HHsearch alignment of GI: 254780531 and MMDB domain: 1ucu_A_1-40_455-494

>1ucu_A (A:1-40,A:455-494) Phase 1 flagellin; flagellar filament, cryo-electron microscopy, helical reconstruction, structural protein; 4.00A {Salmonella typhimurium}

Probab=99.35  E-value=2.5e-12  Score=92.60  Aligned_cols=58  Identities=26%  Similarity=0.318  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHHCCEE-ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             999999999997306222-0258999999999999999999999999720688987525
Q gi|254780531|r  394 DFIKLMRDAVEKGVGRLV-DADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR  451 (452)
Q Consensus       394 ~~~~~~~~~~~~~~s~i~-D~D~A~e~t~l~~~q~~~Qaa~~~laqan~~~~~vL~L~~  451 (452)
                      ..+..-.+.+..++=--. |+|||+|+++|+|.|||+|++++||+|||+.||.||+|||
T Consensus        22 ~~l~~sm~rLSSG~RINsADaD~A~E~~~~tk~qIL~Qa~~amLaQAN~~pq~vl~LLq   80 (80)
T 1ucu_A           22 SALGTAIERLSSGLRINSADSDYATEVSNMSRAQILQQAGTSVLAQANQVPQNVLSLLR   80 (80)
T ss_dssp             HHHHHHHHHHHTSCCTTTSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHCCCCCCCHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC
T ss_conf             99999999861148647821319999999999999999999999997416789998409