Query gi|254780531|ref|YP_003064944.1| flagellin domain-containing protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 452 No_of_seqs 143 out of 3473 Neff 12.3 Searched_HMMs 13730 Date Wed Jun 1 11:00:43 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780531.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1io1a_ e.32.1.1 (A:) Phase 1 100.0 6.3E-37 4.6E-41 240.6 20.5 90 56-146 1-93 (395) 2 d2jdig1 c.49.2.1 (G:1-272) ATP 26.8 12 0.00085 12.7 5.1 49 375-423 218-266 (272) 3 d1dt9a3 d.91.1.1 (A:5-142) N-t 9.0 33 0.0024 10.0 2.5 55 83-138 40-96 (138) 4 d1t9ka_ c.124.1.5 (A:) Probabl 7.7 40 0.0029 9.4 3.7 68 67-134 75-142 (340) 5 d256ba_ a.24.3.1 (A:) Cytochro 7.4 43 0.0031 9.3 6.9 21 79-99 63-83 (106) 6 d2c52b1 a.153.1.1 (B:303-353) 5.8 59 0.0043 8.4 2.3 21 112-132 10-30 (51) 7 d1aqta1 a.2.10.1 (A:87-136) Ep 5.1 69 0.005 8.0 3.0 25 407-431 20-44 (50) 8 d1lvfa_ a.47.2.1 (A:) Syntaxin 4.9 71 0.0052 7.9 2.5 16 107-122 84-99 (106) 9 d1vcsa1 a.47.2.1 (A:8-96) Vesi 4.9 73 0.0053 7.9 7.4 50 71-122 30-79 (89) 10 d1pzqa_ a.34.3.1 (A:) Erythron 4.8 74 0.0054 7.8 2.2 30 360-389 9-40 (60) No 1 >d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium [TaxId: 90371]} Probab=100.00 E-value=6.3e-37 Score=240.60 Aligned_cols=90 Identities=19% Similarity=0.260 Sum_probs=82.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999998999999999999999999999999999875303776---303567889999999999986300121100 Q gi|254780531|r 56 DNGALSAVSDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFNGEN 132 (452) Q Consensus 56 ~~~~~~q~~~n~~~a~~~l~~ae~~l~~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~~ 132 (452) +|++|+|++||++++++|||++|++|+++++||+|||||+||++|++ .||++|+.|+++|++||++|+++|+|||++ T Consensus 1 ~i~gl~qa~~N~~d~~s~lqtae~al~~~~~iL~r~reLavqaan~t~~~~dr~ai~~E~~~l~~ei~~ia~~T~fng~~ 80 (395) T d1io1a_ 1 NIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSGQTQFNGVK 80 (395) T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBC T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEECCCC T ss_conf 97138899998999999999999999999999999999999850578999999999999999999999999737028802 Q ss_pred CCCCCCCCCCCCCC Q ss_conf 13566654322334 Q gi|254780531|r 133 WLRTDLGSSTASIA 146 (452) Q Consensus 133 l~~g~~~~~~~~~~ 146 (452) ||+|+.... ++.+ T Consensus 81 Ll~Gs~~~~-~~~g 93 (395) T d1io1a_ 81 VLAQDNTLT-IQVG 93 (395) T ss_dssp TTTSCEEEE-EECS T ss_pred CCCCCCCEE-EEEC T ss_conf 235567258-9724 No 2 >d2jdig1 c.49.2.1 (G:1-272) ATP synthase (F1-ATPase), gamma subunit {Cow (Bos taurus) [TaxId: 9913]} Probab=26.78 E-value=12 Score=12.72 Aligned_cols=49 Identities=10% Similarity=0.046 Sum_probs=43.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHH Q ss_conf 9999999878999999999999999999997306222025899999999 Q gi|254780531|r 375 ATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLS 423 (452) Q Consensus 375 v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~ 423 (452) +....++-+|||..++...++..++...++....+.+=+-+.+|+.+.- T Consensus 218 ~es~aSE~aaRm~AM~~At~Na~eli~~L~~~yNr~RQ~~IT~El~EIv 266 (272) T d2jdig1 218 KESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEII 266 (272) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9989999999999999999849999999999999999999999999999 No 3 >d1dt9a3 d.91.1.1 (A:5-142) N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]} Probab=9.00 E-value=33 Score=9.97 Aligned_cols=55 Identities=15% Similarity=0.137 Sum_probs=37.0 Q ss_pred HHHHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 999999999998753037--76303567889999999999986300121100135666 Q gi|254780531|r 83 KAIDVMSTIKNKITAGVE--RGTDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDL 138 (452) Q Consensus 83 ~~~~~l~r~relavqa~n--~~~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~ 138 (452) +++++.+.+++=--+|+| +-..|.+.+.-+...++.|..+ +.+=-||--+|.|.. T Consensus 40 ~I~~v~~~L~~E~g~AsNIKsk~tR~~V~~Ai~s~~~rLk~y-~k~P~NGLvif~G~v 96 (138) T d1dt9a3 40 QISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLY-NKVPPNGLVVYCGTI 96 (138) T ss_dssp CHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHHHHHHTTC-SSCCTTCEEEEEEEE T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCEEEEEEEE T ss_conf 589999999999877631221767899999999999999717-889998089998678 No 4 >d1t9ka_ c.124.1.5 (A:) Probable methylthioribose-1-phosphate isomerase TM0911 {Thermotoga maritima [TaxId: 2336]} Probab=7.70 E-value=40 Score=9.42 Aligned_cols=68 Identities=6% Similarity=0.096 Sum_probs=40.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 99999999999999999999999999987530377630356788999999999998630012110013 Q gi|254780531|r 67 IGLGSSKVDIAKAGMSKAIDVMSTIKNKITAGVERGTDSKSIQSEITQLQSQLRDIARGSSFNGENWL 134 (452) Q Consensus 67 ~~~a~~~l~~ae~~l~~~~~~l~r~relavqa~n~~~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~ 134 (452) +..+...|..+--+.-+....+.||+....+......-++.+..+...+.++.......---.|..++ T Consensus 75 l~~~~~~L~saRPTAVNL~wAv~r~~~~l~~~~~~e~~~~~l~~~a~~i~~ed~~~~~~Ig~~g~~lI 142 (340) T d1t9ka_ 75 MKQVKETLARTRPTAVNLFWALNRMEKVFFENADRENLFEILENEALKMAYEDIEVNKAIGKNGAQLI 142 (340) T ss_dssp HHHHHHHHHTSCSSCTHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999998746744557999999998865313444779999999999999999999998899988873 No 5 >d256ba_ a.24.3.1 (A:) Cytochrome b562 {Escherichia coli [TaxId: 562]} Probab=7.41 E-value=43 Score=9.29 Aligned_cols=21 Identities=10% Similarity=0.156 Sum_probs=13.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHC Q ss_conf 999999999999999875303 Q gi|254780531|r 79 AGMSKAIDVMSTIKNKITAGV 99 (452) Q Consensus 79 ~~l~~~~~~l~r~relavqa~ 99 (452) -+++.+...|.++.+|+-++. T Consensus 63 ~g~d~L~~~ld~i~~la~~G~ 83 (106) T d256ba_ 63 HGFDILVGQIDDALKLANEGK 83 (106) T ss_dssp HHHHHHHHHHHHHHHHHHTTC T ss_pred HHHHHHHHHHHHHHHHHHCCC T ss_conf 779999999999999988699 No 6 >d2c52b1 a.153.1.1 (B:303-353) Nuclear receptor coactivator 1, NCOA1 {Human (Homo sapiens) [TaxId: 9606]} Probab=5.76 E-value=59 Score=8.43 Aligned_cols=21 Identities=19% Similarity=0.074 Sum_probs=16.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999986300121100 Q gi|254780531|r 112 ITQLQSQLRDIARGSSFNGEN 132 (452) Q Consensus 112 ~~~l~~~i~~ian~t~~nG~~ 132 (452) =..|++|+....+++++.|-- T Consensus 10 E~ALLdQL~t~L~n~D~~~Le 30 (51) T d2c52b1 10 EKALLEQLVSFLSGKDETELA 30 (51) T ss_dssp HHHHHHHHHHHHHTCSGGGTC T ss_pred HHHHHHHHHHHHHCCCHHHHH T ss_conf 889999999998147626899 No 7 >d1aqta1 a.2.10.1 (A:87-136) Epsilon subunit of F1F0-ATP synthase C-terminal domain {Escherichia coli [TaxId: 562]} Probab=5.07 E-value=69 Score=7.99 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=17.2 Q ss_pred HCCEEECCHHHHHHHHHHHHHHHHH Q ss_conf 0622202589999999999999999 Q gi|254780531|r 407 VGRLVDADMASESTRLSALQTQQQL 431 (452) Q Consensus 407 ~s~i~D~D~A~e~t~l~~~q~~~Qa 431 (452) ...-.|.||+.+.+.|...-.++++ T Consensus 20 ~~~~~d~dy~~a~a~La~A~AqL~~ 44 (50) T d1aqta1 20 SSSHGDVDYAQASAELAKAIAQLRV 44 (50) T ss_dssp TTCSSSHHHHHHHHHHHHHHHHHHH T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 7476403499999999999999999 No 8 >d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=4.94 E-value=71 Score=7.91 Aligned_cols=16 Identities=25% Similarity=0.281 Sum_probs=6.1 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 6788999999999998 Q gi|254780531|r 107 SIQSEITQLQSQLRDI 122 (452) Q Consensus 107 a~~~e~~~l~~~i~~i 122 (452) ....=+.+.+.+|.++ T Consensus 84 ~Rr~fi~~~~~~I~~~ 99 (106) T d1lvfa_ 84 IRKAFITSTRQIVRDM 99 (106) T ss_dssp HHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH T ss_conf 9999999999999999 No 9 >d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]} Probab=4.87 E-value=73 Score=7.86 Aligned_cols=50 Identities=4% Similarity=0.119 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999987530377630356788999999999998 Q gi|254780531|r 71 SSKVDIAKAGMSKAIDVMSTIKNKITAGVERGTDSKSIQSEITQLQSQLRDI 122 (452) Q Consensus 71 ~~~l~~ae~~l~~~~~~l~r~relavqa~n~~~dr~a~~~e~~~l~~~i~~i 122 (452) ...+.-.|..|+++..+|..|.-=+-.. .+..|..+..-+...+.+|..+ T Consensus 30 k~~l~~ie~~leEA~ell~qMelEvr~~--p~s~R~~~~~klr~Yk~dl~~l 79 (89) T d1vcsa1 30 KQMVANVEKQLEEARELLEQMDLEVREI--PPQSRGMYSNRMRSYKQEMGKL 79 (89) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTS--CTTTHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHH T ss_conf 8999999976899999999999998749--8777999999999999999999 No 10 >d1pzqa_ a.34.3.1 (A:) Erythronolide synthase {Saccharopolyspora erythraea [TaxId: 1836]} Probab=4.82 E-value=74 Score=7.83 Aligned_cols=30 Identities=7% Similarity=0.240 Sum_probs=0.0 Q ss_pred CHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH Q ss_conf 0578999999999999999--99987899999 Q gi|254780531|r 360 AMEEMVSFIDTQIKCATAA--AGKIGSISSRI 389 (452) Q Consensus 360 ~~~~al~~id~a~~~v~~~--ra~iGa~~nrl 389 (452) ++..-++.++.|++.+... .+++|+|+..| T Consensus 9 ~ig~rld~le~al~al~~~~gh~dvg~rle~l 40 (60) T d1pzqa_ 9 DIGDRLDELEKALEALSAEDGHDDVGQRLESL 40 (60) T ss_dssp TTHHHHHHHHHHHHHHTTSSCCHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHH T ss_conf 62365889999998365210410799999999 Done!