RPSBLAST alignment of GI: 254780531 and protein with PDBid: 1ucu
>1ucu_A Phase 1 flagellin; flagellar filament, cryo-electron microscopy, helical reconstruction, structural protein; 4.00A {Salmonella typhimurium} SCOP: e.32.1.1 Length = 494
Score = 112 bits (280), Expect = 2e-25
Identities = 75/491 (15%), Positives = 152/491 (30%), Gaps = 43/491 (8%)
Query: 4 ILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAV 63
I TN ++ L L +R+SSGLR++ A D+AA +IA ++ L+
Sbjct: 4 INTNSLSLLTQNNLNKSQSALGTAIERLSSGLRINSAKDDAAGQAIANRFTANIKGLTQA 63
Query: 64 SDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITA---GVERGTDSKSIQSEITQLQSQLR 120
S G S + +++ + + ++ +D SIQ+EITQ +++
Sbjct: 64 SRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEID 123
Query: 121 DIARGSSFNGENWLRTDLG---SSTASIAKSVIGSFIRDDNGKVQITTIDYYLDPETVLL 177
++ + FNG L D A+ +++ + ++ + + T++ +
Sbjct: 124 RVSGQTQFNGVKVLAQDNTLTIQVGANDGETIDIDLKQINSQTLGLDTLNVQQKYKVSDT 183
Query: 178 DSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTKKFKLATTSGAWLKAANA 237
++ G + N K L D + T A + +
Sbjct: 184 AATVTGYADTTIALDNSTFKASATGLGGTDQKIDGDLKFDDTTGKYYAKVTVTGGTGKDG 243
Query: 238 TFDQAKGIATIPVPLPAAPAAPNTTSG--------------------------------- 264
++ + V L +P T
Sbjct: 244 YYEVSVDKTNGEVTLAGGATSPLTGGLPATATEDVKNVQVANADLTEAKAALTAAGVTGT 303
Query: 265 TSGSKSPSVAASATYIRMGNSDIWVRATTKNSITSDPGYTNSTVAKVGNTHYYVDTESTT 324
S K + I G + + D + +T + +
Sbjct: 304 ASVVKMSYTDNNGKTIDGGLAVKVGDDYYSATQNKDGSISINTTKYTADDGTSKTALNKL 363
Query: 325 LDSRKDLPKEIDSGYSM----VTLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAG 380
+ G + + + A E + ID +
Sbjct: 364 GGADGKTEVVSIGGKTYAASKAEGHNFKAQPDLAEAAATTTENPLQKIDAALAQVDTLRS 423
Query: 381 KIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVN 440
+G++ +R + + + + R+ D+D A+E + +S Q QQ L+ N
Sbjct: 424 DLGAVQNRFNSAITNLGNTVNNLTSVRSRIEDSDYATEVSNMSRAQILQQAGTSVLAQAN 483
Query: 441 NSTARILSLFR 451
+LSL R
Sbjct: 484 QVPQNVLSLLR 494