RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780531|ref|YP_003064944.1| flagellin domain-containing
protein [Candidatus Liberibacter asiaticus str. psy62]
(452 letters)
>1ucu_A Phase 1 flagellin; flagellar filament, cryo-electron microscopy,
helical reconstruction, structural protein; 4.00A
{Salmonella typhimurium} SCOP: e.32.1.1
Length = 494
Score = 112 bits (280), Expect = 2e-25
Identities = 75/491 (15%), Positives = 152/491 (30%), Gaps = 43/491 (8%)
Query: 4 ILTNHSAMSASQKLRDINYNLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAV 63
I TN ++ L L +R+SSGLR++ A D+AA +IA ++ L+
Sbjct: 4 INTNSLSLLTQNNLNKSQSALGTAIERLSSGLRINSAKDDAAGQAIANRFTANIKGLTQA 63
Query: 64 SDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITA---GVERGTDSKSIQSEITQLQSQLR 120
S G S + +++ + + ++ +D SIQ+EITQ +++
Sbjct: 64 SRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEID 123
Query: 121 DIARGSSFNGENWLRTDLG---SSTASIAKSVIGSFIRDDNGKVQITTIDYYLDPETVLL 177
++ + FNG L D A+ +++ + ++ + + T++ +
Sbjct: 124 RVSGQTQFNGVKVLAQDNTLTIQVGANDGETIDIDLKQINSQTLGLDTLNVQQKYKVSDT 183
Query: 178 DSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTKKFKLATTSGAWLKAANA 237
++ G + N K L D + T A + +
Sbjct: 184 AATVTGYADTTIALDNSTFKASATGLGGTDQKIDGDLKFDDTTGKYYAKVTVTGGTGKDG 243
Query: 238 TFDQAKGIATIPVPLPAAPAAPNTTSG--------------------------------- 264
++ + V L +P T
Sbjct: 244 YYEVSVDKTNGEVTLAGGATSPLTGGLPATATEDVKNVQVANADLTEAKAALTAAGVTGT 303
Query: 265 TSGSKSPSVAASATYIRMGNSDIWVRATTKNSITSDPGYTNSTVAKVGNTHYYVDTESTT 324
S K + I G + + D + +T + +
Sbjct: 304 ASVVKMSYTDNNGKTIDGGLAVKVGDDYYSATQNKDGSISINTTKYTADDGTSKTALNKL 363
Query: 325 LDSRKDLPKEIDSGYSM----VTLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAG 380
+ G + + + A E + ID +
Sbjct: 364 GGADGKTEVVSIGGKTYAASKAEGHNFKAQPDLAEAAATTTENPLQKIDAALAQVDTLRS 423
Query: 381 KIGSISSRIHLQEDFIKLMRDAVEKGVGRLVDADMASESTRLSALQTQQQLAVQALSIVN 440
+G++ +R + + + + R+ D+D A+E + +S Q QQ L+ N
Sbjct: 424 DLGAVQNRFNSAITNLGNTVNNLTSVRSRIEDSDYATEVSNMSRAQILQQAGTSVLAQAN 483
Query: 441 NSTARILSLFR 451
+LSL R
Sbjct: 484 QVPQNVLSLLR 494
>3k8w_A Flagellin homolog; flagellum, structural protein, bacterial
flagellu; 1.70A {Sphingomonas SP} PDB: 2zbi_A 3k8v_A
Length = 326
Score = 71.3 bits (173), Expect = 4e-13
Identities = 51/281 (18%), Positives = 107/281 (38%), Gaps = 9/281 (3%)
Query: 23 NLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSDNGALSAVSDAIGLGSSKVDIAKAGMS 82
+L R+SSGLR++ A D+AA +I+ M + L+ G S A+ +
Sbjct: 4 SLSTSLQRLSSGLRINSAKDDAAGLAISDRMTAQIKGLTQAQRNANDGISLAQTAEGALG 63
Query: 83 KAIDV---MSTIKNKITAGVERGTDSKSIQSEITQLQSQLRDIARGSSFNGENWLRTDLG 139
+ + + + + + G TD ++Q+E+TQLQS+++ +A +SFNG+ L
Sbjct: 64 EISNNLQRIRELAVQASNGTNTQTDRDALQAEVTQLQSEIQRVAEQTSFNGQKLLDGSFN 123
Query: 140 SSTASIAKSVIGSFIRDDNGKVQITTIDYYLDPETVLLDSSTDGTERYGLLDRNHKIKVE 199
I + + Q ++ L T +D++ + + I
Sbjct: 124 GVQFQIGANAGETIGVSKIMNAQTASLGGSLTRTTSTIDATDLTKYDTAMAAGDLTINGV 183
Query: 200 PQVLKDIDVSVYDASGTISTKKFKLATTSGAWLKAANATFDQAKGIATI-PVPLPAAPAA 258
D + + + ++ A + A++D+ G T+ A A
Sbjct: 184 DVGKIDAASTAQERAAQLTE-----AINRVSSQTNVGASYDKTTGQVTLTSNAAIAVAGA 238
Query: 259 PNTTSGTSGSKSPSVAASATYIRMGNSDIWVRATTKNSITS 299
N + + + + + T + + + + +IT
Sbjct: 239 ANDATVAGWANNATTGTATTTTGINSLTVSSFTNAQQTITQ 279
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 57.3 bits (138), Expect = 8e-09
Identities = 76/545 (13%), Positives = 159/545 (29%), Gaps = 210/545 (38%)
Query: 11 MSASQKLRD--INY-NLEVVQDRVSSGLRVSDAADNAAYWSIAQIMKSD-NGALSAVSDA 66
M A R +++ +LE V L V A + IA ++ N L ++
Sbjct: 1 MDAYS-TRPLTLSHGSLEHV-------LLVP-----TASFFIASQLQEQFNKILPEPTEG 47
Query: 67 IGLG---SSKVDIAKAGMSKAID-VMSTIKNKITAGVERGTDSKSIQSEITQLQSQ-LR- 120
++ ++ K + V S ++ + G + + +T+ ++ L
Sbjct: 48 FAADDEPTTPAELV----GKFLGYVSSLVEPS-----KVGQFDQVLNLCLTEFENCYLEG 98
Query: 121 -DI-ARGSSFNGEN---------WLRT------DLGSSTASIAKSVIGSFIRDDNGKVQI 163
DI A + EN ++ + S + F G Q+
Sbjct: 99 NDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL--FRAVGEGNAQL 156
Query: 164 TTI--------DY----------Y---LDPETVLLDSSTDGTERYGLLDRNHKIKVEPQV 202
I DY Y + L+ S + L +
Sbjct: 157 VAIFGGQGNTDDYFEELRDLYQTYHVLVGD---LIKFSAE------TLSE---LIRTTLD 204
Query: 203 LKDIDVSVYDASGTISTKKFKLATTSGAWLKAANATFDQAKGIATIPVPLP--------- 253
+ + + T+ + WL+ + T D+ + +IP+ P
Sbjct: 205 AEKV----F-------TQGLNIL----EWLENPSNTPDKDY-LLSIPISCPLIGVIQLAH 248
Query: 254 ---AA------PAAPNTT-SGTSG-SKSPSVAAS-ATYIRMGNSDIWVR--ATTKNSIT- 298
A P + G +G S+ A + A +D W + + +IT
Sbjct: 249 YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE------TDSWESFFVSVRKAITV 302
Query: 299 -------SDPGYTNSTVAKVGNTHYYVDTESTTLDSRKDLPKEIDSGY----SMVTL-NI 346
Y N+++ S DS +++ M+++ N+
Sbjct: 303 LFFIGVRCYEAYPNTSLP-----------PSILEDS-------LENNEGVPSPMLSISNL 344
Query: 347 TRHA---NTDAYNEKLAMEEMVS---------FI-----------DTQIKCATAAAG--- 380
T+ + N L + V + + ++ A A +G
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ 404
Query: 381 -KIGSISSR---IHLQEDFI--------KLMRDAVEKGVGRLVDADMASESTRLSALQTQ 428
+I S R + F+ L+ A + ++ D+ + +A
Sbjct: 405 SRI-PFSERKLKFSNR--FLPVASPFHSHLLVPASDL-----INKDLVKNNVSFNA---- 452
Query: 429 QQLAV 433
+ + +
Sbjct: 453 KDIQI 457
Score = 40.7 bits (95), Expect = 7e-04
Identities = 57/435 (13%), Positives = 107/435 (24%), Gaps = 195/435 (44%)
Query: 107 SIQSEI---TQLQ---SQLRDIARGSSFNGENWLRTDLGSSTASIA-----KSVIG---- 151
S++ + T SQL++ F L T A +
Sbjct: 15 SLEHVLLVPTASFFIASQLQE-----QF------NKILPEPTEGFAADDEPTTPAELVGK 63
Query: 152 --SFIRDDNGKVQITTIDYYLDPETVLLDSSTDGTERYGLLDRN-HKIKVEPQVLKDIDV 208
++ V+ + + + +L+ E L + H + + +L++ D
Sbjct: 64 FLGYVSS---LVEPSKVGQFDQ----VLNLCLTEFENCYLEGNDIHALAAK--LLQEND- 113
Query: 209 SVYDASGTISTKKFKLATTSGAWLKAANATFDQAKGIATIPVPLPAAPAAPNTTSGTSGS 268
T+ K +K A +
Sbjct: 114 ------TTLVKTK--------ELIKNY---I--------------TARIM-------AKR 135
Query: 269 KSPSVAASATYIRMGNSDIWVRATTKNSITSDPGYTNSTVAKV-------GNTHYYVD-- 319
+ SA + RA + + A++ GNT Y +
Sbjct: 136 PFDKKSNSALF----------RAVGEGN------------AQLVAIFGGQGNTDDYFEEL 173
Query: 320 ----------------TESTTLDSRKDLPKEIDSGYSMVTLNIT---RHANT--D-AYNE 357
+ TL + + ++ LNI + + D Y
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ-GLNILEWLENPSNTPDKDY-- 230
Query: 358 KLAMEEMVSF--ID-TQIKCATAAAGKI-----GSISSRI-----HLQ------------ 392
L +S I Q+ K+ G + S + H Q
Sbjct: 231 -LLSIP-ISCPLIGVIQL-AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD 287
Query: 393 --EDFIKLMRDAVEK----GVGRLVDADMASESTRLSALQTQQQLAVQAL--SIVNNSTA 444
E F +R A+ GV + +L SI+ +S
Sbjct: 288 SWESFFVSVRKAITVLFFIGV----------RC--------YEAYPNTSLPPSILEDSLE 329
Query: 445 R-------ILSLFRG 452
+LS+
Sbjct: 330 NNEGVPSPMLSI-SN 343
>1ory_B Flagellin; flagellar chaperone, cytosolic export chaperone, FLIS,
FLIC; 2.45A {Aquifex aeolicus}
Length = 55
Score = 40.8 bits (96), Expect = 6e-04
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 408 GRLVDADMASESTRLSALQTQQQLAVQALSIVNNSTARILSLFR 451
+ + D A E T + Q + Q V L+ N +L L R
Sbjct: 12 SIIRNVDFAKEMTEFTKYQIRMQSGVAMLAQANALPQLVLQLLR 55
>1io1_A Phase 1 flagellin; beta-folium, structural protein; 2.00A
{Salmonella typhimurium} SCOP: e.32.1.1
Length = 398
Score = 35.8 bits (81), Expect = 0.019
Identities = 39/340 (11%), Positives = 78/340 (22%), Gaps = 8/340 (2%)
Query: 50 AQIMKSDNGALSAVSDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITA---GVERGTDSK 106
A I K A +D I + + +++ + + ++ +D
Sbjct: 3 ANI-KGLTQASRNANDGISI----AQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLD 57
Query: 107 SIQSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDNGKVQITTI 166
SIQ+EITQ +++ ++ + FNG L D + A I Q +
Sbjct: 58 SIQAEITQRLNEIDRVSGQTQFNGVKVLAQDNTLTIQVGANDGETIDIDLKQINSQTLGL 117
Query: 167 DYYLDPETVLLDSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTKKFKLAT 226
D + + + Y + + G +
Sbjct: 118 DTLNVQQKYKVSDTAATVTGYADTTIALDNSTFKASATGLGGTDQKIDGDLKFDDTTGKY 177
Query: 227 TSGAWLKAANATFDQAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSD 286
+ + + + + + + +
Sbjct: 178 YAKVTVTGGTGKDGYYEVSVDKTNGEVTLAGGATSPLTGGLPATATEDVKNVQVANADLT 237
Query: 287 IWVRATTKNSITSDPGYTNSTVAKVGNTHYYVDTESTTLDSRKDLPKEIDSGYSMVTLNI 346
A T +T + D + D S+ T
Sbjct: 238 EAKAALTAAGVTGTASVVKMSYTDNNGKTIDGGLAVKVGDDYYSATQNKDGSISINTTKY 297
Query: 347 TRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSIS 386
T T I T AA K +
Sbjct: 298 TADDGTSKTALNKLGGADGKTEVVSIGGKTYAASKAEGHN 337
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.090
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 8/32 (25%)
Query: 199 EPQVLKDIDVS--VY--DASGTISTKKFKLAT 226
E Q LK + S +Y D++ ++ K AT
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIK----AT 45
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism,
pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A
{Trypanosoma cruzi} SCOP: c.67.1.1
Length = 416
Score = 30.6 bits (67), Expect = 0.67
Identities = 6/36 (16%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 122 IARGSSFNGENWLRTDLGSSTASIAKSV--IGSFIR 155
+ G+ F+ + R ++V I +F +
Sbjct: 376 VLPGTIFHAPGFTRLTTTRPVEVYREAVERIKAFCQ 411
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics,
structural genomics consortium, disease mutation,
phenylalanine catabolism; HET: PLP; 2.30A {Homo sapiens}
Length = 427
Score = 30.1 bits (66), Expect = 1.0
Identities = 5/36 (13%), Positives = 12/36 (33%), Gaps = 2/36 (5%)
Query: 122 IARGSSFNGENWLRTDLGSSTASIAKSV--IGSFIR 155
+ F N++R + + ++ I F
Sbjct: 387 CLPATCFEYPNFIRVVITVPEVMMLEACSRIQEFCE 422
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis,
dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus
subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Length = 349
Score = 29.3 bits (65), Expect = 1.8
Identities = 21/105 (20%), Positives = 30/105 (28%), Gaps = 12/105 (11%)
Query: 196 IKVEPQVLKDIDVSVYDASGTISTKKFKL-----ATTSGAWLKAANATFDQAKGIATIPV 250
I L D+ + D S I A T G A+ + +
Sbjct: 28 ITFVHVSLPDLALEQVDISTKIGELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAGI 87
Query: 251 PLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSDIWVRATTKN 295
PL S S K PS S +R N + + A +
Sbjct: 88 PL-------AVGSQMSALKDPSERLSYEIVRKENPNGLIFANLGS 125
>2d4x_A Flagellar HOOK-associated protein 3; multi-domain protein,
alpha-helical bundle, complex all- beta folds,
structural protein; 1.90A {Salmonella typhimurium}
Length = 248
Score = 29.0 bits (63), Expect = 2.6
Identities = 14/135 (10%), Positives = 37/135 (27%)
Query: 283 GNSDIWVRATTKNSITSDPGYTNSTVAKVGNTHYYVDTESTTLDSRKDLPKEIDSGYSMV 342
G ++ T+ ++ T A++ N+ + +
Sbjct: 113 GGYHGGEKSVTQQVDSARTMVIGHTGAQIFNSITSNAVPEPDGSDSEKNLFVMLDTAIAA 172
Query: 343 TLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKLMRDA 402
N + A+++ + + ++G+ S + +
Sbjct: 173 LKTPVEGNNVEKEKAAAAIDKTNRGLKNSLNNVLTVRAELGTQLSELSTLDSLGSDRALG 232
Query: 403 VEKGVGRLVDADMAS 417
+ + LVD D S
Sbjct: 233 QKLQMSNLVDVDWNS 247
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 28.6 bits (63), Expect = 2.6
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Query: 242 AKGIATIP--VPLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSDIWV-RATTKNSIT 298
A+GI T P V LP +P + T G G S S + T +S+ W + T +I
Sbjct: 613 ARGIETRPAQVILPMSPN--HGTFGGDGMYSESKLSLETLFNRWHSESWANQLTVCGAII 670
Query: 299 SDPGYTNST 307
G+T T
Sbjct: 671 ---GWTRGT 676
>2zru_A Isopentenyl-diphosphate delta-isomerase; type 2, IDI, FMN,
isopentenyl diphosphate isomerase, cytoplasm,
flavoprotein, isoprene biosynthesis; HET: FMN; 2.00A
{Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A*
2zry_A* 2zrz_A*
Length = 368
Score = 28.6 bits (63), Expect = 3.2
Identities = 16/128 (12%), Positives = 32/128 (25%), Gaps = 21/128 (16%)
Query: 166 IDYYLDPETVLLDSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTKKFKL- 224
++ L SST L+ + + Q I S + K+ +
Sbjct: 12 VEIAAFENVDGLSSST-------FLND---VILVHQGFPGISFSEINTKTKFFRKEISVP 61
Query: 225 ---ATTSGAWLKAANATFDQAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIR 281
+G + A+ +P+ S + S +R
Sbjct: 62 VMVTGMTGGRNELGRINKIIAEVAEKFGIPM-------GVGSQRVAIEKAEARESFAIVR 114
Query: 282 MGNSDIWV 289
I +
Sbjct: 115 KVAPTIPI 122
>3k1h_A HP1076, putative uncharacterized protein; FLIS interacting protein,
hypothetical protein, chaperone; 1.74A {Helicobacter
pylori}
Length = 158
Score = 28.3 bits (62), Expect = 3.9
Identities = 6/36 (16%), Positives = 13/36 (36%)
Query: 109 QSEITQLQSQLRDIARGSSFNGENWLRTDLGSSTAS 144
+ + ++ +LR+I F T L +
Sbjct: 56 ALQASIIKQELREIVENCQFLASPLFDTQLNIAIND 91
>3ks7_A Putative putative pngase F; putative peptide:N-glycosidase F
(pngase F), structural genomics; 2.30A {Bacteroides
fragilis nctc 9343}
Length = 397
Score = 27.7 bits (61), Expect = 6.1
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 12/95 (12%)
Query: 294 KNSITSDPGYTNSTVAKVGNTHYYVDTESTTLDSRKDLPKEI--DSGYSMVTL--NITRH 349
K S + V + NT YY+ + +R+D+ + G + L +T H
Sbjct: 208 KESRLACDVLPKRHVEPLMNTVYYMGQSYPDIFARRDVSTDFTVPKGAKNIRLKYIVTGH 267
Query: 350 ANTDAYNE--------KLAMEEMVSFIDTQIKCAT 376
+E + +E+++FI + CA+
Sbjct: 268 GGHSGGDEFVQKRNIISVDGKEVLNFIPWRDDCAS 302
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum}
SCOP: c.67.1.1
Length = 388
Score = 27.3 bits (60), Expect = 6.9
Identities = 5/36 (13%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 122 IARGSSFNGENWLRTDLGSSTASIAKSV--IGSFIR 155
G++F ++ +R + +I + + + F+
Sbjct: 350 TVPGAAFGADDCIRLSYATDLDTIKRGMERLEKFLH 385
>3er9_B Poly(A) polymerase catalytic subunit; polyadenylate polymerase,
translocation, single tranded RNA poly(A) polymerase,
RNA protein complex, processivity, heterodimer; HET:
3AT; 2.06A {Vaccinia virus WR} PDB: 3er8_C* 3erc_C*
2ga9_D* 2gaf_D
Length = 479
Score = 27.1 bits (60), Expect = 7.9
Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 10/77 (12%)
Query: 89 STIKNKITAGVERGTDSKSIQSEITQLQSQLRDIARGSSFNGENWLR----------TDL 138
+T+ N +E +E L+SQ R+I + + FN + ++ +D+
Sbjct: 8 NTLPNITLKIIETYLGRVPSVNEYHMLKSQARNIQKITVFNKDIFVSLVKKNKKRFFSDV 67
Query: 139 GSSTASIAKSVIGSFIR 155
+S + I ++ F +
Sbjct: 68 NTSASEIKDRILSYFSK 84
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A
1r70_B 3cm9_A
Length = 475
Score = 27.1 bits (59), Expect = 8.6
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 212 DASGTISTKKFKLATTSGAWLKAANAT-----FDQAKGIATIPVPLPAAPAAPNTTSGTS 266
DASG + T +L + L + T + T+P P+P+ P P+ + T
Sbjct: 180 DASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPS--TP 237
Query: 267 GSKSPS 272
+ SPS
Sbjct: 238 PTPSPS 243
>1p1j_A Inositol-3-phosphate synthase; 1L-MYO-inositol 1-phosphate, NADH,
isomerase, rossmann fold; HET: NAI; 1.70A {Saccharomyces
cerevisiae} SCOP: c.2.1.3 d.81.1.3 PDB: 1jkf_A* 1la2_A*
1p1f_A 1jki_A* 1p1i_A* 1p1h_A* 1p1k_A* 1rm0_A*
Length = 533
Score = 26.8 bits (59), Expect = 9.7
Identities = 9/41 (21%), Positives = 15/41 (36%)
Query: 293 TKNSITSDPGYTNSTVAKVGNTHYYVDTESTTLDSRKDLPK 333
N + + Y N+ V K + + V + DL K
Sbjct: 22 KDNELLTKYSYENAVVTKTASGRFDVTPTVQDYVFKLDLKK 62
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.311 0.125 0.336
Gapped
Lambda K H
0.267 0.0547 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,417,675
Number of extensions: 149422
Number of successful extensions: 376
Number of sequences better than 10.0: 1
Number of HSP's gapped: 373
Number of HSP's successfully gapped: 29
Length of query: 452
Length of database: 5,693,230
Length adjustment: 96
Effective length of query: 356
Effective length of database: 3,365,806
Effective search space: 1198226936
Effective search space used: 1198226936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.5 bits)