RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780531|ref|YP_003064944.1| flagellin domain-containing
protein [Candidatus Liberibacter asiaticus str. psy62]
         (452 letters)



>gnl|CDD|31535 COG1344, FlgL, Flagellin and related hook-associated proteins [Cell
           motility and secretion].
          Length = 360

 Score =  103 bits (257), Expect = 1e-22
 Identities = 60/254 (23%), Positives = 96/254 (37%), Gaps = 8/254 (3%)

Query: 2   TSILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALS 61
             I TN +A++A + L      L   Q+R+SSGLR++ A+D+AA  +IA  ++S    LS
Sbjct: 1   MRINTNMAALNALRNLNKNQSELAKSQERLSSGLRINSASDDAAGLAIALRLRSQIRGLS 60

Query: 62  AVSDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITA---GVERGTDSKSIQSEITQLQSQ 118
              D    G SK+  A+  +S+   ++  IK        G     D  +IQ EI QL  +
Sbjct: 61  QAKDNAQDGISKLQTAEGALSEISKILQRIKELAVQAANGTLSDADRAAIQKEIEQLLDE 120

Query: 119 LRDIARGSSFNGENWLRTDLGSSTASIA----KSVIGSFIRDDNGKVQITTIDYYLDPET 174
           L +IA  +SFNGE                   +++ GSF  D +G V +          +
Sbjct: 121 LDNIANTTSFNGEYLFAGSKTDKPFDFQNAGGETIKGSFNSDSSGTVSVGLDITNTGDLS 180

Query: 175 VLLDSSTDGTERYGLLDRNHKIKVEPQVLK-DIDVSVYDASGTISTKKFKLATTSGAWLK 233
                +T   E     D                D +    +   +T   ++    G    
Sbjct: 181 FTSLGTTAKDEPIDAGDVTAGPTNLFGAGANAADGASLGKALDAATTNTQIGANVGQTTT 240

Query: 234 AANATFDQAKGIAT 247
                 +     A 
Sbjct: 241 LNINDGNVMTASAA 254



 Score = 74.0 bits (181), Expect = 8e-14
 Identities = 34/163 (20%), Positives = 62/163 (38%)

Query: 289 VRATTKNSITSDPGYTNSTVAKVGNTHYYVDTESTTLDSRKDLPKEIDSGYSMVTLNITR 348
           V A   N   +     +             +T+      +       D      +     
Sbjct: 198 VTAGPTNLFGAGANAADGASLGKALDAATTNTQIGANVGQTTTLNINDGNVMTASAAGAL 257

Query: 349 HANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVG 408
                +       +  +  ID+ +   T+A  ++G++ +R+    + +    D +     
Sbjct: 258 ADPGSSVATADGAQAALGTIDSALDNITSARAELGAVQNRLESAINNLSNQSDNLTAAES 317

Query: 409 RLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR 451
           R+VD DMA EST L+ LQ  QQ ++QAL+  N  +  +LSL R
Sbjct: 318 RIVDVDMAEESTELTKLQILQQASLQALAQANQLSLLVLSLLR 360


>gnl|CDD|144315 pfam00669, Flagellin_N, Bacterial flagellin N-terminal helical
           region.  Flagellins polymerize to form bacterial
           flagella. This family includes flagellins and hook
           associated protein 3. Structurally this family forms an
           extended helix that interacts with pfam00700.
          Length = 139

 Score = 89.7 bits (223), Expect = 2e-18
 Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 3/134 (2%)

Query: 4   ILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAV 63
           I TN  A++A + L      L+  Q+ +S+GLR+  A D  A  +I+  ++S    LS  
Sbjct: 1   ISTNALALAARRTLNRNQAELQKAQEELSTGLRIDSALDLGAGTAISVSLRSQIRGLSQA 60

Query: 64  SDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITAGVERGTDS---KSIQSEITQLQSQLR 120
                LG S++  A+  +S+  D++  ++         G       S Q+EI QL S+L 
Sbjct: 61  VRNNNLGISRLQTAQGALSEVTDILQRLRELAVQAANGGNSDIDRASAQAEIQQLTSELN 120

Query: 121 DIARGSSFNGENWL 134
           +IA  +SFNGE   
Sbjct: 121 NIANTTSFNGEYLF 134


>gnl|CDD|144340 pfam00700, Flagellin_C, Bacterial flagellin C-terminal helical
           region.  Flagellins polymerize to form bacterial
           flagella. There is some similarity between this family
           and pfam00669, particularly the motif NRFXSXIXXL. It has
           been suggested that these two regions associate and this
           is shown to be correct as structurally this family forms
           an extended helix that interacts with pfam00700.
          Length = 84

 Score = 53.4 bits (129), Expect = 1e-07
 Identities = 18/74 (24%), Positives = 34/74 (45%)

Query: 368 IDTQIKCATAAAGKIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLSALQT 427
           +D  I   T+    +G++ +R+      +K   D ++  + R+ D D A  STR++ LQ 
Sbjct: 4   LDEAITQLTSQRSDLGAVQNRLESANTNLKNQSDNLKAAISRIEDVDPAEASTRVTKLQI 63

Query: 428 QQQLAVQALSIVNN 441
             Q +    +  N 
Sbjct: 64  LLQASYALTAQANQ 77


>gnl|CDD|33063 COG3252, COG3252, Methenyltetrahydromethanopterin cyclohydrolase
           [Coenzyme metabolism].
          Length = 314

 Score = 33.0 bits (75), Expect = 0.17
 Identities = 14/54 (25%), Positives = 20/54 (37%)

Query: 302 GYTNSTVAKVGNTHYYVDTESTTLDSRKDLPKEIDSGYSMVTLNITRHANTDAY 355
           G TN  V   G  +  V +E    D  K +P      Y      + + A+ D Y
Sbjct: 222 GRTNDAVLYGGRVYLTVKSEDELEDLVKAVPSSASEDYGKPFYEVFKAADYDFY 275


>gnl|CDD|111207 pfam02289, MCH, Cyclohydrolase (MCH).  Methenyl
           tetrahydromethanopterin cyclohydrolase EC:3.5.4.27 is
           involved in methanogenesis in bacteria and archaea,
           producing methane from carbon monoxide or carbon
           dioxide.
          Length = 312

 Score = 27.8 bits (62), Expect = 5.7
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 302 GYTNSTVAKVGNTHYYVDTESTTLDS-RKDLPKEIDSGYSMVTLNITRHANTDAY 355
           G TN  V   G  + YV ++   L    ++LP      Y      I + AN D Y
Sbjct: 221 GRTNDAVLYGGRVYLYVKSDDADLKELAENLPSTTSEDYGKPFYEIFKEANYDFY 275


>gnl|CDD|30844 COG0498, ThrC, Threonine synthase [Amino acid transport and
           metabolism].
          Length = 411

 Score = 28.0 bits (62), Expect = 6.0
 Identities = 12/40 (30%), Positives = 16/40 (40%)

Query: 203 LKDIDVSVYDASGTISTKKFKLATTSGAWLKAANATFDQA 242
              + V V    G +S  K     T GA + A +  FD A
Sbjct: 147 RAGLKVFVLYPKGKVSPGKLAQMLTLGAHVIAVDGNFDDA 186


>gnl|CDD|38419 KOG3209, KOG3209, KOG3209, WW domain-containing protein [General
           function prediction only].
          Length = 984

 Score = 27.7 bits (61), Expect = 6.3
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 404 EKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR 451
           E G+GR+++   A    +L      + LAV   SI+N S A I+SL +
Sbjct: 779 ESGIGRIIEGSPADRCGKLKV--GDRILAVNGQSILNLSHADIVSLIK 824


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.311    0.125    0.336 

Gapped
Lambda     K      H
   0.267   0.0700    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,612,952
Number of extensions: 226114
Number of successful extensions: 468
Number of sequences better than 10.0: 1
Number of HSP's gapped: 464
Number of HSP's successfully gapped: 16
Length of query: 452
Length of database: 6,263,737
Length adjustment: 97
Effective length of query: 355
Effective length of database: 4,167,664
Effective search space: 1479520720
Effective search space used: 1479520720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (26.6 bits)