RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780531|ref|YP_003064944.1| flagellin domain-containing protein [Candidatus Liberibacter asiaticus str. psy62] (452 letters) >1ucu_A Phase 1 flagellin; flagellar filament, cryo-electron microscopy, helical reconstruction, structural protein; 4.00A {Salmonella typhimurium} (A:41-169,A:400-454) Length = 184 Score = 62.2 bits (151), Expect = 1e-10 Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 3/96 (3%) Query: 42 DNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITA---G 98 D+AA +IA ++ L+ S G S + +++ + + ++ Sbjct: 2 DDAAGQAIANRFTANIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANS 61 Query: 99 VERGTDSKSIQSEITQLQSQLRDIARGSSFNGENWL 134 +D SIQ+EITQ +++ ++ + FNG L Sbjct: 62 TNSQSDLDSIQAEITQRLNEIDRVSGQTQFNGVKVL 97 >2d4x_A Flagellar HOOK-associated protein 3; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 1.90A {Salmonella typhimurium} (A:) Length = 248 Score = 55.1 bits (131), Expect = 2e-08 Identities = 28/231 (12%), Positives = 67/231 (29%), Gaps = 3/231 (1%) Query: 41 ADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITA--- 97 +D+ S A ++ S + A + KV + ++ +S+ + T + KI Sbjct: 2 SDDPIAASQAVVLSQAQAQNSQYALARTFATQKVSLEESVLSQVTTAIQTAQEKIVYAGN 61 Query: 98 GVERGTDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDD 157 G D S+ +++ ++ QL ++A + NG + + Sbjct: 62 GTLSDDDRASLATDLQGIRDQLMNLANSTDGNGRYIFAGYKTEAAPFDQATGGYHGGEKS 121 Query: 158 NGKVQITTIDYYLDPETVLLDSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTI 217 + + + + +S + + + + I G Sbjct: 122 VTQQVDSARTMVIGHTGAQIFNSITSNAVPEPDGSDSEKNLFVMLDTAIAALKTPVEGNN 181 Query: 218 STKKFKLATTSGAWLKAANATFDQAKGIATIPVPLPAAPAAPNTTSGTSGS 268 K+ A N+ + A + L + S + Sbjct: 182 VEKEKAAAAIDKTNRGLKNSLNNVLTVRAELGTQLSELSTLDSLGSDRALG 232 Score = 31.6 bits (70), Expect = 0.21 Identities = 9/79 (11%), Positives = 22/79 (27%) Query: 339 YSMVTLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKL 398 N + A+++ + + ++G+ S + + Sbjct: 169 AIAALKTPVEGNNVEKEKAAAAIDKTNRGLKNSLNNVLTVRAELGTQLSELSTLDSLGSD 228 Query: 399 MRDAVEKGVGRLVDADMAS 417 + + LVD D S Sbjct: 229 RALGQKLQMSNLVDVDWNS 247 >1io1_A Phase 1 flagellin; beta-folium, structural protein; 2.00A {Salmonella typhimurium} (A:1-117,A:348-398) Length = 168 Score = 54.8 bits (132), Expect = 2e-08 Identities = 20/119 (16%), Positives = 43/119 (36%), Gaps = 12/119 (10%) Query: 53 MKSDNGALSAVSDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITA---GVERGTDSKSIQ 109 ++ L+ S G S + +++ + + ++ +D SIQ Sbjct: 1 FTANIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQ 60 Query: 110 SEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDNGKVQITTIDY 168 +EITQ +++ ++ + FNG L +T +I +D + I Sbjct: 61 AEITQRLNEIDRVSGQTQFNGVKVLA---QDNTLTIQ------VGANDGETIDIDLKQI 110 >2zbi_A Flagellin homolog; flagellum, structural protein; 2.00A {Sphingomonas SP} (A:1-113,A:232-292) Length = 174 Score = 54.1 bits (130), Expect = 4e-08 Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 12/116 (10%) Query: 55 SDNGALSAVSDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITA---GVERGTDSKSIQSE 111 + L+ G S A+ + + + + I+ G TD ++Q+E Sbjct: 2 AQIKGLTQAQRNANDGISLAQTAEGALGEISNNLQRIRELAVQASNGTNTQTDRDALQAE 61 Query: 112 ITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDNGKVQITTID 167 +TQLQS+++ +A +SFNG+ L I + G+ + Sbjct: 62 VTQLQSEIQRVAEQTSFNGQKLLDGSFNGVQF---------QIGANAGETIGVSKI 108 >1ory_B Flagellin; flagellar chaperone, cytosolic export chaperone, FLIS, FLIC; 2.45A {Aquifex aeolicus} (B:) Length = 55 Score = 34.6 bits (80), Expect = 0.025 Identities = 12/44 (27%), Positives = 18/44 (40%) Query: 408 GRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR 451 + + D A E T + Q + Q V L+ N +L L R Sbjct: 12 SIIRNVDFAKEMTEFTKYQIRMQSGVAMLAQANALPQLVLQLLR 55 >1ucu_A Phase 1 flagellin; flagellar filament, cryo-electron microscopy, helical reconstruction, structural protein; 4.00A {Salmonella typhimurium} (A:1-40,A:455-494) Length = 80 Score = 33.8 bits (78), Expect = 0.050 Identities = 14/40 (35%), Positives = 20/40 (50%) Query: 412 DADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR 451 D+D A+E + +S Q QQ L+ N +LSL R Sbjct: 41 DSDYATEVSNMSRAQILQQAGTSVLAQANQVPQNVLSLLR 80 Score = 28.0 bits (63), Expect = 2.7 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 3 SILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDA-ADNAA 45 I TN ++ L L +R+SSGLR++ A +D A Sbjct: 3 VINTNSLSLLTQNNLNKSQSALGTAIERLSSGLRINSADSDYAT 46 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688) Length = 258 Score = 31.4 bits (71), Expect = 0.23 Identities = 14/85 (16%), Positives = 25/85 (29%), Gaps = 27/85 (31%) Query: 4 ILTN----HSAMSASQKLRDINY------------------NLEVVQDRVSSGLRVSDAA 41 ILT HS++ + ++ Y LE ++ + D Sbjct: 6 ILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEAEE-IPSEDQN 64 Query: 42 DNAAYWSIAQIMKSDNGALSAVSDA 66 + +I N A S + A Sbjct: 65 EFLLER-TREI---HNEAESQLRAA 85 >1pov_0 Poliovirus native empty capsid (type 1); picornavirus, icosahedral virus; HET: MYR SPH; 2.80A {Human poliovirus 1 mahoney} (0:50-340) Length = 291 Score = 29.9 bits (67), Expect = 0.60 Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 1/108 (0%) Query: 261 TTSGTSG-SKSPSVAASATYIRMGNSDIWVRATTKNSITSDPGYTNSTVAKVGNTHYYVD 319 T K+ + S G SD ++ T NS + NS VA Y D Sbjct: 4 TEPIKDVLIKTAPMLNSPNIEACGYSDRVLQLTLGNSTITTQEAANSVVAYGRWPEYLRD 63 Query: 320 TESTTLDSRKDLPKEIDSGYSMVTLNITRHANTDAYNEKLAMEEMVSF 367 +E+ +D + Y++ T++ T+ + + A+ +M F Sbjct: 64 SEANPVDQPTEPDVAACRFYTLDTVSWTKESRGWWWKLPDALRDMGLF 111 >3ele_A Amino transferase; RER070207001803, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE PLP; 2.10A {Eubacterium rectale} (A:16-46,A:303-398) Length = 127 Score = 28.2 bits (63), Expect = 2.3 Identities = 5/37 (13%), Positives = 8/37 (21%), Gaps = 2/37 (5%) Query: 122 IARGSSFNGENWLRTDLGSSTASI--AKSVIGSFIRD 156 I F W+R I + + Sbjct: 88 IVAADGFGCPGWVRISYCVDREXIKHSXPAFEKIYKK 124 >3er9_B Poly(A) polymerase catalytic subunit; polyadenylate polymerase, translocation, single tranded RNA poly(A) polymerase, RNA protein complex, processivity, heterodimer; HET: 3AT; 2.06A {Vaccinia virus WR} PDB: 3er8_C* 3erc_C* 2ga9_D* 2gaf_D (B:1-120) Length = 120 Score = 28.3 bits (63), Expect = 2.3 Identities = 21/106 (19%), Positives = 47/106 (44%), Gaps = 15/106 (14%) Query: 89 STIKNKITAGVERGTDSKSIQSEITQLQSQLRDIARGSSFNGENWLR----------TDL 138 +T+ N +E +E L+SQ R+I + + FN + ++ +D+ Sbjct: 8 NTLPNITLKIIETYLGRVPSVNEYHMLKSQARNIQKITVFNKDIFVSLVKKNKKRFFSDV 67 Query: 139 GSSTASIAKSVIGSFIRDDNGKV--QITTIDYYLDPETVLLDSSTD 182 +S + I ++ F + ++ TI ++ ++VL+ + TD Sbjct: 68 NTSASEIKDRILSYFSKQTQTYNIGKLFTI---IELQSVLVTTYTD 110 >1igw_A Isocitrate lyase; beta barrel; 2.10A {Escherichia coli} (A:) Length = 434 Score = 27.2 bits (59), Expect = 4.4 Identities = 17/100 (17%), Positives = 28/100 (28%), Gaps = 10/100 (10%) Query: 1 MTSILTNHSAMSASQKLRDIN-YNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGA 59 ++ A A+ D + Y V V AD ++ G Sbjct: 90 LSGWQVAADANLAASMYPDQSLYPANSVPAVVERINNTFRRAD---------QIQWSAGI 140 Query: 60 LSAVSDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITAGV 99 + V A+AG ++ +K I AG Sbjct: 141 EPGDPRYVDYFLPIVADAEAGFGGVLNAFELMKAMIEAGA 180 >3hrq_A PKS, aflatoxin biosynthesis polyketide synthase; hot-DOG fold, iterative type I PKS, norsolorinic acid, product template domain; HET: PLM; 1.80A {Aspergillus parasiticus} PDB: 3hrr_A* (A:) Length = 357 Score = 27.0 bits (58), Expect = 4.9 Identities = 7/57 (12%), Positives = 13/57 (22%), Gaps = 4/57 (7%) Query: 207 DVSVYDASGT--ISTKKFKLATTSGAWLKAANATFDQAK--GIATIPVPLPAAPAAP 259 V + L + L+ T + + +P P P Sbjct: 300 GDVVVLDGEQIVAFFRGLTLRSVPRGALRVVLQTTVKKADRQLGFKTMPSPPPPTTT 356 >1sj8_A Talin 1; structural protein; 2.60A {Mus musculus} (A:1-178) Length = 178 Score = 26.7 bits (59), Expect = 7.0 Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 3/58 (5%) Query: 71 SSKVDIAKAGMSKAIDVMSTIKNKI---TAGVERGTDSKSIQSEITQLQSQLRDIARG 125 +K+D +K + +D ++ + TAG TD ++ +T + S L +++RG Sbjct: 52 KNKMDESKHEIHSQVDAITAGTASVVNLTAGDPAETDYTAVGCAVTTISSNLTEMSRG 109 >1sj7_A Talin 1; structural protein; 2.50A {Mus musculus} (A:) Length = 174 Score = 26.3 bits (58), Expect = 7.3 Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 3/58 (5%) Query: 71 SSKVDIAKAGMSKAIDVMSTIKNKI---TAGVERGTDSKSIQSEITQLQSQLRDIARG 125 +K+D +K + +D ++ + TAG TD ++ +T + S L +++RG Sbjct: 52 KNKMDESKHEIHSQVDAITAGTASVVNLTAGDPAETDYTAVGCAVTTISSNLTEMSRG 109 >3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta fold and the C-terminal all beta domain., structural genomics, PSI-2; 2.00A {Nostoc SP} (A:298-374) Length = 77 Score = 26.2 bits (58), Expect = 8.9 Identities = 9/66 (13%), Positives = 18/66 (27%), Gaps = 7/66 (10%) Query: 191 DRNHKIKVE-PQVLK-DIDVSVYDASGTISTKKFKLATTSGAWL---KAANATFDQAKGI 245 N ++++ P K + ++ Y T+ + L A F Sbjct: 7 THNRQVRLFLPGFDKKQVKLTQYGPEVTVEAGDQRRNIFLPPALSGRPITGAKFQN--NY 64 Query: 246 ATIPVP 251 I Sbjct: 65 LIISFL 70 >3id6_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA-binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} (A:1-103) Length = 103 Score = 26.2 bits (58), Expect = 9.1 Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 12/68 (17%) Query: 145 IAKSVIGSFIRDDNGKVQITTIDYYLDPETVLLDSSTDGTERYGLLDRNHKIKVEPQVLK 204 + + VIG+ D+NG + +DY +P L T+ L N K ++ Sbjct: 6 LIEHVIGAVAYDENGNI----VDYITNPRD--LGKITEE------LLNNEKGIPFSATVE 53 Query: 205 DIDVSVYD 212 + Sbjct: 54 LLKKVNPQ 61 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.311 0.125 0.336 Gapped Lambda K H 0.267 0.0700 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,958,641 Number of extensions: 124568 Number of successful extensions: 276 Number of sequences better than 10.0: 1 Number of HSP's gapped: 275 Number of HSP's successfully gapped: 22 Length of query: 452 Length of database: 4,956,049 Length adjustment: 91 Effective length of query: 361 Effective length of database: 1,879,794 Effective search space: 678605634 Effective search space used: 678605634 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 56 (25.4 bits)