HHsearch alignment of GI: 254780531 and MMDB domain: 1io1_A_1-117_348-398
>1io1_A (A:1-117,A:348-398) Phase 1 flagellin; beta-folium, structural protein; 2.00A {Salmonella typhimurium}
Probab=99.97 E-value=1.4e-29 Score=198.05 Aligned_cols=91 Identities=19% Similarity=0.253 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999998999999999999999999999999999875303776---303567889999999999986300121
Q gi|254780531|r 53 MKSDNGALSAVSDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFN 129 (452)
Q Consensus 53 l~~~~~~~~q~~~n~~~a~~~l~~ae~~l~~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~n 129 (452)
|++++.+++||.+|+.++++||+++|++|.++.++|+|||||+||++|++ .||.+|+.|+++|++||.+|+|+++||
T Consensus 1 lrsqi~~l~q~~~N~~da~s~lqtAe~aL~~i~~iL~rirelavqaaNgt~s~~DR~ai~~Ei~qL~~eI~~ianst~fn 80 (168)
T 1io1_A 1 FTANIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSGQTQFN 80 (168)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCBT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 94166659999998999999999999999999999999999999850578999999999999999999999999736208
Q ss_pred HHHCCCCCCCCCCC
Q ss_conf 10013566654322
Q gi|254780531|r 130 GENWLRTDLGSSTA 143 (452)
Q Consensus 130 G~~l~~g~~~~~~~ 143 (452)
|+|||+|+.....+
T Consensus 81 G~~Lf~Gs~t~~~~ 94 (168)
T 1io1_A 81 GVKVLAQDNTLTIQ 94 (168)
T ss_dssp TBCTTTSCEEEEEE
T ss_pred CCCCCCCCCCEEEE
T ss_conf 80112567725897