HHsearch alignment of GI: 254780531 and MMDB domain: 1io1_A_1-117_348-398

>1io1_A (A:1-117,A:348-398) Phase 1 flagellin; beta-folium, structural protein; 2.00A {Salmonella typhimurium}
Probab=99.97  E-value=1.4e-29  Score=198.05  Aligned_cols=91  Identities=19%  Similarity=0.253  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999998999999999999999999999999999875303776---303567889999999999986300121
Q gi|254780531|r   53 MKSDNGALSAVSDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFN  129 (452)
Q Consensus        53 l~~~~~~~~q~~~n~~~a~~~l~~ae~~l~~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~n  129 (452)
                      |++++.+++||.+|+.++++||+++|++|.++.++|+|||||+||++|++   .||.+|+.|+++|++||.+|+|+++||
T Consensus         1 lrsqi~~l~q~~~N~~da~s~lqtAe~aL~~i~~iL~rirelavqaaNgt~s~~DR~ai~~Ei~qL~~eI~~ianst~fn   80 (168)
T 1io1_A            1 FTANIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSGQTQFN   80 (168)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCBT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             94166659999998999999999999999999999999999999850578999999999999999999999999736208


Q ss_pred             HHHCCCCCCCCCCC
Q ss_conf             10013566654322
Q gi|254780531|r  130 GENWLRTDLGSSTA  143 (452)
Q Consensus       130 G~~l~~g~~~~~~~  143 (452)
                      |+|||+|+.....+
T Consensus        81 G~~Lf~Gs~t~~~~   94 (168)
T 1io1_A           81 GVKVLAQDNTLTIQ   94 (168)
T ss_dssp             TBCTTTSCEEEEEE
T ss_pred             CCCCCCCCCCEEEE
T ss_conf             80112567725897