RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780531|ref|YP_003064944.1| flagellin domain-containing protein [Candidatus Liberibacter asiaticus str. psy62] (452 letters) >d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium [TaxId: 90371]} Length = 395 Score = 35.9 bits (81), Expect = 0.006 Identities = 36/333 (10%), Positives = 75/333 (22%), Gaps = 7/333 (2%) Query: 57 NGALSAVSDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITA---GVERGTDSKSIQSEIT 113 A +D I + + +++ + + ++ +D SIQ+EIT Sbjct: 6 TQASRNANDGISI----AQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEIT 61 Query: 114 QLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDNGKVQITTIDYYLDPE 173 Q +++ ++ + FNG L D + A I Q +D + Sbjct: 62 QRLNEIDRVSGQTQFNGVKVLAQDNTLTIQVGANDGETIDIDLKQINSQTLGLDTLNVQQ 121 Query: 174 TVLLDSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTKKFKLATTSGAWLK 233 + + Y + + G + + + Sbjct: 122 KYKVSDTAATVTGYADTTIALDNSTFKASATGLGGTDQKIDGDLKFDDTTGKYYAKVTVT 181 Query: 234 AANATFDQAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSDIWVRATT 293 + + + + + + A T Sbjct: 182 GGTGKDGYYEVSVDKTNGEVTLAGGATSPLTGGLPATATEDVKNVQVANADLTEAKAALT 241 Query: 294 KNSITSDPGYTNSTVAKVGNTHYYVDTESTTLDSRKDLPKEIDSGYSMVTLNITRHANTD 353 +T + D + D S+ T T T Sbjct: 242 AAGVTGTASVVKMSYTDNNGKTIDGGLAVKVGDDYYSATQNKDGSISINTTKYTADDGTS 301 Query: 354 AYNEKLAMEEMVSFIDTQIKCATAAAGKIGSIS 386 I T AA K + Sbjct: 302 KTALNKLGGADGKTEVVSIGGKTYAASKAEGHN 334 >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} Length = 412 Score = 31.0 bits (68), Expect = 0.23 Identities = 6/36 (16%), Positives = 14/36 (38%), Gaps = 2/36 (5%) Query: 122 IARGSSFNGENWLRTDLGSSTASIAKSV--IGSFIR 155 + G+ F+ + R ++V I +F + Sbjct: 373 VLPGTIFHAPGFTRLTTTRPVEVYREAVERIKAFCQ 408 >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} Length = 329 Score = 29.4 bits (65), Expect = 0.54 Identities = 22/113 (19%), Positives = 32/113 (28%), Gaps = 12/113 (10%) Query: 195 KIKVEPQVLKDIDVSVYDASGTISTKKFKL-----ATTSGAWLKAANATFDQAKGIATIP 249 I L D+ + D S I A T G A+ + Sbjct: 7 DITFVHVSLPDLALEQVDISTKIGELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAG 66 Query: 250 VPLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSDIWVRATTKNSITSDPG 302 +PL S S K PS S +R N + + A + T+ Sbjct: 67 IPL-------AVGSQMSALKDPSERLSYEIVRKENPNGLIFANLGSEATAAQA 112 >d2izpa1 a.250.1.1 (A:1035-1301) Putative membrane antigen BipD {Burkholderia pseudomallei [TaxId: 28450]} Length = 267 Score = 28.3 bits (63), Expect = 1.2 Identities = 27/136 (19%), Positives = 44/136 (32%), Gaps = 27/136 (19%) Query: 60 LSAVSDAIGLGSSKVDIAKAGMSKAIDVM---STIKNKITAGVERGTDSK------SIQS 110 L + D IG G S +D + + + +K+ + D I++ Sbjct: 96 LQGLVDVIGQGKSDIDAYATIVEGLTKYFQSVADVMSKLQDYISAKDDKNMKIDGGKIKA 155 Query: 111 EITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDNGKVQITTIDYYL 170 I Q+ L + + W R +LG + D+G V I Sbjct: 156 LIQQVIDHLPTMQLPKGADIARW-RKELG-----------DAVSISDSGVVTI-----NP 198 Query: 171 DPETVLLDSST-DGTE 185 D + DS DGT Sbjct: 199 DKLIKMRDSLPPDGTV 214 >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388 Score = 27.8 bits (61), Expect = 1.8 Identities = 5/36 (13%), Positives = 16/36 (44%), Gaps = 2/36 (5%) Query: 122 IARGSSFNGENWLRTDLGSSTASIAKSV--IGSFIR 155 G++F ++ +R + +I + + + F+ Sbjct: 350 TVPGAAFGADDCIRLSYATDLDTIKRGMERLEKFLH 385 >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} Length = 375 Score = 27.3 bits (59), Expect = 2.5 Identities = 7/35 (20%), Positives = 17/35 (48%), Gaps = 2/35 (5%) Query: 122 IARGSSFNGENWLRTDLGSSTASIAKSV--IGSFI 154 + GS+F ++R +S + +++ I F+ Sbjct: 339 LVPGSAFLKPGFVRLSFATSIERLTEALDRIEDFL 373 >d1ub2a1 a.93.1.3 (A:21-426) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]} Length = 406 Score = 26.6 bits (58), Expect = 3.9 Identities = 25/180 (13%), Positives = 43/180 (23%), Gaps = 11/180 (6%) Query: 231 WLKAANATFDQAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIR-----MGNS 285 W + + G + PL A + +P +A +R M + Sbjct: 171 WFPPSTNPNSRYTGDRELENPLAAVTMGLIYVNPEGVDGNPDPLKTAHDVRVTFARMAMN 230 Query: 286 DIWVRATTKNSITSDPGYTNSTVAKVGNTHYYVDTESTTL------DSRKDLPKEIDSGY 339 D A T T + N A +G D E L S Sbjct: 231 DEETVALTAGGHTVGKCHGNGNAALLGPEPEGADVEDQGLGWINKTQSGIGRNAVTSGLE 290 Query: 340 SMVTLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKLM 399 T + T+ N L + + + + + L+ Sbjct: 291 GAWTPHPTQWDNGYFAVCSLNYDWELKKNPAGAWQWEPINPREEDLPVDVEDPSIRRNLV 350 >d2j8ga2 c.1.8.8 (A:2-190) N-terminal domain of endolysin {Bacteriophage cp-1 [TaxId: 10747]} Length = 189 Score = 26.2 bits (57), Expect = 5.1 Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 2/29 (6%) Query: 206 IDVSVYDASGTISTKKFKLATTSGAWLKA 234 +DVS ++ G T + T+ +K Sbjct: 8 VDVSSHN--GYDITGILEQMGTTNTIIKI 34 >d2b7oa1 c.1.10.8 (A:1-462) Probable DAHP synthetase AroG, phenylalanine-repressible {Mycobacterium tuberculosis [TaxId: 1773]} Length = 462 Score = 25.6 bits (56), Expect = 8.8 Identities = 9/18 (50%), Positives = 13/18 (72%) Query: 111 EITQLQSQLRDIARGSSF 128 EI +LQ QL +A+G +F Sbjct: 63 EIVRLQEQLAQVAKGEAF 80 >d1sj7a1 a.215.1.1 (A:488-654) A middle domain of Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 167 Score = 25.5 bits (56), Expect = 9.8 Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 3/58 (5%) Query: 71 SSKVDIAKAGMSKAIDVMSTIKNKI---TAGVERGTDSKSIQSEITQLQSQLRDIARG 125 +K+D +K + +D ++ + TAG TD ++ +T + S L +++RG Sbjct: 46 KNKMDESKHEIHSQVDAITAGTASVVNLTAGDPAETDYTAVGCAVTTISSNLTEMSRG 103 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.311 0.125 0.336 Gapped Lambda K H 0.267 0.0518 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,463,396 Number of extensions: 63736 Number of successful extensions: 152 Number of sequences better than 10.0: 1 Number of HSP's gapped: 152 Number of HSP's successfully gapped: 15 Length of query: 452 Length of database: 2,407,596 Length adjustment: 88 Effective length of query: 364 Effective length of database: 1,199,356 Effective search space: 436565584 Effective search space used: 436565584 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 54 (25.1 bits)