HHsearch alignment for GI: 254780531 and conserved domain: pfam00669
>pfam00669 Flagellin_N Bacterial flagellin N-terminal helical region. Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.
Probab=100.00 E-value=2.2e-36 Score=240.00 Aligned_cols=135 Identities=31% Similarity=0.411 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 04579999999999999999999999985122368831389999999999999999999999899999999999999999
Q gi|254780531|r 4 ILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGMSK 83 (452)
Q Consensus 4 i~tn~~~~~al~~l~~~~~~l~~~~~qlstGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~~~l~~ae~~l~~ 83 (452)
T Consensus 1 I~tN~~a~~al~~l~~~~~~l~~~~~qlSTGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~N~~~a~~~l~~~e~al~~ 80 (139)
T pfam00669 1 ISTNALALAARRTLNRNQAELQKAQEELSTGLRIDSALDLGAGTAISVSLRSQIRGLSQAVRNNNLGISRLQTAQGALSE 80 (139)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 96519999999999999999999999987268457844269999999999999999999999899999999978899999
Q ss_pred HHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9999999999875303776---303567889999999999986300121100135666
Q gi|254780531|r 84 AIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDL 138 (452)
Q Consensus 84 ~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~ 138 (452)
T Consensus 81 i~~~l~r~kel~v~a~n~~~~~~dr~ai~~Ei~~l~~~i~~~an~t~~nG~~lFsGt~ 138 (139)
T pfam00669 81 VTDILQRLRELAVQAANGGNSDIDRASAQAEIQQLTSELNNIANTTSFNGEYLFSGTN 138 (139)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 9999999999999884689999999999999999999999999857718730128969