RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780531|ref|YP_003064944.1| flagellin domain-containing
protein [Candidatus Liberibacter asiaticus str. psy62]
         (452 letters)



>d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium
           [TaxId: 90371]}
          Length = 395

 Score = 35.9 bits (81), Expect = 0.006
 Identities = 36/333 (10%), Positives = 75/333 (22%), Gaps = 7/333 (2%)

Query: 57  NGALSAVSDAIGLGSSKVDIAKAGMSKAIDVMSTIKNKITA---GVERGTDSKSIQSEIT 113
             A    +D I +        +  +++  + +  ++             +D  SIQ+EIT
Sbjct: 6   TQASRNANDGISI----AQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEIT 61

Query: 114 QLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDNGKVQITTIDYYLDPE 173
           Q  +++  ++  + FNG   L  D   +    A       I       Q   +D     +
Sbjct: 62  QRLNEIDRVSGQTQFNGVKVLAQDNTLTIQVGANDGETIDIDLKQINSQTLGLDTLNVQQ 121

Query: 174 TVLLDSSTDGTERYGLLDRNHKIKVEPQVLKDIDVSVYDASGTISTKKFKLATTSGAWLK 233
              +  +      Y                  +  +     G +          +   + 
Sbjct: 122 KYKVSDTAATVTGYADTTIALDNSTFKASATGLGGTDQKIDGDLKFDDTTGKYYAKVTVT 181

Query: 234 AANATFDQAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSDIWVRATT 293
                    +                 +        + +       +   +      A T
Sbjct: 182 GGTGKDGYYEVSVDKTNGEVTLAGGATSPLTGGLPATATEDVKNVQVANADLTEAKAALT 241

Query: 294 KNSITSDPGYTNSTVAKVGNTHYYVDTESTTLDSRKDLPKEIDSGYSMVTLNITRHANTD 353
              +T        +                  D      +  D   S+ T   T    T 
Sbjct: 242 AAGVTGTASVVKMSYTDNNGKTIDGGLAVKVGDDYYSATQNKDGSISINTTKYTADDGTS 301

Query: 354 AYNEKLAMEEMVSFIDTQIKCATAAAGKIGSIS 386
                             I   T AA K    +
Sbjct: 302 KTALNKLGGADGKTEVVSIGGKTYAASKAEGHN 334


>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma
           cruzi [TaxId: 5693]}
          Length = 412

 Score = 31.0 bits (68), Expect = 0.23
 Identities = 6/36 (16%), Positives = 14/36 (38%), Gaps = 2/36 (5%)

Query: 122 IARGSSFNGENWLRTDLGSSTASIAKSV--IGSFIR 155
           +  G+ F+   + R           ++V  I +F +
Sbjct: 373 VLPGTIFHAPGFTRLTTTRPVEVYREAVERIKAFCQ 408


>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase
           {Bacillus subtilis [TaxId: 1423]}
          Length = 329

 Score = 29.4 bits (65), Expect = 0.54
 Identities = 22/113 (19%), Positives = 32/113 (28%), Gaps = 12/113 (10%)

Query: 195 KIKVEPQVLKDIDVSVYDASGTISTKKFKL-----ATTSGAWLKAANATFDQAKGIATIP 249
            I      L D+ +   D S  I            A T G            A+  +   
Sbjct: 7   DITFVHVSLPDLALEQVDISTKIGELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAG 66

Query: 250 VPLPAAPAAPNTTSGTSGSKSPSVAASATYIRMGNSDIWVRATTKNSITSDPG 302
           +PL          S  S  K PS   S   +R  N +  + A   +  T+   
Sbjct: 67  IPL-------AVGSQMSALKDPSERLSYEIVRKENPNGLIFANLGSEATAAQA 112


>d2izpa1 a.250.1.1 (A:1035-1301) Putative membrane antigen BipD
           {Burkholderia pseudomallei [TaxId: 28450]}
          Length = 267

 Score = 28.3 bits (63), Expect = 1.2
 Identities = 27/136 (19%), Positives = 44/136 (32%), Gaps = 27/136 (19%)

Query: 60  LSAVSDAIGLGSSKVDIAKAGMSKAIDVM---STIKNKITAGVERGTDSK------SIQS 110
           L  + D IG G S +D     +          + + +K+   +    D         I++
Sbjct: 96  LQGLVDVIGQGKSDIDAYATIVEGLTKYFQSVADVMSKLQDYISAKDDKNMKIDGGKIKA 155

Query: 111 EITQLQSQLRDIARGSSFNGENWLRTDLGSSTASIAKSVIGSFIRDDNGKVQITTIDYYL 170
            I Q+   L  +      +   W R +LG            +    D+G V I       
Sbjct: 156 LIQQVIDHLPTMQLPKGADIARW-RKELG-----------DAVSISDSGVVTI-----NP 198

Query: 171 DPETVLLDSST-DGTE 185
           D    + DS   DGT 
Sbjct: 199 DKLIKMRDSLPPDGTV 214


>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium
           lapideum [TaxId: 32060]}
          Length = 388

 Score = 27.8 bits (61), Expect = 1.8
 Identities = 5/36 (13%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 122 IARGSSFNGENWLRTDLGSSTASIAKSV--IGSFIR 155
              G++F  ++ +R    +   +I + +  +  F+ 
Sbjct: 350 TVPGAAFGADDCIRLSYATDLDTIKRGMERLEKFLH 385


>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga
           maritima [TaxId: 2336]}
          Length = 375

 Score = 27.3 bits (59), Expect = 2.5
 Identities = 7/35 (20%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 122 IARGSSFNGENWLRTDLGSSTASIAKSV--IGSFI 154
           +  GS+F    ++R    +S   + +++  I  F+
Sbjct: 339 LVPGSAFLKPGFVRLSFATSIERLTEALDRIEDFL 373


>d1ub2a1 a.93.1.3 (A:21-426) Catalase-peroxidase KatG {Synechococcus
           sp. pcc 7942 [TaxId: 1140]}
          Length = 406

 Score = 26.6 bits (58), Expect = 3.9
 Identities = 25/180 (13%), Positives = 43/180 (23%), Gaps = 11/180 (6%)

Query: 231 WLKAANATFDQAKGIATIPVPLPAAPAAPNTTSGTSGSKSPSVAASATYIR-----MGNS 285
           W   +     +  G   +  PL A        +      +P    +A  +R     M  +
Sbjct: 171 WFPPSTNPNSRYTGDRELENPLAAVTMGLIYVNPEGVDGNPDPLKTAHDVRVTFARMAMN 230

Query: 286 DIWVRATTKNSITSDPGYTNSTVAKVGNTHYYVDTESTTL------DSRKDLPKEIDSGY 339
           D    A T    T    + N   A +G      D E   L       S            
Sbjct: 231 DEETVALTAGGHTVGKCHGNGNAALLGPEPEGADVEDQGLGWINKTQSGIGRNAVTSGLE 290

Query: 340 SMVTLNITRHANTDAYNEKLAMEEMVSFIDTQIKCATAAAGKIGSISSRIHLQEDFIKLM 399
              T + T+  N       L  +  +               +   +   +        L+
Sbjct: 291 GAWTPHPTQWDNGYFAVCSLNYDWELKKNPAGAWQWEPINPREEDLPVDVEDPSIRRNLV 350


>d2j8ga2 c.1.8.8 (A:2-190) N-terminal domain of endolysin
           {Bacteriophage cp-1 [TaxId: 10747]}
          Length = 189

 Score = 26.2 bits (57), Expect = 5.1
 Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 2/29 (6%)

Query: 206 IDVSVYDASGTISTKKFKLATTSGAWLKA 234
           +DVS ++  G   T   +   T+   +K 
Sbjct: 8   VDVSSHN--GYDITGILEQMGTTNTIIKI 34


>d2b7oa1 c.1.10.8 (A:1-462) Probable DAHP synthetase AroG,
           phenylalanine-repressible {Mycobacterium tuberculosis
           [TaxId: 1773]}
          Length = 462

 Score = 25.6 bits (56), Expect = 8.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 111 EITQLQSQLRDIARGSSF 128
           EI +LQ QL  +A+G +F
Sbjct: 63  EIVRLQEQLAQVAKGEAF 80


>d1sj7a1 a.215.1.1 (A:488-654) A middle domain of Talin 1 {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 167

 Score = 25.5 bits (56), Expect = 9.8
 Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 71  SSKVDIAKAGMSKAIDVMSTIKNKI---TAGVERGTDSKSIQSEITQLQSQLRDIARG 125
            +K+D +K  +   +D ++     +   TAG    TD  ++   +T + S L +++RG
Sbjct: 46  KNKMDESKHEIHSQVDAITAGTASVVNLTAGDPAETDYTAVGCAVTTISSNLTEMSRG 103


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.311    0.125    0.336 

Gapped
Lambda     K      H
   0.267   0.0518    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,463,396
Number of extensions: 63736
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 15
Length of query: 452
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 364
Effective length of database: 1,199,356
Effective search space: 436565584
Effective search space used: 436565584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.1 bits)