PSIBLAST alignment of GI: 254780531 and protein with PDB id: 1io1

>gi|13786773|pdb|1IO1|A Chain A, Crystal Structure Of F41 Fragment Of Flagellin Length = 398

 Score = 92.5 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/398 (8%), Positives = 83/398 (20%), Gaps = 43/398 (10%)

Query: 53  MKSDNGALSAVSDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITAGVERGTDS---KSIQ 109
             ++   L+  S     G S     +  +++  + +  ++                 SIQ
Sbjct: 1   FTANIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQ 60

Query: 110 SEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDNGKVQITTIDYY 169
           +EITQ  +++  ++  + FNG   L  D   +    A       I       Q   +D  
Sbjct: 61  AEITQRLNEIDRVSGQTQFNGVKVLAQDNTLTIQVGANDGETIDIDLKQINSQTLGLDTL 120

Query: 170 LDPETVLLDSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTKKFKLATTSG 229
              +   +  +      Y                  +  +     G +          + 
Sbjct: 121 NVQQKYKVSDTAATVTGYADTTIALDNSTFKASATGLGGTDQKIDGDLKFDDTTGKYYAK 180

Query: 230 AWLKAANATFDQAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSDIWV 289
             +          +                 +        + +       +   +     
Sbjct: 181 VTVTGGTGKDGYYEVSVDKTNGEVTLAGGATSPLTGGLPATATEDVKNVQVANADLTEAK 240

Query: 290 RATTKNSITSDPGYTNSTVAKVGNTHYYVDTESTTLDSRKDLPKEIDSGYSMVTLNITRH 349
            A T   +T        +                  D      +  D   S+ T   T  
Sbjct: 241 AALTAAGVTGTASVVKMSYTDNNGKTIDGGLAVKVGDDYYSATQNKDGSISINTTKYTAD 300

Query: 350 ANTDAY----------------------------------------NEKLAMEEMVSFID 369
             T                                                 E  +  ID
Sbjct: 301 DGTSKTALNKLGGADGKTEVVSIGGKTYAASKAEGHNFKAQPDLAEAAATTTENPLQKID 360

Query: 370 TQIKCATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGV 407
             +         + ++ +R +     +    + +    
Sbjct: 361 AALAQVDTLRSDLAAVQNRFNSAITNLGNTVNNLTSAR 398