RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780531|ref|YP_003064944.1| flagellin domain-containing protein [Candidatus Liberibacter asiaticus str. psy62] (452 letters) >gnl|CDD|31535 COG1344, FlgL, Flagellin and related hook-associated proteins [Cell motility and secretion]. Length = 360 Score = 103 bits (257), Expect = 1e-22 Identities = 60/254 (23%), Positives = 96/254 (37%), Gaps = 8/254 (3%) Query: 2 TSILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALS 61 I TN +A++A + L L Q+R+SSGLR++ A+D+AA +IA ++S LS Sbjct: 1 MRINTNMAALNALRNLNKNQSELAKSQERLSSGLRINSASDDAAGLAIALRLRSQIRGLS 60 Query: 62 AVSDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITA---GVERGTDSKSIQSEITQLQSQ 118 D G SK+ A+ +S+ ++ IK G D +IQ EI QL + Sbjct: 61 QAKDNAQDGISKLQTAEGALSEISKILQRIKELAVQAANGTLSDADRAAIQKEIEQLLDE 120 Query: 119 LRDIARGSSFNGENWLRTDLGSSTASIA----KSVIGSFIRDDNGKVQITTIDYYLDPET 174 L +IA +SFNGE +++ GSF D +G V + + Sbjct: 121 LDNIANTTSFNGEYLFAGSKTDKPFDFQNAGGETIKGSFNSDSSGTVSVGLDITNTGDLS 180 Query: 175 VLLDSSTDGTERYGLLDRNHKIKVEPQVLK-DIDVSVYDASGTISTKKFKLATTSGAWLK 233 +T E D D + + +T ++ G Sbjct: 181 FTSLGTTAKDEPIDAGDVTAGPTNLFGAGANAADGASLGKALDAATTNTQIGANVGQTTT 240 Query: 234 AANATFDQAKGIAT 247 + A Sbjct: 241 LNINDGNVMTASAA 254 Score = 74.0 bits (181), Expect = 8e-14 Identities = 34/163 (20%), Positives = 62/163 (38%) Query: 289 VRATTKNSITSDPGYTNSTVAKVGNTHYYVDTESTTLDSRKDLPKEIDSGYSMVTLNITR 348 V A N + + +T+ + D + Sbjct: 198 VTAGPTNLFGAGANAADGASLGKALDAATTNTQIGANVGQTTTLNINDGNVMTASAAGAL 257 Query: 349 HANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVG 408 + + + ID+ + T+A ++G++ +R+ + + D + Sbjct: 258 ADPGSSVATADGAQAALGTIDSALDNITSARAELGAVQNRLESAINNLSNQSDNLTAAES 317 Query: 409 RLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR 451 R+VD DMA EST L+ LQ QQ ++QAL+ N + +LSL R Sbjct: 318 RIVDVDMAEESTELTKLQILQQASLQALAQANQLSLLVLSLLR 360 >gnl|CDD|144315 pfam00669, Flagellin_N, Bacterial flagellin N-terminal helical region. Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700. Length = 139 Score = 89.7 bits (223), Expect = 2e-18 Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 3/134 (2%) Query: 4 ILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAV 63 I TN A++A + L L+ Q+ +S+GLR+ A D A +I+ ++S LS Sbjct: 1 ISTNALALAARRTLNRNQAELQKAQEELSTGLRIDSALDLGAGTAISVSLRSQIRGLSQA 60 Query: 64 SDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITAGVERGTDS---KSIQSEITQLQSQLR 120 LG S++ A+ +S+ D++ ++ G S Q+EI QL S+L Sbjct: 61 VRNNNLGISRLQTAQGALSEVTDILQRLRELAVQAANGGNSDIDRASAQAEIQQLTSELN 120 Query: 121 DIARGSSFNGENWL 134 +IA +SFNGE Sbjct: 121 NIANTTSFNGEYLF 134 >gnl|CDD|144340 pfam00700, Flagellin_C, Bacterial flagellin C-terminal helical region. Flagellins polymerize to form bacterial flagella. There is some similarity between this family and pfam00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate and this is shown to be correct as structurally this family forms an extended helix that interacts with pfam00700. Length = 84 Score = 53.4 bits (129), Expect = 1e-07 Identities = 18/74 (24%), Positives = 34/74 (45%) Query: 368 IDTQIKCATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLSALQT 427 +D I T+ +G++ +R+ +K D ++ + R+ D D A STR++ LQ Sbjct: 4 LDEAITQLTSQRSDLGAVQNRLESANTNLKNQSDNLKAAISRIEDVDPAEASTRVTKLQI 63 Query: 428 QQQLAVQALSIVNN 441 Q + + N Sbjct: 64 LLQASYALTAQANQ 77 >gnl|CDD|33063 COG3252, COG3252, Methenyltetrahydromethanopterin cyclohydrolase [Coenzyme metabolism]. Length = 314 Score = 33.0 bits (75), Expect = 0.17 Identities = 14/54 (25%), Positives = 20/54 (37%) Query: 302 GYTNSTVAKVGNTHYYVDTESTTLDSRKDLPKEIDSGYSMVTLNITRHANTDAY 355 G TN V G + V +E D K +P Y + + A+ D Y Sbjct: 222 GRTNDAVLYGGRVYLTVKSEDELEDLVKAVPSSASEDYGKPFYEVFKAADYDFY 275 >gnl|CDD|111207 pfam02289, MCH, Cyclohydrolase (MCH). Methenyl tetrahydromethanopterin cyclohydrolase EC:3.5.4.27 is involved in methanogenesis in bacteria and archaea, producing methane from carbon monoxide or carbon dioxide. Length = 312 Score = 27.8 bits (62), Expect = 5.7 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 1/55 (1%) Query: 302 GYTNSTVAKVGNTHYYVDTESTTLDS-RKDLPKEIDSGYSMVTLNITRHANTDAY 355 G TN V G + YV ++ L ++LP Y I + AN D Y Sbjct: 221 GRTNDAVLYGGRVYLYVKSDDADLKELAENLPSTTSEDYGKPFYEIFKEANYDFY 275 >gnl|CDD|30844 COG0498, ThrC, Threonine synthase [Amino acid transport and metabolism]. Length = 411 Score = 28.0 bits (62), Expect = 6.0 Identities = 12/40 (30%), Positives = 16/40 (40%) Query: 203 LKDIDVSVYDASGTISTKKFKLATTSGAWLKAANATFDQA 242 + V V G +S K T GA + A + FD A Sbjct: 147 RAGLKVFVLYPKGKVSPGKLAQMLTLGAHVIAVDGNFDDA 186 >gnl|CDD|38419 KOG3209, KOG3209, KOG3209, WW domain-containing protein [General function prediction only]. Length = 984 Score = 27.7 bits (61), Expect = 6.3 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%) Query: 404 EKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR 451 E G+GR+++ A +L + LAV SI+N S A I+SL + Sbjct: 779 ESGIGRIIEGSPADRCGKLKV--GDRILAVNGQSILNLSHADIVSLIK 824 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.311 0.125 0.336 Gapped Lambda K H 0.267 0.0700 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 4,612,952 Number of extensions: 226114 Number of successful extensions: 468 Number of sequences better than 10.0: 1 Number of HSP's gapped: 464 Number of HSP's successfully gapped: 16 Length of query: 452 Length of database: 6,263,737 Length adjustment: 97 Effective length of query: 355 Effective length of database: 4,167,664 Effective search space: 1479520720 Effective search space used: 1479520720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 59 (26.6 bits)