCCCCEEEE
T ss_conf             2468741550--------------46504745777641346765201022234455532431010045555667634899


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             10011222101233334433222223322222100000122344443211001233211100000000111111112234
Q gi|254780531|r  239 FDQAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSDIWVRATTKNSITSDPGYTNSTVAKVGNTHYYV  318 (452)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (452)
                      .....+.....+.........                           .......+..+..    .........   ...
T Consensus       228 ~~~~~~~~~~~i~~~~~~~~~---------------------------~~~~~~~~~~~~~----~~~~~~~~g---~~~  273 (403)
T PRK08870        228 FGDTAGAPTYEVTDSSTGTVV---------------------------TAQAYDAGQPINF----NGVEVQISG---APA  273 (403)
T ss_pred             EECCCCCCEEEEECCCCCCCC---------------------------CCCCCCCCCCEEE----CCEEEEEEC---CCC
T ss_conf             831577513898505665312---------------------------3444456761230----554899703---546


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             44433223222333222221000001223344432100000057899999999999999999987899999999999999
Q gi|254780531|r  319 DTESTTLDSRKDLPKEIDSGYSMVTLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKL  398 (452)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~id~a~~~v~~~ra~iGa~~nrle~~~~~~~~  398 (452)
                      ........+................+................+..+|..||+++++|...|++|||++||||++.++++.
T Consensus       274 ~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~id~a~~~v~~~ra~lGa~~nrle~~~~~l~~  353 (403)
T PRK08870        274 AGDSFTLTPAAGVSIFDTLDDAIAALESPVDNSVSDAALQNELAQALTNLDNALNNVLTARASVGARLNELESYEAVHED  353 (403)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             66427851476531998999999986366776431055688999999999999999999999985999999999988888


Q ss_pred             HHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999973062220258999999999999999999999999720688987525
Q gi|254780531|r  399 MRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR  451 (452)
Q Consensus       399 ~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~  451 (452)
                      ..+++++++|+|||+|||||+++|+++|+.+||+++|++|+++     ||||-
T Consensus       354 ~~~~l~~~~S~i~DaD~ae~~t~l~~~q~~~qAa~~~~aqi~q-----~SL~d  401 (403)
T PRK08870        354 NKLVNTSALSSLEDLDYASAISEFEKQQAALQAAQQAFSKVQS-----LSLFN  401 (403)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCHHH
T ss_conf             9999999876512547999999999999999999999998834-----51762


No 16 
>PRK12687 flagellin; Reviewed
Probab=100.00  E-value=0  Score=416.13  Aligned_cols=307  Identities=44%  Similarity=0.664  Sum_probs=230.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             97404579999999999999999999999985122368831389999999999999999999999899999999999999
Q gi|254780531|r    1 MTSILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAG   80 (452)
Q Consensus         1 m~~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~   80 (452)
                      |+||+||++|++|+++|++.+..|.++|+||||||||++|+|||++++++.+||+++.++++..+|+.++++.++++|++
T Consensus         1 M~sI~TN~~A~~A~~~L~~~~~~l~~s~~RLSTG~RInsA~DDAAglaIa~~mrs~~~gl~~a~~n~~~g~s~v~ta~~a   80 (311)
T PRK12687          1 MSSLLTNTSAMTALQTLRNVSSSLATTQNRISTGYRVATASDNSAYWSIATTMRSDNEALSAVSDALGLGAATVDTMYTA   80 (311)
T ss_pred             CCCEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             97320339999999999998999999999853236335531218899999999988988999998887478999999999


Q ss_pred             HHHH----HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9999----999999999875303776303567889999999999986300121100135666543223343322211123
Q gi|254780531|r   81 MSKA----IDVMSTIKNKITAGVERGTDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRD  156 (452)
Q Consensus        81 l~~~----~~~l~r~relavqa~n~~~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~~~~~~~  156 (452)
                      |.++    .++|.+||++++++.+++.||..|+.|+.+|.+||.+|+.++.|||.+||.++.....+.........+...
T Consensus        81 l~~v~~~~~~~l~~l~~~~~~a~~~~~Dr~~iq~E~~~L~~ei~~ia~~t~fNG~nlL~~~~~~~~~~~~~~~~~~~~~~  160 (311)
T PRK12687         81 LTSVVGDSKSGLTALKAKLVAAREPGIDRTKIQSEITAIQNDLKNTAGLAVFNGENWLSVDSSPSSYNATKSVVSSFTRV  160 (311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCEECC
T ss_conf             99889889999999999998545674138999999999999999999756534424304676444454421000000024


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             33332222222221354333332211111111122333223454433222111122221122222222211111111111
Q gi|254780531|r  157 DNGKVQITTIDYYLDPETVLLDSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTKKFKLATTSGAWLKAAN  236 (452)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (452)
                      . +........                                                 .............       
T Consensus       161 ~-g~~~~~~~~-------------------------------------------------~~~~~~~~~~~~~-------  183 (311)
T PRK12687        161 G-GTVAIKTID-------------------------------------------------VNIAKLALYDTNG-------  183 (311)
T ss_pred             C-CCCEEEEEE-------------------------------------------------EECHHHHHCCCCC-------
T ss_conf             7-731000145-------------------------------------------------3110121003566-------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             10100112221012333344332222233222221000001223444432110012332111000000001111111122
Q gi|254780531|r  237 ATFDQAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSDIWVRATTKNSITSDPGYTNSTVAKVGNTHY  316 (452)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (452)
                         ...     .        +......                 .......                             
T Consensus       184 ---~~~-----~--------~~~~~~~-----------------~~~~~~~-----------------------------  201 (311)
T PRK12687        184 ---SST-----T--------GILDKTV-----------------TVGTATA-----------------------------  201 (311)
T ss_pred             ---CCC-----C--------CCHHHHH-----------------CCCCCCC-----------------------------
T ss_conf             ---431-----1--------1000000-----------------0343322-----------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             34444332232223332222210000012233444321000000578999999999999999999878999999999999
Q gi|254780531|r  317 YVDTESTTLDSRKDLPKEIDSGYSMVTLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFI  396 (452)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~id~a~~~v~~~ra~iGa~~nrle~~~~~~  396 (452)
                          .                   ..  ................+..+|..||.++..|...|+.+||.+||||++++++
T Consensus       202 ----~-------------------~~--~~~~~~~~~~~~~~~~~~~~i~~id~Ai~~v~~~ra~lGA~~nRLe~~~~nl  256 (311)
T PRK12687        202 ----S-------------------VS--SIDIHLLTDSATDLTKLDGYIGIVDQALGSVTQASADLGATKTRIDSNSNFV  256 (311)
T ss_pred             ----C-------------------CC--CCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             ----1-------------------00--1210110111445788987999999999999999998707899999999899


Q ss_pred             HHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999999973062220258999999999999999999999999720688987525
Q gi|254780531|r  397 KLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR  451 (452)
Q Consensus       397 ~~~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~  451 (452)
                      ....+++++++|||+|+|||+|+++|+|+|||||++++||+||||.||+||+|||
T Consensus       257 ~~~~~nl~aa~grI~DADmA~Esa~l~k~QilqQag~amLaqANq~pQ~vLsLlr  311 (311)
T PRK12687        257 KSLRDAIDRGVGQLVDADMNAESTRLQALQTQQQLGIQALSIANQGSQSILSLFK  311 (311)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCC
T ss_conf             9999999986768756659999999999999999999999998457599998619


No 17 
>PRK12802 flagellin; Provisional
Probab=100.00  E-value=0  Score=415.86  Aligned_cols=277  Identities=21%  Similarity=0.314  Sum_probs=226.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             74045799999999999999999999999851223688313899999999999999999999998999999999999999
Q gi|254780531|r    2 TSILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGM   81 (452)
Q Consensus         2 ~~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l   81 (452)
                      .||+||+++++++++|++.+..|.++|+||||||||++|+|||++++++++|++++.+++||.+|+.++.+||+++|++|
T Consensus         3 m~I~tN~~a~~a~~~L~~~~~~l~~s~~rlSSGkri~~~sDDpa~~a~a~~l~s~~~~~~q~~~N~~~a~s~l~~ad~aL   82 (282)
T PRK12802          3 LTVNTNITSLTVQKNLSRASDALSTSMTRLSSGLKINSAKDDAAGLQIATRQTSQIRGQTQAIKNANDGISIAQTAEGAL   82 (282)
T ss_pred             EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             17837699999999999999999999998722055167644499999999999999989999988999998999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             999999999999875303776---30356788999999999998630012110013566654322334332221112333
Q gi|254780531|r   82 SKAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDN  158 (452)
Q Consensus        82 ~~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~~~~~~~~~  158 (452)
                      .++.++|+|||||+||++|++   .||++|+.|+++|+++|.+|+++++|||+|||.|..+...+..+...         
T Consensus        83 ~~i~~~l~R~reLavqaan~t~s~~dr~ai~~Ei~~L~~qi~~ian~t~fnG~~lf~g~~~~~~~~vg~~~---------  153 (282)
T PRK12802         83 QESTNILQRMRELAVQSRNDSNDSTDRAALNKEFTTMLDEITRIATSTTLNGKNLLDGSAGTMTFQVGANT---------  153 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEEEECCCC---------
T ss_conf             99999999999999976237899999999999999999999999874627885300588875578764788---------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             33222222222135433333221111111112233322345443322211112222112222222221111111111110
Q gi|254780531|r  159 GKVQITTIDYYLDPETVLLDSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTKKFKLATTSGAWLKAANAT  238 (452)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (452)
                                                                  +...         .+...   ...           .
T Consensus       154 --------------------------------------------~~~~---------~~~~~---~~~-----------~  166 (282)
T PRK12802        154 --------------------------------------------GQSN---------QITFG---LSA-----------S  166 (282)
T ss_pred             --------------------------------------------CCEE---------EEEEE---ECC-----------C
T ss_conf             --------------------------------------------8604---------78752---012-----------2


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             10011222101233334433222223322222100000122344443211001233211100000000111111112234
Q gi|254780531|r  239 FDQAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSDIWVRATTKNSITSDPGYTNSTVAKVGNTHYYV  318 (452)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (452)
                      +...                   ....                    .                                
T Consensus       167 ~~~~-------------------~~~~--------------------~--------------------------------  175 (282)
T PRK12802        167 FDAT-------------------GLGV--------------------G--------------------------------  175 (282)
T ss_pred             CCCC-------------------CCCC--------------------C--------------------------------
T ss_conf             3543-------------------4243--------------------2--------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             44433223222333222221000001223344432100000057899999999999999999987899999999999999
Q gi|254780531|r  319 DTESTTLDSRKDLPKEIDSGYSMVTLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKL  398 (452)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~id~a~~~v~~~ra~iGa~~nrle~~~~~~~~  398 (452)
                                                ................+..++..||.++++|...|+++|+++||||...+++..
T Consensus       176 --------------------------~~~~~~~~~~~~~~~~~~~~l~~id~ai~~v~~~ra~~Ga~~nrle~~~~~l~~  229 (282)
T PRK12802        176 --------------------------SGTLITGADSAAAETNAQAAITAIDAALQTINTTRADLGAAQNRLQSTISNLQN  229 (282)
T ss_pred             --------------------------HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             --------------------------023312442211054699999999999999999999874998899999988999


Q ss_pred             HHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999973062220258999999999999999999999999720688987525
Q gi|254780531|r  399 MRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR  451 (452)
Q Consensus       399 ~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~  451 (452)
                      ..+++++.+|+|+|+|||+|+++|+++||++|||++||+||||.||.||+|||
T Consensus       230 ~~~nl~~~~s~i~DaD~A~e~~~l~~~qi~~Qaa~a~laqANq~~q~vl~Llq  282 (282)
T PRK12802        230 INENASAARGRVQDTDFAAETAQLTKQQTLQQASTSVLAQANQLPSAVLKLLQ  282 (282)
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999998766660059999999999999999999999999676899998509


No 18 
>PRK12804 flagellin; Provisional
Probab=100.00  E-value=0  Score=411.13  Aligned_cols=296  Identities=19%  Similarity=0.299  Sum_probs=222.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             40457999999999999999999999998512236883138999999999999999999999989999999999999999
Q gi|254780531|r    3 SILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGMS   82 (452)
Q Consensus         3 ~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l~   82 (452)
                      ||+||+.++++|++|++.+++|.++|+||||||||++|+|||++++++++|++++.+++||.+|+.++.+||+++|++|.
T Consensus         2 rIt~n~~a~~al~~L~~~~~~l~~~q~rLSSGkrI~~asDDpa~~aia~~l~s~~~~~~~~~~N~~~a~s~l~tad~al~   81 (307)
T PRK12804          2 RINHNIAALNTLNRLSANNGASQKNMEKLSSGLKINRAGDDAAGLAISEKMRGQIRGLEMASKNAQDGISLIQTAEGALT   81 (307)
T ss_pred             EEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             56242999999999999999999999985411763774217999999999999999999999989999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHCCC-C---CCHHHHHHHHHHHHHHHHHHHH------HHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9999999999987530377-6---3035678899999999999863------0012110013566654322334332221
Q gi|254780531|r   83 KAIDVMSTIKNKITAGVER-G---TDSKSIQSEITQLQSQLRDIAR------GSSFNGENWLRTDLGSSTASIAKSVIGS  152 (452)
Q Consensus        83 ~~~~~l~r~relavqa~n~-~---~dr~a~~~e~~~l~~~i~~ian------~t~~nG~~l~~g~~~~~~~~~~~~~~~~  152 (452)
                      ++.++|+|||||+||++|+ +   .||++|+.||++|+++|..++|      ++.|+|+++|.|......+....... .
T Consensus        82 ~~~~il~R~rELavqaaN~Gt~s~~dr~ai~~Ei~~L~~qi~~~~n~~~i~~~t~f~G~~~~~g~~~~~~~~~~~~~~-~  160 (307)
T PRK12804         82 ETHSILQRVRELVVQAGNTGTQDGTDLGAIQEEIKALVDEIGNGTDKNGISDRTEFNGKKLLDGTFKPAAPAAGTKSL-T  160 (307)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCEEECCCCCCCCCCCCCCCCE-E
T ss_conf             999999999999998536777888899999999999999997430334023104207876125665456767777616-9


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             11233333222222222135433333221111111112233322345443322211112222112222222221111111
Q gi|254780531|r  153 FIRDDNGKVQITTIDYYLDPETVLLDSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTKKFKLATTSGAWL  232 (452)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (452)
                      +..                                +.         ..  ....         .+........       
T Consensus       161 ~~~--------------------------------g~---------~~--~~~~---------~v~~~~~~~~-------  181 (307)
T PRK12804        161 FQI--------------------------------GA---------NA--AQQL---------SVNIEAMSAD-------  181 (307)
T ss_pred             EEE--------------------------------CC---------CC--CCEE---------EEEEEECCCH-------
T ss_conf             985--------------------------------47---------77--6437---------8875423302-------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             11111010011222101233334433222223322222100000122344443211001233211100000000111111
Q gi|254780531|r  233 KAANATFDQAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSDIWVRATTKNSITSDPGYTNSTVAKVG  312 (452)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (452)
                                                   ..+.........    ..                                 
T Consensus       182 -----------------------------~~~~~~~~~~~~----~~---------------------------------  195 (307)
T PRK12804        182 -----------------------------ALGVKDADGTLV----TG---------------------------------  195 (307)
T ss_pred             -----------------------------HHCCCCCCCCCC----CC---------------------------------
T ss_conf             -----------------------------313555554212----34---------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             11223444433223222333222221000001223344432100000057899999999999999999987899999999
Q gi|254780531|r  313 NTHYYVDTESTTLDSRKDLPKEIDSGYSMVTLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQ  392 (452)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~id~a~~~v~~~ra~iGa~~nrle~~  392 (452)
                             .                   ........ ...........++...|..||.++++|...|+++||++||||+.
T Consensus       196 -------~-------------------~~~~~~~~-~~~~~~~~~~~~~~~~l~~id~al~~v~~~ra~lGA~~nrle~~  248 (307)
T PRK12804        196 -------K-------------------SVSDIDVT-KFADIAADADGGFDDQLDIVDGAIKQVSDQRSKLGAVQNRLEHT  248 (307)
T ss_pred             -------C-------------------CCCHHHHH-HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             -------2-------------------10000223-32000110010078899999999999999998868999999999


Q ss_pred             HHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999999999973062220258999999999999999999999999720688987525
Q gi|254780531|r  393 EDFIKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR  451 (452)
Q Consensus       393 ~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~  451 (452)
                      .++++...+++++++|+|+|+|||+|+++|+++|+++||+++||+|||+.||.||+|||
T Consensus       249 ~~~l~~~~~nl~~~~s~i~DaD~A~e~~~l~~~qi~~Qaa~a~laqAN~~~q~~L~Ll~  307 (307)
T PRK12804        249 INNLGASSENLTAAESRIRDVDMAKEMSEFTKNNILSQASQAMLAQANQQPQNVLQLLR  307 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             98899999999998743560069999999999999999999999998266899998519


No 19 
>COG1344 FlgL Flagellin and related hook-associated proteins [Cell motility and secretion]
Probab=100.00  E-value=0  Score=394.39  Aligned_cols=352  Identities=26%  Similarity=0.291  Sum_probs=234.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             74045799999999999999999999999851223688313899999999999999999999998999999999999999
Q gi|254780531|r    2 TSILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGM   81 (452)
Q Consensus         2 ~~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l   81 (452)
                      .||+||+.|+.++++|++.+.+|.|+++||||||||++|+|||++++++.+|++++.+++||.+|+.++.+||+++|++|
T Consensus         1 mrI~tn~~a~~~~~~l~~~~~~l~k~~~rlSSG~rI~~a~Ddaa~~~is~~l~~~~~~L~q~~~n~~~g~s~lqtae~aL   80 (360)
T COG1344           1 MRINTNMAALNALRNLNKNQSELAKSQERLSSGLRINSASDDAAGLAIALRLRSQIRGLSQAKDNAQDGISKLQTAEGAL   80 (360)
T ss_pred             CEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             96032999999999999999999999998523531478240589999999999999988999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-----CCCCC
Q ss_conf             999999999999875303776---3035678899999999999863001211001356665432233433-----22211
Q gi|254780531|r   82 SKAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKS-----VIGSF  153 (452)
Q Consensus        82 ~~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~-----~~~~~  153 (452)
                      +++.++|+|||||+||++|++   .||.+|+.|+++|+++|.+|+|.++|||+|||.|.... .++....     ....+
T Consensus        81 ~~~~~~lqrirelavqaan~t~s~~dr~~iq~Ei~~l~~el~~iAntt~fnG~~lf~G~~t~-~p~~~~~~~~~~~~~~~  159 (360)
T COG1344          81 SEISKILQRIKELAVQAANGTLSDADRAAIQKEIEQLLDELDNIANTTSFNGEYLFAGSKTD-KPFDFQNAGGETIKGSF  159 (360)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCC-CCCEECCCCCCEEEECC
T ss_conf             99999999999999986369999899999999999999999999852665885654776788-87200268762356303


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             12333332222222221354333332211111111122333223454433222111122221122222222211111111
Q gi|254780531|r  154 IRDDNGKVQITTIDYYLDPETVLLDSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTKKFKLATTSGAWLK  233 (452)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (452)
                      .....+............           ..................              ...                
T Consensus       160 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~--------------~~~----------------  198 (360)
T COG1344         160 NSDSSGTVSVGLDITNTG-----------DLSFTSLGTTAKDEPIDA--------------GDV----------------  198 (360)
T ss_pred             CCCCCCCCCCCCCCCCCC-----------CHHCCCCCCCCCCCCCCC--------------CCC----------------
T ss_conf             345544340014466543-----------011013565322245554--------------322----------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             11110100112221012333344332222233222221000001223444432110012332111000000001111111
Q gi|254780531|r  234 AANATFDQAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSDIWVRATTKNSITSDPGYTNSTVAKVGN  313 (452)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (452)
                          .............         .......+             .......  ..       ......         
T Consensus       199 ----~~~~~~~~~~~~~---------~~~~~~~~-------------~~~~~~~--~~-------~~~~~~---------  234 (360)
T COG1344         199 ----TAGPTNLFGAGAN---------AADGASLG-------------KALDAAT--TN-------TQIGAN---------  234 (360)
T ss_pred             ----CCCCCCCCCCCCC---------CCCCCCCC-------------CCCCCCC--HH-------HHCCCC---------
T ss_conf             ----1356543323332---------21101135-------------3111110--11-------000222---------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             12234444332232223332222210000012233444321000000578999999999999999999878999999999
Q gi|254780531|r  314 THYYVDTESTTLDSRKDLPKEIDSGYSMVTLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQE  393 (452)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~id~a~~~v~~~ra~iGa~~nrle~~~  393 (452)
                           .............    .......  ..... ..........+..++..||.++++|...|+++|+++|||++..
T Consensus       235 -----~~~~~~~~~~~~~----~~~~~~~--~~~~~-~~~~~~~~~~~~~~l~~id~Al~~i~~~ra~lGa~qnrl~~~~  302 (360)
T COG1344         235 -----VGQTTTLNINDGN----VMTASAA--GALAD-PGSSVATADGAQAALGTIDSALDNITSARAELGAVQNRLESAI  302 (360)
T ss_pred             -----CCCCEEECCCCCC----HHHHHHH--HHHCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             -----3443000245320----1456543--34403-5543110446887999999999999999998738999999999


Q ss_pred             HHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999999999973062220258999999999999999999999999720688987525
Q gi|254780531|r  394 DFIKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR  451 (452)
Q Consensus       394 ~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~  451 (452)
                      +++..+.+++++.+|+|+|+|||||+++|.++|+++||+++||+|||+.|+.+|+|||
T Consensus       303 ~~l~~~~~nl~~~~s~i~D~D~aee~t~l~~~q~~~Qas~~~laqan~~s~~~l~ll~  360 (360)
T COG1344         303 NNLSNQSDNLTAAESRIVDVDMAEESTELTKLQILQQASLQALAQANQLSLLVLSLLR  360 (360)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             8898899999998864007769999999999999999999999999860288897359


No 20 
>PRK12718 flgL flagellar hook-associated protein FlgL; Provisional
Probab=100.00  E-value=0  Score=383.27  Aligned_cols=147  Identities=12%  Similarity=0.126  Sum_probs=141.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             40457999999999999999999999998512236883138999999999999999999999989999999999999999
Q gi|254780531|r    3 SILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGMS   82 (452)
Q Consensus         3 ~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l~   82 (452)
                      ||+|++++...+++|.+.+++|.++|+||||||||++|||||++++++++|+..+..++||.+|++.+.+||..+|++|.
T Consensus         2 RISt~~~~~~~~~~~~~~q~~l~~~q~qlssGkri~~psDDPvaa~~~~~l~~~~~~~~qy~~N~~~a~~~L~~~e~~L~   81 (510)
T PRK12718          2 RLSTALIYQNGLNGVLNQEAAMARLQEQLSSGRRVLTPADDPLAAALAVNVSQTSSMNSNYDANRKQAEQALGAQTNTLQ   81 (510)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             35369999999999999999999999998507866882109999999999999999999999999999999998999999


Q ss_pred             HHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             99999999999875303776---30356788999999999998630012110013566654322334332
Q gi|254780531|r   83 KAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSV  149 (452)
Q Consensus        83 ~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~  149 (452)
                      ++.++|+|+|||+|+|.|++   .||++|+.|+++|+++|+.++|+++++|+|||.|+.....|+.....
T Consensus        82 ~v~~~l~~~~el~v~a~ngt~s~~dr~aia~El~~~~~~l~~laNs~d~~G~ylFaG~~~~t~Pf~~~~~  151 (510)
T PRK12718         82 SVVKNMQEMLKRVVEAGNGTMSDADRQALVIALKGAREELVGLANATDGNGQYLFSGYKGFTQPYSFDAA  151 (510)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCEECCC
T ss_conf             9999999999999985178889788999999999999999999646587887744673578998313489


No 21 
>PRK07192 flgL flagellar hook-associated protein FlgL; Reviewed
Probab=100.00  E-value=0  Score=365.58  Aligned_cols=299  Identities=16%  Similarity=0.198  Sum_probs=226.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             40457999999999999999999999998512236883138999999999999999999999989999999999999999
Q gi|254780531|r    3 SILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGMS   82 (452)
Q Consensus         3 ~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l~   82 (452)
                      ||+||+++.+.+++|++.+.+|.++|+||||||||++|||||++++++++|+.++..++||.+|+.++.+||+++|++|+
T Consensus         2 RIst~~~~~~~l~~l~~~~~~l~~~q~qlsSGkri~~~sDDp~~~~~~~~l~~~~~~~~q~~~N~~~a~~~l~~~d~aL~   81 (305)
T PRK07192          2 RISTNQLYSTMLRSIQQSQAGLMKLQQQMSTGKRILTPSDDPIASVRLLELNREQANIKQYRSNIANLSNSLSAQEGHLS   81 (305)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             56569999999999999999999999998337853894238999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99999999999875303776---303567889999999999986300121100135666543223343322211123333
Q gi|254780531|r   83 KAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDNG  159 (452)
Q Consensus        83 ~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~~~~~~~~~~  159 (452)
                      ++.++|+|||||+||++|++   .||++++.|+++|+++|..++|.++|+|+|||+|......|+............+. 
T Consensus        82 ~~~~il~r~rel~vqa~ngt~s~~dr~aia~Ei~~l~~~l~~~aNt~~~~G~ylF~G~~~~~~pf~~~~~~~~~~y~G~-  160 (305)
T PRK07192         82 GVNDQLQSVRDLLVAAGNGSLSDEDRSAMATELRSMLDSLLGLANAKDSEGRYLFSGTASNTQPITFDPAGGKYTYNGN-  160 (305)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCEEECCCCCEEEEECC-
T ss_conf             9999999999999985068898267998888999989999999874142651353254356664133378870688448-


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             32222222221354333332211111111122333223454433222111122221122222222211111111111101
Q gi|254780531|r  160 KVQITTIDYYLDPETVLLDSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTKKFKLATTSGAWLKAANATF  239 (452)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (452)
                                                     ...........           ........                   
T Consensus       161 -------------------------------~~~~~~~i~~~-----------~~~~~~~~-------------------  179 (305)
T PRK07192        161 -------------------------------SDQRQVQVGEG-----------VQLPVNVT-------------------  179 (305)
T ss_pred             -------------------------------CCCEEEEECCC-----------EEEEECCC-------------------
T ss_conf             -------------------------------76447884167-----------04430453-------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             00112221012333344332222233222221000001223444432110012332111000000001111111122344
Q gi|254780531|r  240 DQAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSDIWVRATTKNSITSDPGYTNSTVAKVGNTHYYVD  319 (452)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (452)
                        + ..  .             ..    .              +.... +        ..           .        
T Consensus       180 --g-~~--~-------------f~----~--------------~~~~~-f--------~~-----------l--------  195 (305)
T PRK07192        180 --L-QS--V-------------FE----G--------------GGLDV-L--------NA-----------L--------  195 (305)
T ss_pred             --H-HH--H-------------HC----C--------------CCHHH-H--------HH-----------H--------
T ss_conf             --8-88--7-------------52----5--------------73568-9--------99-----------9--------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             44332232223332222210000012233444321000000578999999999999999999878999999999999999
Q gi|254780531|r  320 TESTTLDSRKDLPKEIDSGYSMVTLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKLM  399 (452)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~id~a~~~v~~~ra~iGa~~nrle~~~~~~~~~  399 (452)
                                        ......+ ...............+..++..||.++++|...|+++|+++||||...+.+++.
T Consensus       196 ------------------~~~~~~l-~~~~~~~~~~~~~~~~~~~l~~ld~a~~~v~~~~a~iGa~~nrle~~~~~~~~~  256 (305)
T PRK07192        196 ------------------DKLIDDL-KTPTLPAGDPALTAAIDEALGAIDNALDNVLGTLTEVGSRQKELDLLQKNHEDM  256 (305)
T ss_pred             ------------------HHHHHHH-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             ------------------9999874-166655543336999999999999999999999999859999999999889999


Q ss_pred             HHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999973062220258999999999999999999999999720688987525
Q gi|254780531|r  400 RDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR  451 (452)
Q Consensus       400 ~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~  451 (452)
                      .+++++.+|+|+|+||||++++|++.|+.+||+++++++.++     ||||.
T Consensus       257 ~~~l~~~~s~i~d~D~a~a~t~l~~~q~~~qAs~~~~a~i~~-----lSL~d  303 (305)
T PRK07192        257 KLQNAKILSDLQDLDYAEAYTDLSNQMAALEATQKTFVKVNS-----LSLFN  303 (305)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCHHH
T ss_conf             999999987754557999999999999999999999998816-----73873


No 22 
>PRK07701 flgL flagellar hook-associated protein FlgL; Validated
Probab=100.00  E-value=0  Score=365.09  Aligned_cols=294  Identities=15%  Similarity=0.146  Sum_probs=222.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             40457999999999999999999999998512236883138999999999999999999999989999999999999999
Q gi|254780531|r    3 SILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGMS   82 (452)
Q Consensus         3 ~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l~   82 (452)
                      ||+||+.+.+++++|++.+++|.++|+||||||||++|||||++++++++|+.++..++||.+|+.++.+||+++|++|.
T Consensus         2 RIst~~~~~~~~~~l~~~~~~l~~~~~qlsSGkri~~~sDDp~~~~~~~~l~~~~~~~~q~~~N~~~a~s~l~~~e~~L~   81 (301)
T PRK07701          2 RVTQGMIANNSLRNINKSLEKLDKYQEQLSTGKKITKPSDDPVVAMKSLRYRTDLAQVEQYQRNASDAKNWLENTESALN   81 (301)
T ss_pred             EECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             71649999999999999999999999987336852780108999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99999999999875303776---303567889999999999986300121100135666543223343322211123333
Q gi|254780531|r   83 KAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDNG  159 (452)
Q Consensus        83 ~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~~~~~~~~~~  159 (452)
                      ++.++|+|||||+||++|++   .||++++.|+++|+++|..++| ++|+|+|||+|......|+........       
T Consensus        82 ~~~~~l~r~rel~vqa~ngt~s~~dr~~ia~E~~~l~~~l~~~aN-t~~~G~ylF~G~~~~~~pf~~~~~~~~-------  153 (301)
T PRK07701         82 EATDILQRARELAVQAANGTNTEEDRQAIAQEIEQLKDQLIQIAN-TQVNGRYIFNGTNTDTPPVTENGDGTY-------  153 (301)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-CCCCCEEEECCCCCCCCCEECCCCCCE-------
T ss_conf             999999999999998605999877799999999988999999970-551781320575567764011787614-------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             32222222221354333332211111111122333223454433222111122221122222222211111111111101
Q gi|254780531|r  160 KVQITTIDYYLDPETVLLDSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTKKFKLATTSGAWLKAANATF  239 (452)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (452)
                        ...   +.                   .............           .......                    
T Consensus       154 --~~~---~~-------------------~~~~~~~~~i~~g-----------~~~~~n~--------------------  178 (301)
T PRK07701        154 --TFE---NS-------------------TDSSDVKIEISKG-----------VKINVNV--------------------  178 (301)
T ss_pred             --EEE---EC-------------------CCCCEEEEEECCC-----------CEEEECC--------------------
T ss_conf             --566---31-------------------6763068884277-----------1577315--------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             00112221012333344332222233222221000001223444432110012332111000000001111111122344
Q gi|254780531|r  240 DQAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSDIWVRATTKNSITSDPGYTNSTVAKVGNTHYYVD  319 (452)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (452)
                       .+                    .        .....    ... ..                                 
T Consensus       179 -~g--------------------~--------~~f~~----~~~-~~---------------------------------  191 (301)
T PRK07701        179 -DG--------------------N--------SAFGG----DSG-GG---------------------------------  191 (301)
T ss_pred             -CH--------------------H--------HHHCC----CCC-CC---------------------------------
T ss_conf             -54--------------------8--------76424----355-53---------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             44332232223332222210000012233444321000000578999999999999999999878999999999999999
Q gi|254780531|r  320 TESTTLDSRKDLPKEIDSGYSMVTLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKLM  399 (452)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~id~a~~~v~~~ra~iGa~~nrle~~~~~~~~~  399 (452)
                                     ......     ...............+..++..||.++++|...|+++|+++||||...++++..
T Consensus       192 ---------------~~i~~~-----l~~~~~~l~~~~~~~~~~~l~~id~a~~~v~~~ra~~Ga~~nrle~~~~~~~~~  251 (301)
T PRK07701        192 ---------------QNLFEM-----LDNLENALESGTHTGVSNALGDIDQFINNVLAERAELGARSNRLELIENRLSDQ  251 (301)
T ss_pred             ---------------HHHHHH-----HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             ---------------049998-----999998742677889999999999999999999998618999999999889999


Q ss_pred             HHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999973062220258999999999999999999999999720688987525
Q gi|254780531|r  400 RDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR  451 (452)
Q Consensus       400 ~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~  451 (452)
                      .+++++.+|+|+|+|||+|+++|++.|+.+||++++++|..+     ||||.
T Consensus       252 ~~~l~~~~s~i~D~D~a~a~~~l~~~q~~~qAa~~~~a~i~q-----~SL~d  298 (301)
T PRK07701        252 EINATKLLSDNEDVDLAEVITDLKTQENVYRAALAVGARIIQ-----PSLVD  298 (301)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CHHHH
T ss_conf             999999988775545999999999999999999999998835-----60988


No 23 
>PRK08027 flgL flagellar hook-associated protein FlgL; Reviewed
Probab=100.00  E-value=0  Score=341.38  Aligned_cols=309  Identities=13%  Similarity=0.151  Sum_probs=226.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             40457999999999999999999999998512236883138999999999999999999999989999999999999999
Q gi|254780531|r    3 SILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGMS   82 (452)
Q Consensus         3 ~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l~   82 (452)
                      ||.|++++.+.+.+|++.+.+|.++|+||||||||++|||||+++.++++|+..+..++||.+|+..+.+||..+|++|.
T Consensus         2 RIst~~~~~~~~~~l~~~~~~l~~~q~qlssGk~i~~~SDDP~~~~~~~~l~~~~~~~~qy~~n~~~a~~~l~~~e~~L~   81 (317)
T PRK08027          2 RLSTQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYTLARTFATQKVSLEESVLS   81 (317)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             17669999999999999999999999998607866881019999999999999999999999999999999998999999


Q ss_pred             HHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99999999999875303776---303567889999999999986300121100135666543223343322211123333
Q gi|254780531|r   83 KAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDNG  159 (452)
Q Consensus        83 ~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~~~~~~~~~~  159 (452)
                      ++.++|+|+|||+|++.|++   .||++++.|+++|+++|..++|.++++|+|||+|......|+.....  .+. ....
T Consensus        82 ~~~~~l~~~rel~v~a~n~t~~~~~r~a~a~ei~~l~~~l~~~aN~~~~~G~ylF~G~~~~t~Pf~~~~~--~y~-G~~~  158 (317)
T PRK08027         82 QVTTAIQSAQEKIVYAGNGTLSDDDRASLATDLQGLRDQLLNLANTTDGNGRYIFAGYKTEKAPFDEATG--GYV-GGTE  158 (317)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCC--CCC-CCCC
T ss_conf             9999999999999975068998778999999999999999999726476886445887789998406898--723-7876


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             32222222221354333332211111111122333223454433222111122221122222222211111111111101
Q gi|254780531|r  160 KVQITTIDYYLDPETVLLDSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTKKFKLATTSGAWLKAANATF  239 (452)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (452)
                      .+...              .........+.            .+....                                
T Consensus       159 ~~~~~--------------v~~~~~~~~~~------------~G~~vf--------------------------------  180 (317)
T PRK08027        159 SITQQ--------------VDAARSMVIGH------------TGDQIF--------------------------------  180 (317)
T ss_pred             CEEEE--------------CCCCCEEEECC------------CCHHHH--------------------------------
T ss_conf             64463--------------16763244057------------711555--------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             00112221012333344332222233222221000001223444432110012332111000000001111111122344
Q gi|254780531|r  240 DQAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSDIWVRATTKNSITSDPGYTNSTVAKVGNTHYYVD  319 (452)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (452)
                              ..+.......   ... .                ......                                
T Consensus       181 --------~~~~~~~~~~---~~~-~----------------~~~~~i--------------------------------  200 (317)
T PRK08027        181 --------DSITSNAVPE---PDG-S----------------ASETNL--------------------------------  200 (317)
T ss_pred             --------HCCCCCCCCC---CCC-C----------------CCCCCH--------------------------------
T ss_conf             --------0266566568---888-8----------------652329--------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             443322322233322222100000122-3344432100000057899999999999999999987899999999999999
Q gi|254780531|r  320 TESTTLDSRKDLPKEIDSGYSMVTLNI-TRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKL  398 (452)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~al~~id~a~~~v~~~ra~iGa~~nrle~~~~~~~~  398 (452)
                                    +.........+.. ..............+..++..|+.++++|...|+++|+|+||||...+.+++
T Consensus       201 --------------f~~ld~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~a~~~v~~~~a~iG~r~n~le~~~~~~~~  266 (317)
T PRK08027        201 --------------FAMLDTAIAALKTPVAGSDADKETAAAALDKTNRGLKNSLNNVLTVRAELGTQLNELESLDSLGSD  266 (317)
T ss_pred             --------------HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             --------------999999999872745688401568999999999999999999999999998999999999976677


Q ss_pred             HHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999973062220258999999999999999999999999720688987525
Q gi|254780531|r  399 MRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR  451 (452)
Q Consensus       399 ~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~  451 (452)
                      ..+++++.+|++||+||||++++|++.|+.+||+++++++..+     ||||.
T Consensus       267 ~~l~~~~~~S~~eD~D~aeaisel~~~q~alqAa~~~faki~~-----lSLfd  314 (317)
T PRK08027        267 RALGQKQQMSDLVDVDWNSAISSYVMQQAALQASYKTFTDMQG-----MSLFQ  314 (317)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCHHH
T ss_conf             9989999987613658999999999999999999999999834-----73987


No 24 
>PRK08073 flgL flagellar hook-associated protein FlgL; Validated
Probab=100.00  E-value=0  Score=340.08  Aligned_cols=281  Identities=11%  Similarity=0.156  Sum_probs=221.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             40457999999999999999999999998512236883138999999999999999999999989999999999999999
Q gi|254780531|r    3 SILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGMS   82 (452)
Q Consensus         3 ~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l~   82 (452)
                      ||.||+.+.+++++|++.+.+|.++|+||||||||++|||||++++++++|+.++..++||.+|+.++.+||+++|++|+
T Consensus         2 RItt~~~~~~~l~~l~~~~~~l~~~q~qissGkki~~~sDDP~~~~~~~~l~~~~~~~~qy~~N~~~a~~~l~~~e~aL~   81 (287)
T PRK08073          2 RVSTFQNANWAKNQLMDLNVQQQYHRNQVTSGKKNLSMSEDPLAASKSFAIQHSLANIEQMQKDVADSKNVLTQTENTLS   81 (287)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             06629999999999999999999999998538867980008999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             999999999998753037763---03567889999999999986300121100135666543223343322211123333
Q gi|254780531|r   83 KAIDVMSTIKNKITAGVERGT---DSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDNG  159 (452)
Q Consensus        83 ~~~~~l~r~relavqa~n~~~---dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~~~~~~~~~~  159 (452)
                      ++.++|+|+|||+||++|++.   ||++++.|+++|+++|..++|. +++|+|||+|......|+....   .+.+    
T Consensus        82 ~~~~~l~r~~el~vqa~ngt~s~~dr~aia~Ei~~l~~~l~~~aNt-~~~G~ylF~G~~~~~~pf~~d~---ty~G----  153 (287)
T PRK08073         82 GVSKSLTRVDQLVLQALNGTNDEKELKAIGAEIDQILKQVVYLANT-KEQGRYIFGGDSAEKKPFTEDG---TYQG----  153 (287)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCEECCCCCCCCCCCCCCC---CCCC----
T ss_conf             9999999999999987168999999999999999999999998527-5478310068656778601455---5437----


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             32222222221354333332211111111122333223454433222111122221122222222211111111111101
Q gi|254780531|r  160 KVQITTIDYYLDPETVLLDSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTKKFKLATTSGAWLKAANATF  239 (452)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (452)
                                                    ...........    .         ..+                      
T Consensus       154 ------------------------------~~~~~~~~i~~----~---------~~v----------------------  168 (287)
T PRK08073        154 ------------------------------GTNDVNWRLND----G---------YEV----------------------  168 (287)
T ss_pred             ------------------------------CCCCEEEECCC----C---------EEE----------------------
T ss_conf             ------------------------------77660354167----6---------257----------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             00112221012333344332222233222221000001223444432110012332111000000001111111122344
Q gi|254780531|r  240 DQAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSDIWVRATTKNSITSDPGYTNSTVAKVGNTHYYVD  319 (452)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (452)
                               ...          ..                     +...+        .                    +
T Consensus       169 ---------~~~----------~~---------------------g~~~~--------~--------------------~  180 (287)
T PRK08073        169 ---------KAF----------RN---------------------GEALL--------T--------------------P  180 (287)
T ss_pred             ---------EEE----------CC---------------------CHHHH--------H--------------------H
T ss_conf             ---------730----------36---------------------21676--------7--------------------8


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             44332232223332222210000012233444321000000578999999999999999999878999999999999999
Q gi|254780531|r  320 TESTTLDSRKDLPKEIDSGYSMVTLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKLM  399 (452)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~id~a~~~v~~~ra~iGa~~nrle~~~~~~~~~  399 (452)
                                       ....     ...............+..++..++.++++|...|+++|+++||||...+.+++.
T Consensus       181 -----------------~~~~-----l~~l~~al~~~d~~~~~~~l~~~~~~~d~v~~~~a~vGar~nrle~~~~~~~~~  238 (287)
T PRK08073        181 -----------------VIKT-----LKKMSDAMQKGDQKALQPLLEENKKNLDGIINRTTEVGSTMNTVETFKTILSEQ  238 (287)
T ss_pred             -----------------HHHH-----HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             -----------------9999-----999999875777878999999999999999999999989999999999888889


Q ss_pred             HHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999973062220258999999999999999999999999720688987525
Q gi|254780531|r  400 RDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR  451 (452)
Q Consensus       400 ~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~  451 (452)
                      .+++++.+|+|||+||||++++|++.|+.+||+++++++..+     ||||-
T Consensus       239 ~~~l~~~~S~ieD~D~Aeai~~l~~~~~~lqAal~~~aki~q-----~SL~d  285 (287)
T PRK08073        239 NLALQENRKEIEDVDLAVAISDLAYINATYEATLKAVSTMSK-----TSILD  285 (287)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCHHH
T ss_conf             999999887755546999999999999999999999998705-----51762


No 25 
>PRK08913 flgL flagellar hook-associated protein FlgL; Validated
Probab=100.00  E-value=0  Score=303.20  Aligned_cols=298  Identities=17%  Similarity=0.165  Sum_probs=223.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             97404579999999999999999999999985122368831389999999999999999999999899999999999999
Q gi|254780531|r    1 MTSILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAG   80 (452)
Q Consensus         1 m~~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~   80 (452)
                      |.||+|++++.+.|.+|++.+.+|.++|+|||||||+++|||||+++.+++.|+..+..++||++|+..+.+||...|++
T Consensus         2 ~MRist~~~~~~~l~~i~~~q~~l~~~q~qlsTGk~~~~~sddp~~~~~~l~l~~~~~~~~qy~~n~~~a~~~l~~~~~a   81 (302)
T PRK08913          2 IMRVATFANSSQMIAGALRTQQTMASLQIQESSGLKSESFAGLGASAQQAVNLQVSVTRAQSYIDAATLAQSKVEVMYSA   81 (302)
T ss_pred             CEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             15754599999999999999999999999971487378866478999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9999999999999875303776-303567889999999999986300121100135666543223343322211123333
Q gi|254780531|r   81 MSKAIDVMSTIKNKITAGVERG-TDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDNG  159 (452)
Q Consensus        81 l~~~~~~l~r~relavqa~n~~-~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~~~~~~~~~~  159 (452)
                      |+++.++++|+|++++++.|++ .+|.+++.|++++++++..++| ++++|+|||+|......|+.....         +
T Consensus        82 L~~~~~~~~~~~~l~v~a~~~t~~~~~a~a~e~~~~~~~lv~~~N-t~~~GrYlFsGt~t~t~P~~~~~~---------~  151 (302)
T PRK08913         82 VSQIADLVQQLRSSLSAASTGTSTDATSAASSAQQALTQMASLLN-TQYGGQYVFAGADTTTAPVDFSSF---------A  151 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCCCCEEEECCCCCCCCCEEECCC---------C
T ss_conf             999999999999999861489855799999999999999999860-744986255170289887321576---------6


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             32222222221354333332211111111122333223454433222111122221122222222211111111111101
Q gi|254780531|r  160 KVQITTIDYYLDPETVLLDSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTKKFKLATTSGAWLKAANATF  239 (452)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (452)
                      .....                    .               ......  .+.....                        
T Consensus       152 ~~~~~--------------------~---------------~~~~~~--~~~~g~~------------------------  170 (302)
T PRK08913        152 SVAGD--------------------S---------------ASSADT--SYYVGDD------------------------  170 (302)
T ss_pred             CCCCC--------------------C---------------CCCCCC--EEEECCC------------------------
T ss_conf             55677--------------------7---------------765553--2773587------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             00112221012333344332222233222221000001223444432110012332111000000001111111122344
Q gi|254780531|r  240 DQAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSDIWVRATTKNSITSDPGYTNSTVAKVGNTHYYVD  319 (452)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (452)
                          ......+...            .......        ...  +.                                
T Consensus       171 ----~~~~~~i~~~------------~~~~~~~--------~a~--~~--------------------------------  192 (302)
T PRK08913        171 ----ELTSVRVSAT------------QSVAYGV--------TAD--NS--------------------------------  192 (302)
T ss_pred             ----CEEEEEECCC------------CEEECCC--------CCC--CH--------------------------------
T ss_conf             ----2578885587------------4032377--------888--47--------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             44332232223332222210000012233444321000000578999999999999999999878999999999999999
Q gi|254780531|r  320 TESTTLDSRKDLPKEIDSGYSMVTLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKLM  399 (452)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~id~a~~~v~~~ra~iGa~~nrle~~~~~~~~~  399 (452)
                                      ..........   ............+..++..|+.++++|...|+++|+++||+|...+.++..
T Consensus       193 ----------------~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~l~~a~~~l~~~~a~lG~~~~rle~~~~~~~~~  253 (302)
T PRK08913        193 ----------------AFEDVMRALM---LVANSSSLSSSTLSSALDLASTATDDLGDVQSRLSNAASRITAASSLQTEY  253 (302)
T ss_pred             ----------------HHHHHHHHHH---HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             ----------------8999999999---764478754799999999999999999999999809999999999878999


Q ss_pred             HHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999973062220258999999999999999999999999720688987525
Q gi|254780531|r  400 RDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR  451 (452)
Q Consensus       400 ~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~  451 (452)
                      ...++..+|.+||+|++|++++|+.+|+.+||+.++.++..+     ||||.
T Consensus       254 ~~~l~~~~s~ledvD~aea~t~l~~~~~~lqAs~~~~ari~q-----lSL~d  300 (302)
T PRK08913        254 KSFAETLLGDLTDVDVAAVTAQLSTYQAQLTASYSAISKMKS-----LNLAS  300 (302)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCHHH
T ss_conf             999999988635759999999999999999999999998605-----60862


No 26 
>PRK08412 flgL flagellar hook-associated protein FlgL; Validated
Probab=100.00  E-value=1.4e-45  Score=297.96  Aligned_cols=142  Identities=12%  Similarity=0.145  Sum_probs=132.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             40457999999999999999999999998512236883138999999999999999999999989999999999999999
Q gi|254780531|r    3 SILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGMS   82 (452)
Q Consensus         3 ~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l~   82 (452)
                      ||-.+..+..-++++.+.+++|.++++|||||+||+.|+|||+++.+.+|||.++..++||++|++.|+++++.+|.+|.
T Consensus         2 rvt~~~~~~~~~~~~~~~~~~l~~~~~q~ssg~kI~~~~dd~~~~~~~~~l~~~i~~l~q~~~~~~~a~~~~~~td~aL~   81 (777)
T PRK08412          2 RVTFGSKYNQMNNYQNALQNKLNDANTQIASGLKIQYGYQDSDINNQNLKLQYEENTLDQGIDVAQNAYTSTLNTDKALQ   81 (777)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             31221338999998878899999999986426723364547466655531566776578999878879999987999999


Q ss_pred             HHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             99999999999875303776---3035678899999999999863001211001356665432233
Q gi|254780531|r   83 KAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASI  145 (452)
Q Consensus        83 ~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~  145 (452)
                      +++++|+|+|||+|||+|++   .+|++|+.|+++|+++|++|| +|.++|+|||+|+.....|+.
T Consensus        82 e~~~~l~~~k~~~vqaand~~~~~sr~aia~el~~lk~~~~~ia-nt~~~g~~lf~G~~~~~kpf~  146 (777)
T PRK08412         82 EFSKTMEAFKTKLIQAANDVHSETSREAIANDLERLKEHMINIA-NTSIGGEFLFGGSKVDRPPFD  146 (777)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCCCCEEEECCCCCCCCCCC
T ss_conf             99999999999999860256887789999999999999998642-255676798625545668646


No 27 
>TIGR02550 flagell_flgL flagellar hook-associated protein 3; InterPro: IPR013384    FlgL (or HAP3) proteins are flagellar hook-associated proteins encoded in bacterial flagellar operons. An N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved in this family, though members show considerable length heterogeneity between these two well-conserved terminal regions - proteins in this family range from 287 to more than 500 residues in length. ; GO: 0001539 ciliary or flagellar motility, 0009424 flagellin-based flagellum hook.
Probab=100.00  E-value=2.7e-36  Score=239.55  Aligned_cols=384  Identities=14%  Similarity=0.082  Sum_probs=237.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             40457999999999999999999999998512236883138999999999999999999999989999999999999999
Q gi|254780531|r    3 SILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGMS   82 (452)
Q Consensus         3 ~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l~   82 (452)
                      +|.+++.+...++++.+.+.++.+.++|++|||||.+|+|||+++.++++++.....++||.+|+..+.+||+.+|+.|.
T Consensus         1 r~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~g~~~~~~sddp~~~~~~~~~~~~~~~~~q~~~n~~~~~~~l~~~~~~l~   80 (393)
T TIGR02550         1 RVSTNMLYNNSLNSITNNQSRLAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALS   80 (393)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             96513567777777777777888877776420110244222578888887777777766666667777766665544444


Q ss_pred             HHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-CCCCCC
Q ss_conf             99999999999875303776---30356788999999999998630012110013566654322334332221-112333
Q gi|254780531|r   83 KAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGS-FIRDDN  158 (452)
Q Consensus        83 ~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~~~-~~~~~~  158 (452)
                      ++.+.++|+||+++++.|++   .+|.+++.|++++++++..++|.++.+|+|+|.|......++........ .+....
T Consensus        81 ~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~l~~~an~~d~~g~y~f~g~~~~~~pf~~~~~~~~~~~~g~~  160 (393)
T TIGR02550        81 SVGDLLQRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLLSLANTKDGNGRYIFSGTKTDTPPFSEDGGGSGVTYAGDG  160 (393)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             45677888888887642255787789999999999998777641011357632204655565553214665431003653


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             33222222222135433333221111111112233322345443322211112222112222222221111111111110
Q gi|254780531|r  159 GKVQITTIDYYLDPETVLLDSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTKKFKLATTSGAWLKAANAT  238 (452)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (452)
                       ....................... .... .. .......... . .. .. . . ... ............        
T Consensus       161 -~~~~~~~~~~~~~~~~~g~~~~~-~~~~-~~-~~~~~~~~~~-~-~~-~~-~-~-~~~-~~~~~~~~~~~~--------  221 (393)
T TIGR02550       161 -QRIVQVASSRSMPIGLPGDKVFM-SIPN-DG-YVVNAAASQT-D-LL-AA-I-L-VDT-IGRYTFVDPLEA--------  221 (393)
T ss_pred             -CCCEEEECCCCCCCCCCCCHHCC-CCCC-CC-CCCCCCCCCC-C-CH-HH-H-C-CCC-CCCCCCCCCCCC--------
T ss_conf             -00012302341013444200101-2443-32-2110001121-1-00-00-0-0-110-112111112222--------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             10011222101233334433222223322222100000122344443211001233211100000000111111112234
Q gi|254780531|r  239 FDQAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSDIWVRATTKNSITSDPGYTNSTVAKVGNTHYYV  318 (452)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (452)
                         . ...... ..   .. .. . . .............. ......            ..      . .    ...  
T Consensus       222 ---~-~~~~~~-~~---~~-~~-~-~-~~~~~~~~~~~~~~-~~~~~~------------~~------~-~----~~~--  263 (393)
T TIGR02550       222 ---G-LELLGV-LA---ND-AV-S-A-TDIITESLEIGTTG-IKIKLN------------DE------L-S----SVL--  263 (393)
T ss_pred             ---C-HHHHCC-CC---CC-CC-C-C-CCCHHHHHHCCCCC-CCCCCC------------CC------C-C----CCC--
T ss_conf             ---0-011000-01---01-00-0-0-00000000002121-123332------------10------0-0----100--


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             444332232223332222210000012233444321---00000057899999999999999999987899999999999
Q gi|254780531|r  319 DTESTTLDSRKDLPKEIDSGYSMVTLNITRHANTDA---YNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDF  395 (452)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~al~~id~a~~~v~~~ra~iGa~~nrle~~~~~  395 (452)
                      . . . ..+...........................   ..........+..+|.+++++...|+.+|+++|+++.....
T Consensus       264 ~-~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  340 (393)
T TIGR02550       264 T-G-L-APPGNLEKSVFSTGDDLFAALKSLEDALSSGDQAAILAALSASLNELDKALDNVLSARAEVGARLNRLELLESR  340 (393)
T ss_pred             C-C-C-CCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             0-1-2-21001101210025789999887654202320356677777887667767766666555543356666666654


Q ss_pred             HHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999999973062220258999999999999999999999999720688987525
Q gi|254780531|r  396 IKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR  451 (452)
Q Consensus       396 ~~~~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~  451 (452)
                      +......+++.+|+++|+|+++++++|.+.+..+||++..+++..+     ++||.
T Consensus       341 ~~~~~~~~~~~~s~~~d~d~~~~i~~~~~~~~~~~a~~~~~~~~~~-----~sl~~  391 (393)
T TIGR02550       341 LSEQKLVLTEVLSDLEDVDLAEAISDLTMQQSALQAALKAFAKIQQ-----LSLFD  391 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
T ss_conf             3444556666655544102678888888889999999987666520-----02220


No 28 
>pfam00669 Flagellin_N Bacterial flagellin N-terminal helical region. Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.
Probab=100.00  E-value=2.2e-36  Score=240.00  Aligned_cols=135  Identities=31%  Similarity=0.411  Sum_probs=131.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             04579999999999999999999999985122368831389999999999999999999999899999999999999999
Q gi|254780531|r    4 ILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGMSK   83 (452)
Q Consensus         4 i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l~~   83 (452)
                      |+||+.++++|++|++.+.+|.++|+||||||||++|+|||++++++++|+.++..++||.+|+.++.+||+++|++|++
T Consensus         1 I~tN~~a~~al~~l~~~~~~l~~~~~qlSTGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~N~~~a~~~l~~~e~al~~   80 (139)
T pfam00669         1 ISTNALALAARRTLNRNQAELQKAQEELSTGLRIDSALDLGAGTAISVSLRSQIRGLSQAVRNNNLGISRLQTAQGALSE   80 (139)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             96519999999999999999999999987268457844269999999999999999999999899999999978899999


Q ss_pred             HHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             9999999999875303776---303567889999999999986300121100135666
Q gi|254780531|r   84 AIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDL  138 (452)
Q Consensus        84 ~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~  138 (452)
                      +.++|.|||||+|+++|++   .||.+++.|+++|+++|..++|+++|+|+|||+|+.
T Consensus        81 i~~~l~r~kel~v~a~n~~~~~~dr~ai~~Ei~~l~~~i~~~an~t~~nG~~lFsGt~  138 (139)
T pfam00669        81 VTDILQRLRELAVQAANGGNSDIDRASAQAEIQQLTSELNNIANTTSFNGEYLFSGTN  138 (139)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             9999999999999884689999999999999999999999999857718730128969


No 29 
>PRK06008 flgL flagellar hook-associated protein FlgL; Validated
Probab=100.00  E-value=8.5e-34  Score=224.24  Aligned_cols=343  Identities=14%  Similarity=0.149  Sum_probs=225.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             74045799999999999999999999999851223688313899999999999999999999998999999999999999
Q gi|254780531|r    2 TSILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGM   81 (452)
Q Consensus         2 ~~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l   81 (452)
                      ++|+|-.....-...+.+.|.+|.+++++++||||...+.+.|....+++.|+..+..+++|+++...+..||...+.+|
T Consensus         4 ~~Ist~~~~~~lr~~~~~~q~~l~~~~~E~sTG~~ad~~~~lg~~~~~~~~l~~~~~~~~~~~~~~~~~~~rl~~~q~aL   83 (348)
T PRK06008          4 SFISTYALQNALRLTIAKLQAELVKAQTEATTGRYADVGLSLGSKTGRSVSLRREYDRLASLTDSNSLVTQRLTATQTAL   83 (348)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             00128999999999999999999999998713710565431126689999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99999999999987530377630356788999999999998630012110013566654322334332221112333332
Q gi|254780531|r   82 SKAIDVMSTIKNKITAGVERGTDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDNGKV  161 (452)
Q Consensus        82 ~~~~~~l~r~relavqa~n~~~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~  161 (452)
                      +++.+..+++++..+.+.++..+...++.|+++.++++..++| ++++|+|||.|......|........+.....   +
T Consensus        84 ~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~l~~lv~~lN-t~~~G~yLFaG~~tdt~P~~d~~~~~s~~~~~---~  159 (348)
T PRK06008         84 GQLIDAAQSFLNDLLAANASAETGSVVAQSARSALSSLTSTLN-TSVNGEYLFAGINTDVKPLTDYTAPGSAAKTA---V  159 (348)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH-CCCCCEEEECCCCCCCCCCCCCCCCCCCCHHH---H
T ss_conf             9999999999999982468886088999999999999999872-65388522268678988753345676520244---7


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             22222222135433333221111111112233322345443322211112222112222222221111111111110100
Q gi|254780531|r  162 QITTIDYYLDPETVLLDSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTKKFKLATTSGAWLKAANATFDQ  241 (452)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (452)
                                      +...  ....+.....  ............. +      ...              .....+..
T Consensus       160 ----------------d~~~--~~~~~~~~~~--~~~a~it~~~~~~-~------~~~--------------~~~~~f~~  198 (348)
T PRK06008        160 ----------------DTAF--QTFFGFAQDD--PAVSNITAAQMQT-F------LDG--------------TFAPLFND  198 (348)
T ss_pred             ----------------HHHH--HHHHCCCCCC--CCHHHCCHHHHHH-H------CCC--------------CCCCCCCC
T ss_conf             ----------------7777--6540367776--2043200566643-3------046--------------42113467


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             11222101233334433222223322222100000122344443211001233211100000000111111112234444
Q gi|254780531|r  242 AKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSDIWVRATTKNSITSDPGYTNSTVAKVGNTHYYVDTE  321 (452)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (452)
                      .   .+...-.......                   ..........                   ...          ..
T Consensus       199 ~---~~~~~~s~as~~~-------------------~~~~I~~~~~-------------------v~~----------s~  227 (348)
T PRK06008        199 A---NWSANWSSASDTN-------------------ITSRISPTET-------------------AET----------ST  227 (348)
T ss_pred             C---CCCCCCCCCCCCC-------------------CCEECCCCCE-------------------EEC----------CC
T ss_conf             6---3011435577765-------------------2101378863-------------------303----------66


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             33223222333222221000001223344432100000057899999999999999999987899999999999999999
Q gi|254780531|r  322 STTLDSRKDLPKEIDSGYSMVTLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKLMRD  401 (452)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~id~a~~~v~~~ra~iGa~~nrle~~~~~~~~~~~  401 (452)
                      ........      .........................+..++..++.+++++...|+++|++++|+|...+.++....
T Consensus       228 ~An~~~~r------~~~~~~~~~a~~~~~~l~~~a~~~~~~~a~~~l~~a~~~l~~~ra~lG~~q~rie~a~~r~~~~~~  301 (348)
T PRK06008        228 SANAEGFR------KLAMAYVMVSELGDIGLSSEAQQTVTDKAITLTGQAITGLTTQQATLGLAQSRVKKANTRLDAQIK  301 (348)
T ss_pred             CCCCHHHH------HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             78868899------999999998502578898678999999999999999999999999865999999999998999999


Q ss_pred             HHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99973062220258999999999999999999999999720688987525
Q gi|254780531|r  402 AVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR  451 (452)
Q Consensus       402 ~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~  451 (452)
                      .++..++.+||+|++|++++|+.+|+.+||+.++.++-.+     ||||.
T Consensus       302 ~l~~~~s~le~vD~~Ea~t~l~~~q~qLeasy~~tarl~~-----LSL~n  346 (348)
T PRK06008        302 LLKGQILDLEGVDPYEASTRVNALQTQIETSYSLTSQLQQ-----LSLVN  346 (348)
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CHHHH
T ss_conf             9999987421768999999999999999999999999851-----32974


No 30 
>pfam07164 consensus
Probab=100.00  E-value=6.9e-33  Score=218.68  Aligned_cols=342  Identities=15%  Similarity=0.146  Sum_probs=222.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             74045799999999999999999999999851223688313899999999999999999999998999999999999999
Q gi|254780531|r    2 TSILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGM   81 (452)
Q Consensus         2 ~~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l   81 (452)
                      ++|+|-........++.+.|.+|.+++++++|||+...|++.|....+.+.|+..+..+++|+++...+..||...+.+|
T Consensus         4 ~~ist~~~~~~~r~~~~r~Q~~l~~~~~E~sTG~~ad~~~~lg~~~~~~~~L~~~~~~l~~~~~~~~~a~~rl~~~q~aL   83 (347)
T pfam07164         4 SFISTLALQNAMRSTILKNQAELVKAQTEATTGRHADVGLALGARTARSVSLRRDLDRLSVLVDTNSLVTQRLAATQTAL   83 (347)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             20218988989999999999999999998703820564001033389999899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99999999999987530377630356788999999999998630012110013566654322334332221112333332
Q gi|254780531|r   82 SKAIDVMSTIKNKITAGVERGTDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDNGKV  161 (452)
Q Consensus        82 ~~~~~~l~r~relavqa~n~~~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~  161 (452)
                      ++|.+.++++|+..+.+.+++.....++.+.++.++++..++| ++++|+|||.|......|.......         ..
T Consensus        84 ~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~l~~li~~LN-t~~~GryLFaG~~Td~~Pl~~~~~~---------~~  153 (347)
T pfam07164        84 GQMAEAAQEFLKDLVTATSSDAPTLTVVSQASSALQNFTSALN-TSFNGEYLFAGINTDVKPIDDYADG---------SA  153 (347)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH-CCCCCEEEECCCCCCCCCCCCCCCC---------CC
T ss_conf             9999999999999984068985179999999999999999984-3508852326867898865245767---------53


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             22222222135433333221111111112233322345443322211112222112222222221111111111110100
Q gi|254780531|r  162 QITTIDYYLDPETVLLDSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTKKFKLATTSGAWLKAANATFDQ  241 (452)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (452)
                      ........      ..       ..++...      ..... ..........   .....+             ...+..
T Consensus       154 ~~~~~~~~------~~-------~~~~~~~------~~~~~-a~~t~~~~~~---~~~~~~-------------~~~~~~  197 (347)
T pfam07164       154 AKNAVDTA------FA-------AAFGFAQ------TDPSV-ASITKAQMED---FLTTTF-------------AAQFND  197 (347)
T ss_pred             CCCHHHHH------HH-------HHHHCCC------CCCHH-HHHHHHHHHH---HHCCCC-------------CCCCCC
T ss_conf             20002368------88-------8760367------87015-4411777765---533543-------------212455


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             11222101233334433222223322222100000122344443211001233211100000000111111112234444
Q gi|254780531|r  242 AKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSDIWVRATTKNSITSDPGYTNSTVAKVGNTHYYVDTE  321 (452)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (452)
                      .   .+......        .....           ...........                              ...
T Consensus       198 ~---~~~~~~s~--------~s~~~-----------~~~~is~~e~~------------------------------~~~  225 (347)
T pfam07164       198 A---FWATNWSK--------ASDQN-----------MTSRISTTEVA------------------------------DTS  225 (347)
T ss_pred             C---CCCCCCCC--------CCCCC-----------CCCCCCCCCEE------------------------------EEC
T ss_conf             4---20145555--------77776-----------55103688446------------------------------304


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             33223222333222221000001223344432100000057899999999999999999987899999999999999999
Q gi|254780531|r  322 STTLDSRKDLPKEIDSGYSMVTLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKLMRD  401 (452)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~id~a~~~v~~~ra~iGa~~nrle~~~~~~~~~~~  401 (452)
                      ..     ......................+.........+..++..|+.+++.+...|+++|++++|+|...+.++....
T Consensus       226 ~~-----An~~~~r~~~~~~~~~~~~~~~~ls~~~~~~~~~~a~~~l~~a~~~l~~~~a~lG~~q~rie~a~~r~~~~~~  300 (347)
T pfam07164       226 TS-----ANSDGFRKFALAAVMVMELMDPKLSSEAFDMVVTKALGLIGQAITGLTQEQSTLGLSQSRVSKATTSLKAQQK  300 (347)
T ss_pred             CC-----CCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             65-----7728899999999998732577878789999999999999999999999999863899889999998999999


Q ss_pred             HHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99973062220258999999999999999999999999720688987525
Q gi|254780531|r  402 AVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR  451 (452)
Q Consensus       402 ~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~  451 (452)
                      .++..+++|||+|++|++++|+.+|+++|++.++.++-.+     |||+.
T Consensus       301 ~l~~~~~~le~vD~aEa~trl~~~q~qLeasy~vtarl~~-----LSL~n  345 (347)
T pfam07164       301 ILNTHILDLEGVDPYEASTRVNTLQTQIETSYSLTSRLQK-----MSLIN  345 (347)
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
T ss_conf             9999987411658999999999999999999999999834-----23974


No 31 
>pfam00700 Flagellin_C Bacterial flagellin C-terminal helical region. Flagellins polymerize to form bacterial flagella. There is some similarity between this family and pfam00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate and this is shown to be correct as structurally this family forms an extended helix that interacts with pfam00700.
Probab=99.83  E-value=2.5e-20  Score=141.93  Aligned_cols=82  Identities=26%  Similarity=0.377  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999878999999999999999999997306222025899999999999999999999999972068
Q gi|254780531|r  365 VSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTA  444 (452)
Q Consensus       365 l~~id~a~~~v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~  444 (452)
                      |..||.|+++|...|+++||++|||+...+++....++++.++|+|+|+|||||+++|++.|+++||+.+|++||||   
T Consensus         1 i~~id~Ai~~v~~~ra~lGa~qnRl~~~~~~l~~~~~n~~~a~s~i~D~D~Aee~t~l~~~qil~qas~a~~aqanq---   77 (84)
T pfam00700         1 IDILDEAITQLTSQRSDLGAVQNRLESANTNLKNQSDNLKAAISRIEDVDPAEASTRVTKLQILLQASYALTAQANQ---   77 (84)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_conf             91889999999999998859999999999889999999999998866650999999999999999999999999867---


Q ss_pred             HHHHHHC
Q ss_conf             8987525
Q gi|254780531|r  445 RILSLFR  451 (452)
Q Consensus       445 ~vL~L~~  451 (452)
                        |+||.
T Consensus        78 --lslln   82 (84)
T pfam00700        78 --LSLLN   82 (84)
T ss_pred             --HHHHH
T ss_conf             --88886


No 32 
>PRK12688 flagellin; Reviewed
Probab=99.67  E-value=2.1e-15  Score=111.72  Aligned_cols=100  Identities=21%  Similarity=0.318  Sum_probs=94.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             97404579999999999999999999999985122368831389999999999999999999999899999999999999
Q gi|254780531|r    1 MTSILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAG   80 (452)
Q Consensus         1 m~~i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~   80 (452)
                      |.+|.-......-|.+|+..-.-|...|+|||||||||++-|+|..++.+..|.++.+.+.-..+-|..+...||.+...
T Consensus         1 MS~IvLS~avRQNLlSLQsTAdLLATTQsRLssGKKVNtALDNPTNFFTAagLdsRaSdInnLLDGI~NGVQilQAANTG   80 (888)
T PRK12688          1 MSGVVLSNAVRQNLSSLQATADLLATTQSRLSSGKKVNTALDNPTNFFTAASLDSRASDINNLLDGIGNGVQILQAANTG   80 (888)
T ss_pred             CCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHCCCHHHHHHHHCCC
T ss_conf             97344178887677777778999988777652366122123687531100123410456777775212255533454036


Q ss_pred             HHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999999998753037
Q gi|254780531|r   81 MSKAIDVMSTIKNKITAGVE  100 (452)
Q Consensus        81 l~~~~~~l~r~relavqa~n  100 (452)
                      +....++...+|.+|-||-.
T Consensus        81 ITsL~kLvDsaKSIAnQALq  100 (888)
T PRK12688         81 ITSLNKLVDSAKSIANQALQ  100 (888)
T ss_pred             CHHHHHHHHHHHHHHHHHHH
T ss_conf             06689999989999998765


No 33 
>PRK08471 flgK flagellar hook-associated protein FlgK; Validated
Probab=97.85  E-value=0.0019  Score=38.73  Aligned_cols=79  Identities=19%  Similarity=0.195  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999999998789999999999999999999973062220258999999999999999999999999720688987525
Q gi|254780531|r  373 KCATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR  451 (452)
Q Consensus       373 ~~v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~  451 (452)
                      +-.....+++|..-+..+...+..+.....++..+..+.-+++-||+++|-|.|=-+||+-.+++-|+..-+.+|++=|
T Consensus       534 ~~y~~lvs~vG~~~~~a~~~~~~~~~~~~~~~~~r~svSGVnlDEE~~nLik~QqaY~AsArvista~em~dtLL~i~~  612 (612)
T PRK08471        534 EYYRFLTGKIASDTEKNNRINDTNKSLLNSVKKEYQSISGVSTDEELTNLIKFQSSYGAAAKIITTVDQMLDTLLGIKQ  612 (612)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             9999999999999999999999999999999999985106039999999999999999999999999999999982449


No 34 
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated
Probab=97.59  E-value=0.0046  Score=36.30  Aligned_cols=78  Identities=13%  Similarity=0.165  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             999999998789999999999999999999973062220258999999999999999999999999720688987525
Q gi|254780531|r  374 CATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR  451 (452)
Q Consensus       374 ~v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~  451 (452)
                      -.....+.+|..-+..+...+........++..+..+.-+++.||+++|-+.|--+||+-.++.-++..-+.+|...|
T Consensus       405 ~~~~~v~~ig~~~~~a~~~~~~~~~~~~~l~~~r~svSGVnlDEE~~nLi~~Q~aY~AsArvitt~demldtLln~vR  482 (482)
T PRK07521        405 LAASSLSWLEQQRSSASSEASYQSALLSRAQEALSNATGVDTDDEMALLLDLEQSYAASAKVISTVDEMLDSLLRAVR  482 (482)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             999999999999999999999999999999999984138059999999999999999999999999999999998519


No 35 
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=97.59  E-value=0.0047  Score=36.29  Aligned_cols=77  Identities=9%  Similarity=0.114  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999987899999999999999999999730622202589999999999999999999999997206889875
Q gi|254780531|r  373 KCATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSL  449 (452)
Q Consensus       373 ~~v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L  449 (452)
                      +-.....+.+|...+..+...+..+.....++..+..+.-+++-||+++|-+.|=-+||+-.+++-+++.-+.+|.+
T Consensus       470 ~~~~~~vs~ig~~~~~a~~~~~~~~~~~~~l~~~r~svSGVnlDEE~~nLi~~Q~aY~AsArvist~demldtLlni  546 (547)
T PRK08147        470 DAYASLVSDVGNQTATLKTSSTTQANVVTQLTTQQQSVSGVNLDEEYGNLQRFQQYYLANAQVLQTASTLFDALLNI  546 (547)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999999999999999999999999999999999843176699999999999999999999999999999998775


No 36 
>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional
Probab=97.47  E-value=0.0067  Score=35.31  Aligned_cols=79  Identities=19%  Similarity=0.259  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999999998789999999999999999999973062220258999999999999999999999999720688987525
Q gi|254780531|r  373 KCATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR  451 (452)
Q Consensus       373 ~~v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~  451 (452)
                      +-.....++||+.-...+...+..+.....++.-+..+.-+++-||+++|-|.|=-+||+-.++.-|++.=+.+|..+|
T Consensus       546 ~~y~~lvs~vG~~a~~a~~~~~~~~~l~~~~~~~r~SvSGVnlDEE~anLikfQqaY~AaArvIttadem~dtLL~~vR  624 (624)
T PRK12714        546 GALSGLTTSVGSAARAANYSADAQKVINDQAQASRDSISGVNLDEEAADMLKLQQAYQAAAQMISTADTMFQAILGAVR  624 (624)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             9999999999999999999999999999999999870306168999999999999999999999999999999998519


No 37 
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=97.02  E-value=0.02  Score=32.39  Aligned_cols=76  Identities=20%  Similarity=0.202  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999987899999999999999999999730622202589999999999999999999999997206889875
Q gi|254780531|r  374 CATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSL  449 (452)
Q Consensus       374 ~v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L  449 (452)
                      -.....+.+|...++.+...+..+.....++..+..+.-+++-||+++|-+.|--+||+-.+++-+++.-+.+|.+
T Consensus       380 ~~~~lvs~ig~~~~~a~~~~~~~~~~~~~~~~~r~svsGVnlDEE~~nLi~~Q~aY~AsArvitt~demldtLln~  455 (456)
T PRK07191        380 AATALVGYIAITSNQNHSELENAENVRNQAERYWESFSGVNNDEEAMNLMEYQRAYQSNMKVIATGDKLFSDLLAL  455 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999999999999846581789999999999999999999999999999999953


No 38 
>PRK06945 flgK flagellar hook-associated protein FlgK; Validated
Probab=96.94  E-value=0.024  Score=31.92  Aligned_cols=79  Identities=11%  Similarity=0.187  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999878999999999999999999997306222025899999999999999999999999972068898752
Q gi|254780531|r  372 IKCATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLF  450 (452)
Q Consensus       372 ~~~v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~  450 (452)
                      .+-.....++||+.-...+...+..+.+...++.-+..+.-+.+-||+++|-|.|=.+||+-.++.-+++.-+-+|.+|
T Consensus       571 ~~~y~~~vs~iG~~a~~a~~~~~~q~~l~~~~~~~r~SvSGVnlDEEl~nLikyQqaY~AaArvItt~deMldtLl~i~  649 (649)
T PRK06945        571 TGAYAQLVNDIGNKASQLKVSSAAQTALLTQITTAQQSVSGVNLDEEAANLLQYQQLYQANAKVIQTASTLFDTLLGIF  649 (649)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9999999999999999999999999999999999997440613999999999999999999999999999999999539


No 39 
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=96.62  E-value=0.042  Score=30.43  Aligned_cols=77  Identities=9%  Similarity=0.098  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999998789999999999999999999973062220258999999999999999999999999720688987
Q gi|254780531|r  372 IKCATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILS  448 (452)
Q Consensus       372 ~~~v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~  448 (452)
                      .+-.....+++|..-+..+...+..+.+...++..+..+.-+++-||+++|-|.|--+||+-.+++-+++.=+.+|+
T Consensus       548 ~d~y~~lv~~vG~~~~~a~~~~~~~~~l~~~~~~~r~svSGVnlDEE~anLikfQqaY~AsArvIst~dem~dtLln  624 (628)
T PRK06665        548 DDFFANTASNIGIKGQIAEITKNSQNQILKELTDMRQSVSGVNKDEELANMIEFQQSYNASAKFINVSNELLDTIIN  624 (628)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999987636029999999999999999999999999999999987


No 40 
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK; InterPro: IPR002371 Within the bacterial flagellum, the basal-body rod, the hook, the hook- associated proteins (HAPs), and the helical filament together constitute an axial substructure whose elements share structural features and a common export pathway .   The amino acid sequences of the hook protein and of the three hook-associated proteins of Salmonella typhimurium have been deduced from the DNA sequences of their structural genes (flgE, flgK, flgL and fliD respectively). These sequences have been compared with each other and with those for the filament protein (flagellin) and four rod proteins. The hook protein was found to be most similar to the distal rod protein (FlgG) and the proximal hook-associated protein (HAP1), which are thought to be attached to the proximal and distal ends of the hook, the similarities being most pronounced near the N- and C-termini. It is thought that the axial proteins may adopt amphipathic alpha-helical conformations at their N- and C-termini. These regions of the filament and hook are believed to be responsible for quaternary interactions between subunits. Interaction between N- and C-terminal alpha-helices may be important in the formation of the axial structures of the flagellum. Although consensus sequences have been noted, no consensus extends to the entire set of axial proteins. Thus the basis for recognition of a protein for export by the flagellum-specific pathway remains to be identified.; GO: 0005198 structural molecule activity, 0009296 flagellum biogenesis, 0009424 flagellin-based flagellum hook.
Probab=96.50  E-value=0.05  Score=29.98  Aligned_cols=80  Identities=15%  Similarity=0.184  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999987899999999999999999999730622202589999999999999999999999997206889875
Q gi|254780531|r  370 TQIKCATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSL  449 (452)
Q Consensus       370 ~a~~~v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L  449 (452)
                      ...+......++||...++.+...+..+.+...++..++.+.-+-+-||+++|-+.|=-++|+..+++-+++.=+.||.+
T Consensus       416 ~~~~~y~~~~s~~g~~~~~a~~~~~~~~~~l~~~~~~~~s~sGVs~DEE~~~l~~~Q~~Y~A~ak~i~t~d~m~d~LL~~  495 (495)
T TIGR02492       416 SLDDFYASLVSQIGSDASQAESALEAQEALLNQLQEARSSISGVSLDEEMANLIQYQKAYQASAKVISTVDEMLDSLLNL  495 (495)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             38999988778999999998888888999999999988764166799999999999988999999999999999999639


No 41 
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=96.42  E-value=0.057  Score=29.66  Aligned_cols=74  Identities=14%  Similarity=0.224  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999878999999999999999999997306222025899999999999999999999999972068898
Q gi|254780531|r  374 CATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARIL  447 (452)
Q Consensus       374 ~v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL  447 (452)
                      -.....+.+|......+...+..+.....++..+..+.-+|+.||+++|-+.|--+||+-.+++-+++.=+.+|
T Consensus       419 ~~~~~v~~vg~~~~~a~~~~~~~~~~~~~~~~~~~s~SGVnlDEE~~nLi~~Q~aYqAnAkvItt~demldtLl  492 (500)
T PRK07739        419 FYQSLIGKLGVDAQEANRMAENSEVLVDQVDNRRQSVSAVSLDEEMTNMIQFQHAYNAAARMITAIDEMLDKII  492 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999998712966999999999999999999999999999999999


No 42 
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=95.75  E-value=0.12  Score=27.69  Aligned_cols=81  Identities=14%  Similarity=0.167  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999878999999999999999999997306222025899999999999999999999999972068898752
Q gi|254780531|r  371 QIKCATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLF  450 (452)
Q Consensus       371 a~~~v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~  450 (452)
                      ..+-.....+.||-..+..+...+..+.+...++..+..+.-+++-||+++|.+.|=-++|+..++..+++.=.-+|.++
T Consensus       472 ~~d~y~~l~~~i~~~~~~a~~~~~~~~~~l~~~~~~~~S~SGVnlDEE~anLi~~Qq~Y~AsAKvI~tvd~m~dtLln~~  551 (552)
T COG1256         472 FSDYYAGLVGWIGIKASTASSESDAKEALLNQLTSERQSISGVNLDEEMANLIQFQQAYQASAKVIQTVDEMLDTLLNIV  551 (552)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999988899999888741121479999999999986013778779999999999999999999999999999998642


Q ss_pred             C
Q ss_conf             5
Q gi|254780531|r  451 R  451 (452)
Q Consensus       451 ~  451 (452)
                      +
T Consensus       552 ~  552 (552)
T COG1256         552 G  552 (552)
T ss_pred             C
T ss_conf             9


No 43 
>PRK06799 flgK flagellar hook-associated protein FlgK; Validated
Probab=94.92  E-value=0.22  Score=26.04  Aligned_cols=75  Identities=15%  Similarity=0.146  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999878999999999999999999997306222025899999999999999999999999972068898752
Q gi|254780531|r  376 TAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLF  450 (452)
Q Consensus       376 ~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~  450 (452)
                      ....+.+|...++.....+........++..+..+.-+|+-||+++|-+.|--+||+..+++-+++.=+.+|.+.
T Consensus       357 ~~~v~~~~~~~~~a~~~~~~~~~~~~~~~~~r~svsGVnlDEE~~nLl~~QqaY~A~AkvIst~demldtLLniv  431 (431)
T PRK06799        357 DQFIVGVASDKSAVNAYQKIHTDLLEGIQQEKMSLEGVNMEEEMVNLMAFQKYFVANSKAITTMNEVFDSLFSII  431 (431)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             999999999999999999999999999999998253838889999999999999999999999999999998439


No 44 
>PRK12715 flgK flagellar hook-associated protein FlgK; Provisional
Probab=93.50  E-value=0.44  Score=24.22  Aligned_cols=80  Identities=11%  Similarity=0.138  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999999998789999999999999999999973062220258999999999999999999999999720688987525
Q gi|254780531|r  372 IKCATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR  451 (452)
Q Consensus       372 ~~~v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~  451 (452)
                      .+......++||..-+..+...+..+.+...+++.+-.+.-+.+-||+++|-|.|=-+||+-.+++-|++.=+-+|.++|
T Consensus       570 ~d~Y~~lvs~vG~~t~~A~~~~~~~~~l~~q~~~~r~SvSGVNLDEE~aNLi~fQqaY~AsArvIsta~emfDtLLn~vR  649 (649)
T PRK12715        570 FDRYGSLLAEVGGRTNQAKTSFESADILHKQALDFQDSKSGVNLDEEGANLLVFQQAYQAAGKLMEISNQIMNLLFDIMR  649 (649)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999999999999999999899999999999999860315168899999999999999999999999999999998539


No 45 
>PRK08871 flgK flagellar hook-associated protein FlgK; Validated
Probab=92.80  E-value=0.56  Score=23.58  Aligned_cols=77  Identities=13%  Similarity=0.217  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999987899999999999999999999730622202589999999999999999999999997206889875
Q gi|254780531|r  373 KCATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSL  449 (452)
Q Consensus       373 ~~v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L  449 (452)
                      +-.....+++|+.-...+...+..+.....++.-+..+.-+++-||+++|-|.|=.+||+-.++.-+++.-+.+|.+
T Consensus       549 d~y~~lvs~iG~~~~~a~~~~~~~~~~~~~~~~~~~svSGVnlDEEl~nLikyQqaY~AaArvItt~demldtLlni  625 (626)
T PRK08871        549 DLYHNLNTEVGLKKATATRLAEVARLEKEAAQSRVASISGVNLDEEAANMMKFQQAYMASSRIMQAANDTFNTILQL  625 (626)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999999999999999999999999999999998601150399999999999999999999999999999998775


No 46 
>PRK12632 flgC flagellar basal body rod protein FlgC; Provisional
Probab=92.79  E-value=0.32  Score=25.04  Aligned_cols=43  Identities=14%  Similarity=0.207  Sum_probs=39.6

Q ss_pred             CEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             2220258999999999999999999999999720688987525
Q gi|254780531|r  409 RLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR  451 (452)
Q Consensus       409 ~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~  451 (452)
                      ..-++|+++||++|-..+-.+||-+.++..+.+.-+..|.|+|
T Consensus        87 ~~pnVd~~~EMvdm~~AsRsYeANv~v~~t~k~M~~~~L~i~r  129 (130)
T PRK12632         87 DGSNVDLVIEIADAREAQRSYEANLRMFDQARQMSSSLLDLLR  129 (130)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             6899788999999999999999999999999999999999842


No 47 
>PRK12782 flgC flagellar basal body rod protein FlgC; Reviewed
Probab=91.98  E-value=0.47  Score=24.06  Aligned_cols=47  Identities=15%  Similarity=0.242  Sum_probs=42.1

Q ss_pred             HHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             73062220258999999999999999999999999720688987525
Q gi|254780531|r  405 KGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR  451 (452)
Q Consensus       405 ~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~  451 (452)
                      .+.-..-++|+++||++|-..+-.+||-+.++..+.+..+..|.|+|
T Consensus        91 ~GyV~~pnVn~~~EMvdm~~AsRsYeANv~v~~tak~m~~~tL~i~r  137 (138)
T PRK12782         91 NGYVKLPNVNMLIEMADMREANRSYEANLQVIKQARAMVSMTIDLLR  137 (138)
T ss_pred             CCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             78854689888999999999999999999999999999999999850


No 48 
>PRK05681 flgC flagellar basal body rod protein FlgC; Reviewed
Probab=91.81  E-value=0.53  Score=23.71  Aligned_cols=47  Identities=11%  Similarity=0.185  Sum_probs=41.3

Q ss_pred             HHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             30622202589999999999999999999999997206889875259
Q gi|254780531|r  406 GVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFRG  452 (452)
Q Consensus       406 ~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~~  452 (452)
                      +.-..-++|+++||++|-..+-.+||-+.++..+.+.-+..|.|+|+
T Consensus        93 GyV~~pNVd~~~Emvdm~~A~R~YeAN~~~~~~~k~m~~~~L~igk~  139 (139)
T PRK05681         93 GYVKYPNVNVVVEMVDMISASRSYEANVEVLNAAKSMMQKTLTIGQS  139 (139)
T ss_pred             CEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             71542898889999999999999999999999999999999987439


No 49 
>PRK12631 flgC flagellar basal body rod protein FlgC; Provisional
Probab=88.68  E-value=1.3  Score=21.32  Aligned_cols=46  Identities=13%  Similarity=0.129  Sum_probs=38.4

Q ss_pred             HHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             3062220258999999999999999999999999720688987525
Q gi|254780531|r  406 GVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR  451 (452)
Q Consensus       406 ~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~  451 (452)
                      +.-..-++|+.+||++|-..+-.+||-+.++..+.+.-+.-|.|.|
T Consensus        93 GyV~~pNVd~~~EMvdm~~A~RsYeANv~~~~~ak~m~~~aL~Igk  138 (138)
T PRK12631         93 GFIYKPNVNVMEEMADMISASRSYQMNVQVAEAAKSMLQQTLRMGK  138 (138)
T ss_pred             CCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             8884489888999999999999999999999999999999997459


No 50 
>PRK12629 flgC flagellar basal body rod protein FlgC; Provisional
Probab=88.62  E-value=1.3  Score=21.25  Aligned_cols=47  Identities=19%  Similarity=0.157  Sum_probs=39.4

Q ss_pred             HHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             73062220258999999999999999999999999720688987525
Q gi|254780531|r  405 KGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR  451 (452)
Q Consensus       405 ~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~  451 (452)
                      .+.-..-++|+.+||++|-..+=.+||-++++..+.+.-+..|.|.|
T Consensus        89 ~GyV~~pnVn~~~EMvdm~~AsRsYEANv~~~~~aK~m~~~aL~igr  135 (135)
T PRK12629         89 DGYVFSPDVDPVSQMVNMISASRNYQAGVEMLNTAKELALATLTMGR  135 (135)
T ss_pred             CCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             98884689888999999999999999999999999999999998559


No 51 
>PRK12624 flgB flagellar basal body rod protein FlgB; Provisional
Probab=88.40  E-value=1.2  Score=21.62  Aligned_cols=37  Identities=19%  Similarity=0.209  Sum_probs=30.4

Q ss_pred             ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             0258999999999999999999999999720688987
Q gi|254780531|r  412 DADMASESTRLSALQTQQQLAVQALSIVNNSTARILS  448 (452)
Q Consensus       412 D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~  448 (452)
                      .+|+-.|+++|++.|+.+|+.++.|+.=-..-..|++
T Consensus       105 nVDid~Em~~la~N~l~Y~al~~~l~~~~~~lr~vIk  141 (143)
T PRK12624        105 NVDVEKEVVEASNSQMQYMLMIERLNQNYRLLKQVMR  141 (143)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             2689999999999999999999999978999999973


No 52 
>PRK12622 flgB flagellar basal body rod protein FlgB; Provisional
Probab=88.32  E-value=1.1  Score=21.70  Aligned_cols=37  Identities=19%  Similarity=0.104  Sum_probs=30.8

Q ss_pred             EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2025899999999999999999999999972068898
Q gi|254780531|r  411 VDADMASESTRLSALQTQQQLAVQALSIVNNSTARIL  447 (452)
Q Consensus       411 ~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL  447 (452)
                      -.+|+-+|+++|++.|+.+|+.+++++.-...-+.|+
T Consensus        98 NnVDid~Em~~la~N~l~Y~al~~~l~~~f~~l~~vI  134 (135)
T PRK12622         98 NNVDIDSEMKALVQNQMMYHLFTNIQAHHFKSVNIVI  134 (135)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8758899999999999999999999998999999985


No 53 
>PRK06797 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=88.01  E-value=0.72  Score=22.91  Aligned_cols=26  Identities=15%  Similarity=0.254  Sum_probs=23.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             25899999999999999999999999
Q gi|254780531|r  413 ADMASESTRLSALQTQQQLAVQALSI  438 (452)
Q Consensus       413 ~D~A~e~t~l~~~q~~~Qaa~~~laq  438 (452)
                      +|+-.|+++|.+.++.+||+++.|.-
T Consensus        99 VD~d~Em~~~a~N~l~Yqas~~~Ln~  124 (135)
T PRK06797         99 VDVTTEMLDLMKANQLYGISINAINT  124 (135)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             57899999999999999999999825


No 54 
>PRK12630 flgC flagellar basal body rod protein FlgC; Provisional
Probab=87.49  E-value=1.6  Score=20.74  Aligned_cols=46  Identities=13%  Similarity=0.175  Sum_probs=38.2

Q ss_pred             HHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             3062220258999999999999999999999999720688987525
Q gi|254780531|r  406 GVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR  451 (452)
Q Consensus       406 ~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~  451 (452)
                      +.-..-++|+.+||++|-..+-.+||-+.++..+.+.-+.-|.|.|
T Consensus        98 GyV~~PnVd~~~EMvdm~~AsRsYEANv~v~~~aK~m~~~tL~igk  143 (143)
T PRK12630         98 GYVSMPNVNVLNEMADMMASTRSYEANVTAMNAEKSMFSKALEIGK  143 (143)
T ss_pred             CCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             8884689888999999999999999999999999999999998559


No 55 
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=86.87  E-value=1.8  Score=20.53  Aligned_cols=76  Identities=11%  Similarity=0.186  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999998789999999999999999999973062220258999999999999999999999999720688987
Q gi|254780531|r  373 KCATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILS  448 (452)
Q Consensus       373 ~~v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~  448 (452)
                      +-.....++||..-.+.+...+..+.+...++.-+..+.-+++-||+++|-|.|--+||+-.++.-+++.=+-+|.
T Consensus       599 d~y~~lvs~vG~~a~~A~~~~~~q~~l~~~~~~~r~SvSGVnlDEE~anLikfQqaY~AaArvItt~deMlDtLln  674 (676)
T PRK05683        599 DAYGKLVERVGTLASQARADADATAAVLKQAQDSRDSLSGVSLDEEAANLIKFQQYYTASSQIIKAAQETFDTLIN  674 (676)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999999999999985625039999999999999999999999999999999973


No 56 
>PRK12621 flgB flagellar basal body rod protein FlgB; Provisional
Probab=85.71  E-value=2  Score=20.16  Aligned_cols=35  Identities=9%  Similarity=0.100  Sum_probs=27.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             25899999999999999999999999972068898
Q gi|254780531|r  413 ADMASESTRLSALQTQQQLAVQALSIVNNSTARIL  447 (452)
Q Consensus       413 ~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL  447 (452)
                      +|+-+|+++|.+.++.+|+.++.|+---..-..|+
T Consensus        97 Vdid~Em~~la~N~l~Y~a~~~~l~~~~~~l~~aI  131 (136)
T PRK12621         97 VNLDKEMAKMAKNSLQYNALTTVIKGNFEGVKNII  131 (136)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             65489999999999999999999999999999999


No 57 
>PRK05680 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=84.94  E-value=2.2  Score=19.94  Aligned_cols=35  Identities=20%  Similarity=0.118  Sum_probs=27.3

Q ss_pred             ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             02589999999999999999999999997206889
Q gi|254780531|r  412 DADMASESTRLSALQTQQQLAVQALSIVNNSTARI  446 (452)
Q Consensus       412 D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~v  446 (452)
                      .+|+-+|+++|.+.++.+|+.++.|+.--..-..|
T Consensus        98 ~Vdle~Em~~~a~N~l~Y~a~~~~l~~~~~~l~~a  132 (137)
T PRK05680         98 TVDMDVERTEFAKNSLMYQALLTALNGKFKGLMSV  132 (137)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             60879999999999999999999999999999999


No 58 
>pfam06429 DUF1078 Domain of unknown function (DUF1078). This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.
Probab=84.10  E-value=2.4  Score=19.71  Aligned_cols=38  Identities=16%  Similarity=0.274  Sum_probs=33.7

Q ss_pred             ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             02589999999999999999999999997206889875
Q gi|254780531|r  412 DADMASESTRLSALQTQQQLAVQALSIVNNSTARILSL  449 (452)
Q Consensus       412 D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L  449 (452)
                      .+|+.+|+++|-..|-.+||...++..++..-+.+|.+
T Consensus         2 nV~~~~Em~~mi~~qr~yqa~~k~i~~~~em~~~~~~~   39 (39)
T pfam06429         2 NVDLVEEMVNLIEAQRAYEANAKVIQTADEMLGTLLNL   39 (39)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             88789999999999999899999998899999998763


No 59 
>PRK12619 flgB flagellar basal body rod protein FlgB; Provisional
Probab=83.23  E-value=2.6  Score=19.49  Aligned_cols=30  Identities=20%  Similarity=0.090  Sum_probs=25.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             258999999999999999999999999720
Q gi|254780531|r  413 ADMASESTRLSALQTQQQLAVQALSIVNNS  442 (452)
Q Consensus       413 ~D~A~e~t~l~~~q~~~Qaa~~~laqan~~  442 (452)
                      +|+-.|+++|.+.++.+||.++.|+---..
T Consensus        93 VDid~Ema~~a~N~l~Yqa~~~~l~~k~~~  122 (130)
T PRK12619         93 VDKDMETTEFARNALNYQASLSFLNGKIKS  122 (130)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             257999999999999999999999999999


No 60 
>PRK12623 flgB flagellar basal body rod protein FlgB; Provisional
Probab=83.21  E-value=2.6  Score=19.49  Aligned_cols=35  Identities=17%  Similarity=0.108  Sum_probs=27.2

Q ss_pred             ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             02589999999999999999999999997206889
Q gi|254780531|r  412 DADMASESTRLSALQTQQQLAVQALSIVNNSTARI  446 (452)
Q Consensus       412 D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~v  446 (452)
                      .+|+-+|+++|.+.++.+|+.++.|+.--..-+.|
T Consensus        95 nVDid~Em~~laeN~l~Y~a~~~~l~~k~~~lk~a  129 (131)
T PRK12623         95 NVDIDNEMVNQAANTLMYNALITQLNNRLATTRYI  129 (131)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             67799999999999999999999999899999986


No 61 
>PRK12625 flgB flagellar basal body rod protein FlgB; Provisional
Probab=83.02  E-value=2.7  Score=19.44  Aligned_cols=31  Identities=13%  Similarity=0.127  Sum_probs=25.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2589999999999999999999999997206
Q gi|254780531|r  413 ADMASESTRLSALQTQQQLAVQALSIVNNST  443 (452)
Q Consensus       413 ~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~  443 (452)
                      +|+-+|+++|.+.++.+|+.++.|.---..-
T Consensus        95 Vdid~Em~~~aeN~l~Y~a~~~~l~~k~~~l  125 (132)
T PRK12625         95 VDIQQEQSAFMQNALEYQMSLGFLDSKFSGM  125 (132)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             1479999999999999999999999999999


No 62 
>PRK12692 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=82.71  E-value=2.7  Score=19.36  Aligned_cols=40  Identities=15%  Similarity=0.197  Sum_probs=37.4

Q ss_pred             ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             0258999999999999999999999999720688987525
Q gi|254780531|r  412 DADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR  451 (452)
Q Consensus       412 D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~  451 (452)
                      .+|+.+||++|-..|=.+|+.+.++.-+.+.-+.+-+|+|
T Consensus       223 NVd~~~EMv~mI~~qRafe~n~k~i~~~Dem~~~~~~liR  262 (262)
T PRK12692        223 NVDPVKEITELISAQRAFEMNSKVIQAADEMAGTVSKGIR  262 (262)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             5659999999999999999999999999999999997639


No 63 
>PRK12685 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=79.26  E-value=3.6  Score=18.64  Aligned_cols=37  Identities=14%  Similarity=0.153  Sum_probs=28.5

Q ss_pred             EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2025899999999999999999999999972068898
Q gi|254780531|r  411 VDADMASESTRLSALQTQQQLAVQALSIVNNSTARIL  447 (452)
Q Consensus       411 ~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL  447 (452)
                      -.+|+-+|+++|.+.++.+|+.++.+..--..-..++
T Consensus        77 N~Vdld~Em~~~aeN~l~Y~a~~~~l~~~~~~lk~AI  113 (116)
T PRK12685         77 NTVELGKEQARYSQNAMDYQTSLTFLNMKISGLKSAI  113 (116)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8537899999999999999999999999999999986


No 64 
>PRK12691 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=79.01  E-value=3.7  Score=18.59  Aligned_cols=40  Identities=18%  Similarity=0.212  Sum_probs=36.1

Q ss_pred             ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             0258999999999999999999999999720688987525
Q gi|254780531|r  412 DADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR  451 (452)
Q Consensus       412 D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~  451 (452)
                      .+|+++||++|-..|=.+|+.+.|+.-+.+.-+...+|+|
T Consensus       223 NVd~~~Em~~mI~~qRaye~n~k~i~t~De~~~~a~nllR  262 (262)
T PRK12691        223 NVDVVKEITDLITAQRAYEMNSKVISAADEMLQTTSKNLR  262 (262)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             4659999999999999999999999999999999998668


No 65 
>PRK07182 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=78.81  E-value=3.7  Score=18.55  Aligned_cols=37  Identities=14%  Similarity=0.169  Sum_probs=27.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             2589999999999999999999999997206889875259
Q gi|254780531|r  413 ADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFRG  452 (452)
Q Consensus       413 ~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~~  452 (452)
                      +|+-.|+++|.+.++.+||.++.|.--   -..+.+=+||
T Consensus       111 Vdld~E~a~fa~Nal~Yqasl~fl~~k---i~~l~~AI~G  147 (148)
T PRK07182        111 VALNVEQAEFSKNALDYQTSLSFLNMK---LTGLKQAIEG  147 (148)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHCC
T ss_conf             035999999999999999999999999---9999998748


No 66 
>PRK06004 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=77.48  E-value=3.7  Score=18.53  Aligned_cols=29  Identities=14%  Similarity=0.069  Sum_probs=24.3

Q ss_pred             EECCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             20258999999999999999999999999
Q gi|254780531|r  411 VDADMASESTRLSALQTQQQLAVQALSIV  439 (452)
Q Consensus       411 ~D~D~A~e~t~l~~~q~~~Qaa~~~laqa  439 (452)
                      -.+|+-+|+.+|.+.++.+|++++.|.--
T Consensus        87 N~Vdle~Em~~~aen~~~Y~~~~~~~~~~  115 (126)
T PRK06004         87 NAVNLEDEMLKVSDNQMDYAAATSLYQKS  115 (126)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             81469999999999999999999999999


No 67 
>COG1815 FlgB Flagellar basal body protein [Cell motility and secretion]
Probab=77.03  E-value=4.2  Score=18.23  Aligned_cols=37  Identities=22%  Similarity=0.256  Sum_probs=27.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             2589999999999999999999999997206889875259
Q gi|254780531|r  413 ADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFRG  452 (452)
Q Consensus       413 ~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~~  452 (452)
                      +|+..|+++|.+.++.+|+.++.+.   ..-.++.+-+||
T Consensus        96 Vdld~E~~~~~kN~~~Yq~~~~~l~---~~~~~~~~vl~g  132 (133)
T COG1815          96 VDLDREMTEFAKNQLMYQALLSFLK---SQIKMLNSVLKG  132 (133)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHCC
T ss_conf             4389999999999999999999999---999999999717


No 68 
>PRK06802 flgC flagellar basal body rod protein FlgC; Reviewed
Probab=75.88  E-value=4.5  Score=18.04  Aligned_cols=47  Identities=19%  Similarity=0.206  Sum_probs=35.8

Q ss_pred             HHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             73062220258999999999999999999999999720688987525
Q gi|254780531|r  405 KGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR  451 (452)
Q Consensus       405 ~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~  451 (452)
                      .+.-..-++|+.+||++|-..+=.+||-++++..+.+.-+.-|.|=|
T Consensus        94 ~GyV~~PnVn~~~EMvdm~~AsRsYeANv~~~~~aK~m~~~aL~IGk  140 (141)
T PRK06802         94 QGYVFYPDVNVVSEMADMMSASRSFETNVEVLNSVKSMQQSLLKLGE  140 (141)
T ss_pred             CCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             98884689898999999999999999999999999999999998637


No 69 
>PRK12620 flgB flagellar basal body rod protein FlgB; Provisional
Probab=75.58  E-value=4.6  Score=17.99  Aligned_cols=34  Identities=12%  Similarity=0.032  Sum_probs=26.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2589999999999999999999999997206889
Q gi|254780531|r  413 ADMASESTRLSALQTQQQLAVQALSIVNNSTARI  446 (452)
Q Consensus       413 ~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~v  446 (452)
                      +|+-+|+++|.+.++.+|+.++.|.---..-..+
T Consensus        95 Vd~d~Em~~~aeN~l~Y~a~~~~l~~ki~~l~~A  128 (132)
T PRK12620         95 VDPDAERAAYGRAALEYRASLSFLESKVRSMLTA  128 (132)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             0669999999999999999999999999999998


No 70 
>PRK12626 flgB flagellar basal body rod protein FlgB; Provisional
Probab=75.07  E-value=4.7  Score=17.91  Aligned_cols=25  Identities=8%  Similarity=0.247  Sum_probs=21.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2589999999999999999999999
Q gi|254780531|r  413 ADMASESTRLSALQTQQQLAVQALS  437 (452)
Q Consensus       413 ~D~A~e~t~l~~~q~~~Qaa~~~la  437 (452)
                      +|+-.|+++|.+.++.+||+++.|.
T Consensus       124 VDld~E~a~faeN~l~YqAsl~fl~  148 (162)
T PRK12626        124 VDLDTERVQFADNALHYETGMTVMT  148 (162)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             0469999999999999999999999


No 71 
>PRK12628 flgC flagellar basal body rod protein FlgC; Provisional
Probab=72.51  E-value=5.5  Score=17.53  Aligned_cols=42  Identities=14%  Similarity=0.183  Sum_probs=30.0

Q ss_pred             CCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             622202589999999999999999999999997206889875
Q gi|254780531|r  408 GRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSL  449 (452)
Q Consensus       408 s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L  449 (452)
                      -..-++|+.+||++|-..+-.+||-+.++..+.+.-+..|.|
T Consensus        97 V~~pnVn~~~EMvdm~~AsRsYEANv~v~~~aK~M~~~aL~I  138 (140)
T PRK12628         97 VYTSNINYVEEMANIISASRSYQMNIELLNTTKQLMQRTLQL  138 (140)
T ss_pred             EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             734898889999999999999999999999999999999861


No 72 
>PRK12636 flgG flagellar basal body rod protein FlgG; Provisional
Probab=67.38  E-value=7  Score=16.85  Aligned_cols=40  Identities=18%  Similarity=0.246  Sum_probs=34.7

Q ss_pred             ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             0258999999999999999999999999720688987525
Q gi|254780531|r  412 DADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR  451 (452)
Q Consensus       412 D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~  451 (452)
                      .+|+++||++|-..|=.+|+.+.++.-+.+.-+.+..|.|
T Consensus       224 NVn~~~Emv~mI~~qRaye~n~K~i~~~De~~~~~~nl~R  263 (263)
T PRK12636        224 NVDLSEEFTEMIVAQRGFQANTRIITTSDEILQELVNLKR  263 (263)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             4759999999999999999998899999999999997459


No 73 
>PRK12627 flgB flagellar basal body rod protein FlgB; Provisional
Probab=59.63  E-value=9.8  Score=15.98  Aligned_cols=30  Identities=13%  Similarity=0.120  Sum_probs=21.4

Q ss_pred             ECCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             025899999999999999999999999972
Q gi|254780531|r  412 DADMASESTRLSALQTQQQLAVQALSIVNN  441 (452)
Q Consensus       412 D~D~A~e~t~l~~~q~~~Qaa~~~laqan~  441 (452)
                      .+|+.+|+.++...++.+|++++.|..-..
T Consensus        90 ~V~le~Em~~~aen~~~Y~~~~~~~~~~~~  119 (128)
T PRK12627         90 SVSLEEEMLRSAEAKRQHDRALAIYKSSMS  119 (128)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             355999999999999999999999999999


No 74 
>TIGR01395 FlgC flagellar basal-body rod protein FlgC; InterPro: IPR006299   These sequences represent FlgC, one of several components of bacterial flagella. FlgC is part of the basal body. ; GO: 0019861 flagellum.
Probab=59.41  E-value=9.9  Score=15.95  Aligned_cols=41  Identities=15%  Similarity=0.181  Sum_probs=35.0

Q ss_pred             EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             20258999999999999999999999999720688987525
Q gi|254780531|r  411 VDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR  451 (452)
Q Consensus       411 ~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~  451 (452)
                      =-+|.-+||.+|-..+=-+||=++++..+-+....-|.|+|
T Consensus       107 PNVn~~~EMVdmi~A~RsYeANv~v~~~~K~m~~~tL~~~~  147 (147)
T TIGR01395       107 PNVNVVEEMVDMIEASRSYEANVQVFNTAKSMLLRTLEIGR  147 (147)
T ss_pred             CCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             85585432321120024788999999999999999999709


No 75 
>PRK12693 flgG flagellar basal body rod protein FlgG; Provisional
Probab=58.75  E-value=10  Score=15.88  Aligned_cols=39  Identities=13%  Similarity=0.191  Sum_probs=33.0

Q ss_pred             ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             025899999999999999999999999972068898752
Q gi|254780531|r  412 DADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLF  450 (452)
Q Consensus       412 D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~  450 (452)
                      .+|+.+||++|-..|=.+|+.+.|+.-+.+.-+.+..||
T Consensus       223 NVd~~~Em~~mI~~qR~ye~n~K~i~t~De~l~~~~nll  261 (261)
T PRK12693        223 NVNVVEELVNMITGQRAYEMNSKAISTADQMLQYVNQLL  261 (261)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             466999999999999999999789999999999998629


No 76 
>PRK05682 flgE flagellar hook protein FlgE; Validated
Probab=57.41  E-value=8.5  Score=16.34  Aligned_cols=38  Identities=13%  Similarity=0.241  Sum_probs=29.5

Q ss_pred             ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             02589999999999999999999999997206889875
Q gi|254780531|r  412 DADMASESTRLSALQTQQQLAVQALSIVNNSTARILSL  449 (452)
Q Consensus       412 D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L  449 (452)
                      -+|+++|+++|=..|=-+||...+..-+.+.-|-++.|
T Consensus       376 NVDla~E~t~mI~~QRaYqANskvItTsDemLq~linl  413 (414)
T PRK05682        376 NVDLTTELVDMIVAQRNYQANAKTIKTQDQLLQTLVNL  413 (414)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHC
T ss_conf             17799999999999877467403456199999999725


No 77 
>PRK12641 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=54.35  E-value=12  Score=15.44  Aligned_cols=40  Identities=10%  Similarity=0.225  Sum_probs=33.5

Q ss_pred             ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             0258999999999999999999999999720688987525
Q gi|254780531|r  412 DADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR  451 (452)
Q Consensus       412 D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~  451 (452)
                      -+|..+||++|-..|=.+|+.+.++.-+-+.-+.+=+|||
T Consensus       210 NVd~~~EM~~lI~~qRaye~n~K~i~~~Dem~~~an~L~~  249 (252)
T PRK12641        210 NVNLEKNMIEMISNARQFEMQMKIISMCDQNTEYANQLLN  249 (252)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             4669999999999999999999999999999999998755


No 78 
>PRK12640 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=53.37  E-value=12  Score=15.34  Aligned_cols=40  Identities=18%  Similarity=0.304  Sum_probs=34.6

Q ss_pred             ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             0258999999999999999999999999720688987525
Q gi|254780531|r  412 DADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR  451 (452)
Q Consensus       412 D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~  451 (452)
                      -+|+++||++|-..|=.+|+.+.++.-+.+.-+.+-+|.|
T Consensus       205 NV~~~~Em~~mI~~qRaye~n~k~i~~~Dem~~~an~l~R  244 (246)
T PRK12640        205 NVNAVEEMVSMIALARQFEMQVKMMKTADDNAQAANQLLR  244 (246)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             5679999999999999999999999989999999998742


No 79 
>PRK12694 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=51.74  E-value=13  Score=15.18  Aligned_cols=38  Identities=11%  Similarity=0.233  Sum_probs=28.7

Q ss_pred             ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             02589999999999999999999999997206889875
Q gi|254780531|r  412 DADMASESTRLSALQTQQQLAVQALSIVNNSTARILSL  449 (452)
Q Consensus       412 D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L  449 (452)
                      .+|+.+||++|-..|=.+|+.+.|+.-+.+.-+.+++|
T Consensus       223 NVd~~~Emv~mI~~qRaye~~~k~i~t~De~l~~~~ql  260 (260)
T PRK12694        223 NVNVVEELVNMIQTQRAYEINSKAVTTSDQMLQRLTQM  260 (260)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             46399999999999999999988999999999998668


No 80 
>COG1558 FlgC Flagellar basal body rod protein [Cell motility and secretion]
Probab=51.32  E-value=13  Score=15.14  Aligned_cols=47  Identities=15%  Similarity=0.220  Sum_probs=32.9

Q ss_pred             HHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             73062220258999999999999999999999999720688987525
Q gi|254780531|r  405 KGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR  451 (452)
Q Consensus       405 ~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~  451 (452)
                      +++=+.-.+|+-.||++|-..+=-+||=++++.++-+..+..|.|+|
T Consensus        91 ~GYV~~PNVn~v~EM~dmisAsRsYeANv~v~~~~K~m~~~tL~i~~  137 (137)
T COG1558          91 KGYVKMPNVNVVIEMVDMISASRSYEANVEVLNTAKSMMQKTLELGQ  137 (137)
T ss_pred             CCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             67556587658999999999999899999999999999999997519


No 81 
>PRK06003 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=43.48  E-value=18  Score=14.39  Aligned_cols=37  Identities=11%  Similarity=0.186  Sum_probs=26.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             2589999999999999999999999997206889875259
Q gi|254780531|r  413 ADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFRG  452 (452)
Q Consensus       413 ~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~~  452 (452)
                      +|+-+|+.++.+.+..+|++++.+..   .-.++++=+||
T Consensus        90 V~le~Em~~~aen~~~Y~~~~~l~~~---~~~ml~~Ai~G  126 (126)
T PRK06003         90 VSLEQEMMKAGEINRDYSLNTAIVKS---FHRMMLMTVKG  126 (126)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHCC
T ss_conf             57999999999999999999999999---99999998649


No 82 
>TIGR01146 ATPsyn_F1gamma ATP synthase F1, gamma subunit; InterPro: IPR000131   ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , .  F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP.   F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis . These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient.   The ATPase F1 complex gamma subunit forms the central shaft that connects the F0 rotary motor to the F1 catalytic core. The gamma subunit functions as a rotary motor inside the cylinder formed by the alpha(3)beta(3) subunits in the F1 complex . The best-conserved region of the gamma subunit is its C-terminus, which seems to be essential for assembly and catalysis.   More information about this protein can be found at Protein of the Month: ATP Synthases .; GO: 0046933 hydrogen ion transporting ATP synthase activity rotational mechanism, 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0016020 membrane, 0016469 proton-transporting two-sector ATPase complex.
Probab=40.36  E-value=20  Score=14.09  Aligned_cols=49  Identities=12%  Similarity=0.064  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHH
Q ss_conf             9999999878999999999999999999997306222025899999999
Q gi|254780531|r  375 ATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLS  423 (452)
Q Consensus       375 v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~  423 (452)
                      +-...++.+|||+-+++..+|-.++...|+-...|-+=+=+.+|.++--
T Consensus       276 ~Es~ASE~aARM~AMdnAtdNA~~li~~Ltl~YNraRQA~ITqEl~EIv  324 (330)
T TIGR01146       276 LESAASEQAARMTAMDNATDNAGDLIKKLTLSYNRARQAAITQELIEIV  324 (330)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999988885325889999879888888767776888888868899988


No 83 
>PHA00369 H minor spike protein
Probab=39.20  E-value=21  Score=13.98  Aligned_cols=61  Identities=13%  Similarity=0.082  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8789999999999999999999973062220258999999999999999999999999720688
Q gi|254780531|r  382 IGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTAR  445 (452)
Q Consensus       382 iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~  445 (452)
                      .-+|+|.-++....++.+.-|-++.++|+.-.   -|-|.|++.|-...---+||.||.-.-|.
T Consensus       177 aTSRqNTKDsVYAQNEML~ynQkES~aRV~sI---l~NT~Lt~qQ~t~EIMR~~LTqAQ~~GQh  237 (337)
T PHA00369        177 ATSRENTKDSVYAQNEMLAYNQKESMSRVGSI---LENTSLTKQQQTSEIMRQMLTQAQTAGQH  237 (337)
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH---HHCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             11024540158877899988778889999999---84476107788999999999988763022


No 84 
>pfam04687 Microvir_H Microvirus H protein (pilot protein). A single molecule of H protein is found on each of the 12 spikes on the microvirus shell. H is involved in the ejection of the phage DNA, and at least one copy is injected into the host's periplasmic space along with the ssDNA viral genome. Part of H is thought to lie outside the shell, where it recognizes lipopolysaccharide from virus-sensitive strains. Part of H may lie within the capsid, since mutations in H can influence the DNA ejection mechanism by affecting the DNA-protein interactions. H may span the capsid through the hydrophilic channels formed by G proteins.
Probab=38.41  E-value=21  Score=13.91  Aligned_cols=60  Identities=13%  Similarity=0.082  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             878999999999999999999997306222025899999999999999999999999972068
Q gi|254780531|r  382 IGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTA  444 (452)
Q Consensus       382 iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~  444 (452)
                      +-+|+|.-+.....++.+.-|-++.++|+.-.   -|-|+|++.|-...---+||.||.-.-|
T Consensus       165 aTSRqNTKD~VYAQNEML~YnQkES~aRV~sI---leNT~LtkqQqt~EIMR~~LTqAQtaGQ  224 (310)
T pfam04687       165 ATSRQNTKDSVYAQNEMLAYNQKESQARVASI---LENTDLTKQQQTSEIMRQMLTQAQTAGQ  224 (310)
T ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             22124531368887899988778889999999---8447610778899999999998887520


No 85 
>pfam10498 IFT57 Intra-flagellar transport protein 57. Eukaryotic cilia and flagella are specialized organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bidirectional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated. This protein is known as Huntington-interacting protein-1 in humans.
Probab=37.56  E-value=22  Score=13.82  Aligned_cols=15  Identities=20%  Similarity=0.202  Sum_probs=5.8

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             899999999999999
Q gi|254780531|r  415 MASESTRLSALQTQQ  429 (452)
Q Consensus       415 ~A~e~t~l~~~q~~~  429 (452)
                      |.+..-+|++.+..+
T Consensus       271 yr~~~~~l~~~~~~y  285 (355)
T pfam10498       271 YREARRTLSQVQEKY  285 (355)
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             999999999999999


No 86 
>PRK12816 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=37.41  E-value=22  Score=13.81  Aligned_cols=40  Identities=15%  Similarity=0.191  Sum_probs=29.2

Q ss_pred             ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             0258999999999999999999999999720688987525
Q gi|254780531|r  412 DADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR  451 (452)
Q Consensus       412 D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~  451 (452)
                      .+|+.+||++|-..|=.+|+.+.|+.-+.+.-+.+-.|-|
T Consensus       225 NV~~~~EMv~mI~~qR~fe~~~K~i~t~De~~~~~~nl~R  264 (264)
T PRK12816        225 NVSIVEEMVTMIVAQRAYEINSKAIQTSDNMLGTANNLKR  264 (264)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             3659999999999999999999999999999999986269


No 87 
>PRK13424 F0F1 ATP synthase subunit gamma; Provisional
Probab=35.78  E-value=24  Score=13.65  Aligned_cols=49  Identities=6%  Similarity=-0.005  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHH
Q ss_conf             9999999878999999999999999999997306222025899999999
Q gi|254780531|r  375 ATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLS  423 (452)
Q Consensus       375 v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~  423 (452)
                      +....++.+|||..++...++..++...++....+.+=+-+.+|..+.-
T Consensus       235 ~es~aSE~~aRm~AM~~At~Na~e~i~~L~l~yNr~RQa~IT~EL~EIv  283 (291)
T PRK13424        235 LDTSASEHAARMAAMDNATRSCDDMIGSLTLLFNKTRQASITRDLMDIV  283 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9989999999999999899979999999999999999998899999999


No 88 
>PRK05841 flgE flagellar hook protein FlgE; Validated
Probab=35.29  E-value=20  Score=14.12  Aligned_cols=40  Identities=15%  Similarity=0.206  Sum_probs=32.7

Q ss_pred             ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             0258999999999999999999999999720688987525
Q gi|254780531|r  412 DADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR  451 (452)
Q Consensus       412 D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~  451 (452)
                      .+|+++|.++|=..|=-+||-..+..-+.+.-|-++.|=|
T Consensus       566 NVDLa~Eft~mIvtQR~yQANsKvITTsD~mLqelinLKR  605 (605)
T PRK05841        566 NVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLKK  605 (605)
T ss_pred             HHHHHHHHHHHHHHHHHCHHHCEEEEEHHHHHHHHHHHCC
T ss_conf             3058999999999876520541278768999999986259


No 89 
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=35.00  E-value=24  Score=13.57  Aligned_cols=74  Identities=9%  Similarity=-0.009  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999987899999999999999999999730622202589999999999999999999999997206889
Q gi|254780531|r  367 FIDTQIKCATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARI  446 (452)
Q Consensus       367 ~id~a~~~v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~v  446 (452)
                      .++..++.+...-+.|..|.+.|+..+..+..+...++.-+..+|+        +|.++=..++.   +++|-|+...++
T Consensus       606 ~l~~~l~~~~~~~G~i~~~~~~l~~~i~~~~~~i~~~~~rl~~~e~--------ry~~QF~ame~---~~~~mnsqs~~L  674 (684)
T PRK06664        606 MLLEYLKPYTQAGGIVYNKVKSLDEKIANNNKKVEEYEKKLESRER--------KLKGKFLTMDQ---TVKKNKKQGNYL  674 (684)
T ss_pred             HHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH---HHHHHHHHHHHH
T ss_conf             9999999876568645306667999998999999999999999999--------99999999999---999999999999


Q ss_pred             HHHHC
Q ss_conf             87525
Q gi|254780531|r  447 LSLFR  451 (452)
Q Consensus       447 L~L~~  451 (452)
                      =++++
T Consensus       675 ~~~~~  679 (684)
T PRK06664        675 KNFNK  679 (684)
T ss_pred             HHHHH
T ss_conf             98753


No 90 
>PRK12642 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=34.98  E-value=24  Score=13.57  Aligned_cols=39  Identities=13%  Similarity=0.174  Sum_probs=28.0

Q ss_pred             ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             025899999999999999999999999972068898752
Q gi|254780531|r  412 DADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLF  450 (452)
Q Consensus       412 D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~  450 (452)
                      .+|+++||++|-..|=.+|+.+.++.-+-+.-+...+.|
T Consensus       199 NVd~~~EM~~lI~~qRafe~~~k~i~~~D~~l~~ai~~l  237 (241)
T PRK12642        199 NVNAMTEMTRLISVSRAFESVSSLMRDSESSVSEAIKTL  237 (241)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             062999999999999999999999999999999999987


No 91 
>PRK13425 F0F1 ATP synthase subunit gamma; Provisional
Probab=34.91  E-value=24  Score=13.57  Aligned_cols=49  Identities=10%  Similarity=0.099  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHH
Q ss_conf             9999999878999999999999999999997306222025899999999
Q gi|254780531|r  375 ATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLS  423 (452)
Q Consensus       375 v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~  423 (452)
                      +....++.+|||..++...++..++...++....+.+=+-+..|.++.-
T Consensus       235 ~es~aSE~aaRm~AM~~At~Na~eli~~L~l~yNr~RQa~IT~EL~EIv  283 (291)
T PRK13425        235 LESNAAEQAARMTAMDSATENAKELLRTLNISYNRARQAAITKELSEIV  283 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999979999999999999998998899999999


No 92 
>pfam00231 ATP-synt ATP synthase.
Probab=32.38  E-value=27  Score=13.31  Aligned_cols=49  Identities=12%  Similarity=0.065  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHH
Q ss_conf             9999999878999999999999999999997306222025899999999
Q gi|254780531|r  375 ATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLS  423 (452)
Q Consensus       375 v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~  423 (452)
                      +....++.+|||..++...++..++...++....+.+=+-+.+|+.+.-
T Consensus       234 ~es~asE~~aR~~AM~~At~Na~e~i~~L~~~yNr~RQ~~IT~El~EIv  282 (288)
T pfam00231       234 LESLASEHAARMTAMDNATDNAKELIKKLTLQYNRARQAAITQELIEIV  282 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9989989999999999999979999999999999999999999999999


No 93 
>PRK12637 flgE flagellar hook protein FlgE; Provisional
Probab=32.30  E-value=20  Score=14.04  Aligned_cols=38  Identities=16%  Similarity=0.253  Sum_probs=28.2

Q ss_pred             ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             02589999999999999999999999997206889875
Q gi|254780531|r  412 DADMASESTRLSALQTQQQLAVQALSIVNNSTARILSL  449 (452)
Q Consensus       412 D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L  449 (452)
                      .+|+++|.++|=-.|=-+||...+..-+++.-|-++.|
T Consensus       435 NVDLa~Eft~mIvtQR~yQANSKvItTsDemLqelinL  472 (473)
T PRK12637        435 NVDMSRELVNMIVAQRTYQANAQTIKTQDEVMQVLMNM  472 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCEEEEEHHHHHHHHHHC
T ss_conf             40799999999998765014325887589999999705


No 94 
>pfam08898 DUF1843 Domain of unknown function (DUF1843). This domain is found at the C-terminus of a family of proteins that are functionally uncharacterized. The presumed domain is about 60 amino acid residues in length and is found independently in some proteins.
Probab=31.81  E-value=27  Score=13.25  Aligned_cols=39  Identities=8%  Similarity=0.243  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999987530377630356788999999999998
Q gi|254780531|r   84 AIDVMSTIKNKITAGVERGTDSKSIQSEITQLQSQLRDI  122 (452)
Q Consensus        84 ~~~~l~r~relavqa~n~~~dr~a~~~e~~~l~~~i~~i  122 (452)
                      ++.-|.+||.|+-++-.-=.++..|...+..|+.+|-++
T Consensus        12 asGDLa~MK~L~~qa~qqL~~~~~l~~Al~~L~~EIarl   50 (53)
T pfam08898        12 ASGDLAQMKALLAQAEQQLAQAGELAAALEKLKAEIARL   50 (53)
T ss_pred             HCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_conf             738599999999999998822057999999999999986


No 95 
>PRK13422 F0F1 ATP synthase subunit gamma; Provisional
Probab=30.39  E-value=29  Score=13.11  Aligned_cols=49  Identities=12%  Similarity=0.066  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHH
Q ss_conf             9999999878999999999999999999997306222025899999999
Q gi|254780531|r  375 ATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLS  423 (452)
Q Consensus       375 v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~  423 (452)
                      +....++.+|||..++...++-.++...++-...+.+=+-+..|.++.-
T Consensus       244 les~aSE~aaRm~AM~~AT~NA~emi~~Ltl~yNr~RQa~IT~El~EIv  292 (298)
T PRK13422        244 LENAACEQAARMMAMKNATDNASDIIDQLKLDYNKVRQAMITQELAEIC  292 (298)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999899839999999999999999998899999998


No 96 
>TIGR03323 alt_F1F0_F1_gam alternate F1F0 ATPase, F1 subunit gamma. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 gamma subunit of this apparent second ATP synthase.
Probab=28.17  E-value=32  Score=12.87  Aligned_cols=49  Identities=18%  Similarity=0.171  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHH
Q ss_conf             9999999878999999999999999999997306222025899999999
Q gi|254780531|r  375 ATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLS  423 (452)
Q Consensus       375 v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~  423 (452)
                      +....++.+|||..++...++..++...|+-...+.+=+=+.+|.++.-
T Consensus       231 leS~aSE~aaRm~AM~~At~NA~eli~~Ltl~yNr~RQa~IT~El~EIv  279 (285)
T TIGR03323       231 AESLASENASRLAAMQRAEKNIDELLDDLNRRFHRLRQSAIDEELFDVV  279 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9988889999999999999969999999999999999998899999998


No 97 
>COG0224 AtpG F0F1-type ATP synthase, gamma subunit [Energy production and conversion]
Probab=26.00  E-value=35  Score=12.63  Aligned_cols=49  Identities=8%  Similarity=0.008  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHH
Q ss_conf             9999999878999999999999999999997306222025899999999
Q gi|254780531|r  375 ATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLS  423 (452)
Q Consensus       375 v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~  423 (452)
                      +....++.+|||+.++...++..++...++-...+.+=+=+.+|.++.-
T Consensus       232 les~asE~aaRm~AM~~ATdNA~~lI~~l~l~yNk~RQa~ITqEL~EIV  280 (287)
T COG0224         232 LESKASEHAARMTAMKNATDNAGDLIKELTLVYNKARQAAITQELIEIV  280 (287)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999998999999998729999999999977999998899999999


No 98 
>PRK13874 conjugal transfer protein TrbJ; Provisional
Probab=25.60  E-value=35  Score=12.59  Aligned_cols=52  Identities=10%  Similarity=0.135  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999998753037763035678899999999
Q gi|254780531|r   67 IGLGSSKVDIAKAGMSKAIDVMSTIKNKITAGVERGTDSKSIQSEITQLQSQ  118 (452)
Q Consensus        67 ~~~a~~~l~~ae~~l~~~~~~l~r~relavqa~n~~~dr~a~~~e~~~l~~~  118 (452)
                      ++++.+...+-.+.+..+...|.++..|.-++-.=.++...+..+++.++-+
T Consensus        66 ~NqarNl~~Lp~s~~~~l~~~l~~~~~ll~qaq~Iay~v~~id~~f~~~yp~  117 (233)
T PRK13874         66 INQARNLASLPYSSLQQLQQSLARTQQLLGQAQGIAYDVQSIDQAFQQTYPE  117 (233)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf             9999987258856999999999999999999885767899799899771800


No 99 
>PRK08425 flgE flagellar hook protein FlgE; Validated
Probab=24.52  E-value=37  Score=12.46  Aligned_cols=40  Identities=18%  Similarity=0.249  Sum_probs=31.2

Q ss_pred             ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             0258999999999999999999999999720688987525
Q gi|254780531|r  412 DADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR  451 (452)
Q Consensus       412 D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~  451 (452)
                      -+|+++|.++|=-.|--+||--.+..-+.+.-|-++.|=|
T Consensus       677 NVDLs~Eft~mI~tQRgyQANsKvITTsDemLqelinLKR  716 (716)
T PRK08425        677 NVDLSRSLTQLIVVQRGFQANSKTITTSDQMLNTLLQLKQ  716 (716)
T ss_pred             HHHHHHHHHHHHHHHHHCHHHCCEEEEHHHHHHHHHHHCC
T ss_conf             2159999999999766420304378618999999986469


No 100
>COG1749 FlgE Flagellar hook protein FlgE [Cell motility and secretion]
Probab=24.34  E-value=30  Score=13.03  Aligned_cols=40  Identities=23%  Similarity=0.283  Sum_probs=29.3

Q ss_pred             ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             0258999999999999999999999999720688987525
Q gi|254780531|r  412 DADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR  451 (452)
Q Consensus       412 D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~  451 (452)
                      -+|+++|-++|=-.|=-+||-...+.-..+.-|-+++|-|
T Consensus       384 NVDls~EltnmIvaQR~YqANsK~i~T~D~mlq~lvnLkr  423 (423)
T COG1749         384 NVDLAKELTNLIVAQRGYQANAKVITTSDQMLQTLVNLKR  423 (423)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHCC
T ss_conf             2118999999888665044455068605899999986229


No 101
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=23.13  E-value=39  Score=12.30  Aligned_cols=74  Identities=19%  Similarity=0.240  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999998789999999999999999999973062220258999999999999999999999999720688
Q gi|254780531|r  366 SFIDTQIKCATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTAR  445 (452)
Q Consensus       366 ~~id~a~~~v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~  445 (452)
                      ..++..++.....-+-|..+...++.++..+.+....++.-+.++|+        +|.++=+.++   .+++|.|+...+
T Consensus       389 ~~~~~~l~~~~~~~G~i~~~~~~l~~~i~~l~~~i~~l~~rl~~~e~--------~~~~QFtame---~~~~~mnsq~s~  457 (463)
T PRK08032        389 TQIATNLKSWLSTTGIIKAATDGVNKTLKKLTKQYNAVSDSIDATVA--------RYKAQFTQLD---KMMTSLNSTSSY  457 (463)
T ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH---HHHHHHHHHHHH
T ss_conf             99999999875789720157667999999999999999999999999--------9999999999---999999989999


Q ss_pred             HHHHH
Q ss_conf             98752
Q gi|254780531|r  446 ILSLF  450 (452)
Q Consensus       446 vL~L~  450 (452)
                      +-+.|
T Consensus       458 L~qq~  462 (463)
T PRK08032        458 LTQQF  462 (463)
T ss_pred             HHHHH
T ss_conf             99841


No 102
>PRK13423 F0F1 ATP synthase subunit gamma; Provisional
Probab=21.15  E-value=43  Score=12.05  Aligned_cols=49  Identities=12%  Similarity=0.085  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHH
Q ss_conf             9999999878999999999999999999997306222025899999999
Q gi|254780531|r  375 ATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLS  423 (452)
Q Consensus       375 v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~  423 (452)
                      +....++-+|||..++...++..++...++....+.+=+-+.+|+.+.-
T Consensus       231 les~aSE~aaRm~AM~~At~Na~eli~~L~~~yNr~RQa~IT~El~EIv  279 (286)
T PRK13423        231 LESVASEHGARMTAMDSASKNATEMIGKLTLQYNRARQAAITTELMEII  279 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999899859999999999999999999999999999


No 103
>PRK05621 F0F1 ATP synthase subunit gamma; Validated
Probab=20.94  E-value=43  Score=12.02  Aligned_cols=49  Identities=14%  Similarity=0.064  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHH
Q ss_conf             9999999878999999999999999999997306222025899999999
Q gi|254780531|r  375 ATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLS  423 (452)
Q Consensus       375 v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~  423 (452)
                      +....++.+|||..++...++.+++...++....+.+=+=+.+|..+.-
T Consensus       233 les~aSE~aaRm~AM~~At~Na~eli~~L~~~yNr~RQ~~IT~El~EIv  281 (287)
T PRK05621        233 LENKASEQAARMTAMKNATDNAKDLIKKLTLVYNRARQAAITQEITEIV  281 (287)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999989999999999998999999999999999


No 104
>PRK13426 F0F1 ATP synthase subunit gamma; Provisional
Probab=20.87  E-value=44  Score=12.01  Aligned_cols=49  Identities=8%  Similarity=0.100  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHH
Q ss_conf             9999999878999999999999999999997306222025899999999
Q gi|254780531|r  375 ATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLS  423 (452)
Q Consensus       375 v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~  423 (452)
                      +....++.+|||..++...++..++...++....+.+=+-+.+|+.+.-
T Consensus       236 les~asE~aaRm~AM~~At~Na~e~i~~Ltl~yNr~RQa~IT~El~EIv  284 (289)
T PRK13426        236 LDSNASEHAARTLAMQIATDNANELIQELTKQYNKTRQQAITNELLDIV  284 (289)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999959999999999999999999899999997


No 105
>PRK06803 flgE flagellar hook protein FlgE; Validated
Probab=20.49  E-value=44  Score=11.97  Aligned_cols=37  Identities=16%  Similarity=0.240  Sum_probs=26.8

Q ss_pred             ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             0258999999999999999999999999720688987
Q gi|254780531|r  412 DADMASESTRLSALQTQQQLAVQALSIVNNSTARILS  448 (452)
Q Consensus       412 D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~  448 (452)
                      -+|+++|.++|=..|=-+||...+..-+.+.-|-++-
T Consensus       360 NVDla~Eft~mI~tQR~yqANskvItT~DemlqelvN  396 (398)
T PRK06803        360 NVDITAELVGLMTAQRNYQANAKVISTNDTMQQALFN  396 (398)
T ss_pred             HCHHHHHHHHHHHHHHHHHHHCEEEEEHHHHHHHHHH
T ss_conf             1409999999999987635642488748999999974


No 106
>PRK13427 F0F1 ATP synthase subunit gamma; Provisional
Probab=20.38  E-value=45  Score=11.95  Aligned_cols=49  Identities=14%  Similarity=0.144  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHH
Q ss_conf             9999999878999999999999999999997306222025899999999
Q gi|254780531|r  375 ATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLS  423 (452)
Q Consensus       375 v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~  423 (452)
                      +....++-+|||..++...++..++...++-...+.+=+=+.+|..+.-
T Consensus       231 les~aSE~~aRm~AM~~At~Na~e~i~~L~l~yNr~RQa~IT~El~EIV  279 (286)
T PRK13427        231 LEANCSEQIARRIAMKSATDAASEMIKLLTRGYNRVRQAKITQEISEIV  279 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9989999999999999999869999999999999999998899999998


No 107
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase; InterPro: IPR014265   Proteins in this entry are putative periplasmic sensor signal transduction histidine kinases. They all contain a GAF domain that is present in phytochromes and cGMP-specific phosphodiesterases, and which has been experimentally proven to be involved in protein:protein interactions. They also contain a C-terminal histidine kinase domain, which is composed of a dimerisation sub-domain and an ATP/ADP-binding phosphotransfer, or catalytic, sub-domain. The proteins in this entry are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system  common in Gram-positive bacteria, where members of IPR014264 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=20.21  E-value=45  Score=11.93  Aligned_cols=77  Identities=10%  Similarity=0.117  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999989999999999999999999999999998753037763-035678899999999999863
Q gi|254780531|r   48 SIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITAGVERGT-DSKSIQSEITQLQSQLRDIAR  124 (452)
Q Consensus        48 ~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l~~~~~~l~r~relavqa~n~~~-dr~a~~~e~~~l~~~i~~ian  124 (452)
                      .++=-||.=+..+.=-.+|+..=+..=.=.|-.|+.|.+-.+|||.+.-|--+... +.+...-++.+|.+++..-.+
T Consensus       492 FvVHDLKNLvaQLSL~l~NA~~Hk~NPeFq~DmL~Tv~~~v~RM~~ll~qLr~~~~p~~~~~~~~l~~L~~~~~~~k~  569 (696)
T TIGR02916       492 FVVHDLKNLVAQLSLLLRNAERHKDNPEFQDDMLETVESAVNRMKKLLAQLREKGLPEEEKKTVDLVDLLRRVIASKR  569 (696)
T ss_pred             EEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEHHHHHHHHHHHHHH
T ss_conf             211025899999999999887417896689999998999999999999997306897405641038999999999986


Done!