Query         gi|254780531|ref|YP_003064944.1| flagellin domain-containing protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 452
No_of_seqs    143 out of 3473
Neff          12.3
Searched_HMMs 13730
Date          Wed Jun  1 11:00:43 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780531.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1io1a_ e.32.1.1 (A:) Phase 1  100.0 6.3E-37 4.6E-41  240.6  20.5   90   56-146     1-93  (395)
  2 d2jdig1 c.49.2.1 (G:1-272) ATP  26.8      12 0.00085   12.7   5.1   49  375-423   218-266 (272)
  3 d1dt9a3 d.91.1.1 (A:5-142) N-t   9.0      33  0.0024   10.0   2.5   55   83-138    40-96  (138)
  4 d1t9ka_ c.124.1.5 (A:) Probabl   7.7      40  0.0029    9.4   3.7   68   67-134    75-142 (340)
  5 d256ba_ a.24.3.1 (A:) Cytochro   7.4      43  0.0031    9.3   6.9   21   79-99     63-83  (106)
  6 d2c52b1 a.153.1.1 (B:303-353)    5.8      59  0.0043    8.4   2.3   21  112-132    10-30  (51)
  7 d1aqta1 a.2.10.1 (A:87-136) Ep   5.1      69   0.005    8.0   3.0   25  407-431    20-44  (50)
  8 d1lvfa_ a.47.2.1 (A:) Syntaxin   4.9      71  0.0052    7.9   2.5   16  107-122    84-99  (106)
  9 d1vcsa1 a.47.2.1 (A:8-96) Vesi   4.9      73  0.0053    7.9   7.4   50   71-122    30-79  (89)
 10 d1pzqa_ a.34.3.1 (A:) Erythron   4.8      74  0.0054    7.8   2.2   30  360-389     9-40  (60)

No 1  
>d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium [TaxId: 90371]}
Probab=100.00  E-value=6.3e-37  Score=240.60  Aligned_cols=90  Identities=19%  Similarity=0.260  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999998999999999999999999999999999875303776---303567889999999999986300121100
Q gi|254780531|r   56 DNGALSAVSDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITAGVERG---TDSKSIQSEITQLQSQLRDIARGSSFNGEN  132 (452)
Q Consensus        56 ~~~~~~q~~~n~~~a~~~l~~ae~~l~~~~~~l~r~relavqa~n~~---~dr~a~~~e~~~l~~~i~~ian~t~~nG~~  132 (452)
                      +|++|+|++||++++++|||++|++|+++++||+|||||+||++|++   .||++|+.|+++|++||++|+++|+|||++
T Consensus         1 ~i~gl~qa~~N~~d~~s~lqtae~al~~~~~iL~r~reLavqaan~t~~~~dr~ai~~E~~~l~~ei~~ia~~T~fng~~   80 (395)
T d1io1a_           1 NIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSGQTQFNGVK   80 (395)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEECCCC
T ss_conf             97138899998999999999999999999999999999999850578999999999999999999999999737028802


Q ss_pred             CCCCCCCCCCCCCC
Q ss_conf             13566654322334
Q gi|254780531|r  133 WLRTDLGSSTASIA  146 (452)
Q Consensus       133 l~~g~~~~~~~~~~  146 (452)
                      ||+|+.... ++.+
T Consensus        81 Ll~Gs~~~~-~~~g   93 (395)
T d1io1a_          81 VLAQDNTLT-IQVG   93 (395)
T ss_dssp             TTTSCEEEE-EECS
T ss_pred             CCCCCCCEE-EEEC
T ss_conf             235567258-9724


No 2  
>d2jdig1 c.49.2.1 (G:1-272) ATP synthase (F1-ATPase), gamma subunit {Cow (Bos taurus) [TaxId: 9913]}
Probab=26.78  E-value=12  Score=12.72  Aligned_cols=49  Identities=10%  Similarity=0.046  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHH
Q ss_conf             9999999878999999999999999999997306222025899999999
Q gi|254780531|r  375 ATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLS  423 (452)
Q Consensus       375 v~~~ra~iGa~~nrle~~~~~~~~~~~~~~~~~s~i~D~D~A~e~t~l~  423 (452)
                      +....++-+|||..++...++..++...++....+.+=+-+.+|+.+.-
T Consensus       218 ~es~aSE~aaRm~AM~~At~Na~eli~~L~~~yNr~RQ~~IT~El~EIv  266 (272)
T d2jdig1         218 KESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEII  266 (272)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9989999999999999999849999999999999999999999999999


No 3  
>d1dt9a3 d.91.1.1 (A:5-142) N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.00  E-value=33  Score=9.97  Aligned_cols=55  Identities=15%  Similarity=0.137  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             999999999998753037--76303567889999999999986300121100135666
Q gi|254780531|r   83 KAIDVMSTIKNKITAGVE--RGTDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDL  138 (452)
Q Consensus        83 ~~~~~l~r~relavqa~n--~~~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~~g~~  138 (452)
                      +++++.+.+++=--+|+|  +-..|.+.+.-+...++.|..+ +.+=-||--+|.|..
T Consensus        40 ~I~~v~~~L~~E~g~AsNIKsk~tR~~V~~Ai~s~~~rLk~y-~k~P~NGLvif~G~v   96 (138)
T d1dt9a3          40 QISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLY-NKVPPNGLVVYCGTI   96 (138)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHHHHHHTTC-SSCCTTCEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCEEEEEEEE
T ss_conf             589999999999877631221767899999999999999717-889998089998678


No 4  
>d1t9ka_ c.124.1.5 (A:) Probable methylthioribose-1-phosphate isomerase TM0911 {Thermotoga maritima [TaxId: 2336]}
Probab=7.70  E-value=40  Score=9.42  Aligned_cols=68  Identities=6%  Similarity=0.096  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999999999999999999999987530377630356788999999999998630012110013
Q gi|254780531|r   67 IGLGSSKVDIAKAGMSKAIDVMSTIKNKITAGVERGTDSKSIQSEITQLQSQLRDIARGSSFNGENWL  134 (452)
Q Consensus        67 ~~~a~~~l~~ae~~l~~~~~~l~r~relavqa~n~~~dr~a~~~e~~~l~~~i~~ian~t~~nG~~l~  134 (452)
                      +..+...|..+--+.-+....+.||+....+......-++.+..+...+.++.......---.|..++
T Consensus        75 l~~~~~~L~saRPTAVNL~wAv~r~~~~l~~~~~~e~~~~~l~~~a~~i~~ed~~~~~~Ig~~g~~lI  142 (340)
T d1t9ka_          75 MKQVKETLARTRPTAVNLFWALNRMEKVFFENADRENLFEILENEALKMAYEDIEVNKAIGKNGAQLI  142 (340)
T ss_dssp             HHHHHHHHHTSCSSCTHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999998746744557999999998865313444779999999999999999999998899988873


No 5  
>d256ba_ a.24.3.1 (A:) Cytochrome b562 {Escherichia coli [TaxId: 562]}
Probab=7.41  E-value=43  Score=9.29  Aligned_cols=21  Identities=10%  Similarity=0.156  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHC
Q ss_conf             999999999999999875303
Q gi|254780531|r   79 AGMSKAIDVMSTIKNKITAGV   99 (452)
Q Consensus        79 ~~l~~~~~~l~r~relavqa~   99 (452)
                      -+++.+...|.++.+|+-++.
T Consensus        63 ~g~d~L~~~ld~i~~la~~G~   83 (106)
T d256ba_          63 HGFDILVGQIDDALKLANEGK   83 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHCCC
T ss_conf             779999999999999988699


No 6  
>d2c52b1 a.153.1.1 (B:303-353) Nuclear receptor coactivator 1, NCOA1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.76  E-value=59  Score=8.43  Aligned_cols=21  Identities=19%  Similarity=0.074  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999986300121100
Q gi|254780531|r  112 ITQLQSQLRDIARGSSFNGEN  132 (452)
Q Consensus       112 ~~~l~~~i~~ian~t~~nG~~  132 (452)
                      =..|++|+....+++++.|--
T Consensus        10 E~ALLdQL~t~L~n~D~~~Le   30 (51)
T d2c52b1          10 EKALLEQLVSFLSGKDETELA   30 (51)
T ss_dssp             HHHHHHHHHHHHHTCSGGGTC
T ss_pred             HHHHHHHHHHHHHCCCHHHHH
T ss_conf             889999999998147626899


No 7  
>d1aqta1 a.2.10.1 (A:87-136) Epsilon subunit of F1F0-ATP synthase C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=5.07  E-value=69  Score=7.99  Aligned_cols=25  Identities=24%  Similarity=0.211  Sum_probs=17.2

Q ss_pred             HCCEEECCHHHHHHHHHHHHHHHHH
Q ss_conf             0622202589999999999999999
Q gi|254780531|r  407 VGRLVDADMASESTRLSALQTQQQL  431 (452)
Q Consensus       407 ~s~i~D~D~A~e~t~l~~~q~~~Qa  431 (452)
                      ...-.|.||+.+.+.|...-.++++
T Consensus        20 ~~~~~d~dy~~a~a~La~A~AqL~~   44 (50)
T d1aqta1          20 SSSHGDVDYAQASAELAKAIAQLRV   44 (50)
T ss_dssp             TTCSSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             7476403499999999999999999


No 8  
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=4.94  E-value=71  Score=7.91  Aligned_cols=16  Identities=25%  Similarity=0.281  Sum_probs=6.1

Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             6788999999999998
Q gi|254780531|r  107 SIQSEITQLQSQLRDI  122 (452)
Q Consensus       107 a~~~e~~~l~~~i~~i  122 (452)
                      ....=+.+.+.+|.++
T Consensus        84 ~Rr~fi~~~~~~I~~~   99 (106)
T d1lvfa_          84 IRKAFITSTRQIVRDM   99 (106)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             9999999999999999


No 9  
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.87  E-value=73  Score=7.86  Aligned_cols=50  Identities=4%  Similarity=0.119  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999987530377630356788999999999998
Q gi|254780531|r   71 SSKVDIAKAGMSKAIDVMSTIKNKITAGVERGTDSKSIQSEITQLQSQLRDI  122 (452)
Q Consensus        71 ~~~l~~ae~~l~~~~~~l~r~relavqa~n~~~dr~a~~~e~~~l~~~i~~i  122 (452)
                      ...+.-.|..|+++..+|..|.-=+-..  .+..|..+..-+...+.+|..+
T Consensus        30 k~~l~~ie~~leEA~ell~qMelEvr~~--p~s~R~~~~~klr~Yk~dl~~l   79 (89)
T d1vcsa1          30 KQMVANVEKQLEEARELLEQMDLEVREI--PPQSRGMYSNRMRSYKQEMGKL   79 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTS--CTTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8999999976899999999999998749--8777999999999999999999


No 10 
>d1pzqa_ a.34.3.1 (A:) Erythronolide synthase {Saccharopolyspora erythraea [TaxId: 1836]}
Probab=4.82  E-value=74  Score=7.83  Aligned_cols=30  Identities=7%  Similarity=0.240  Sum_probs=0.0

Q ss_pred             CHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Q ss_conf             0578999999999999999--99987899999
Q gi|254780531|r  360 AMEEMVSFIDTQIKCATAA--AGKIGSISSRI  389 (452)
Q Consensus       360 ~~~~al~~id~a~~~v~~~--ra~iGa~~nrl  389 (452)
                      ++..-++.++.|++.+...  .+++|+|+..|
T Consensus         9 ~ig~rld~le~al~al~~~~gh~dvg~rle~l   40 (60)
T d1pzqa_           9 DIGDRLDELEKALEALSAEDGHDDVGQRLESL   40 (60)
T ss_dssp             TTHHHHHHHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHH
T ss_conf             62365889999998365210410799999999


Done!