RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780532|ref|YP_003064945.1| aminodeoxychorismate lyase
[Candidatus Liberibacter asiaticus str. psy62]
         (325 letters)



>2r1f_A Protein YCEG, predicted aminodeoxychorismate lyase;
           structural genomics, unknown function, PFAM 02618,
           PSI-2, protein structure initiative; 2.21A {Escherichia
           coli K12} (A:131-230)
          Length = 100

 Score =  132 bits (334), Expect = 6e-32
 Identities = 54/102 (52%), Positives = 64/102 (62%), Gaps = 4/102 (3%)

Query: 183 PIKSKEDLVILASIVEKETSRADERAHVASVFINRFSKSIRLQSDSTVIYGILEGDYDLT 242
           P K K  LV  ASI+EKET+ A ER  VASVFINR     RLQ+D TVIY    G  +  
Sbjct: 1   PYKDKNQLVTXASIIEKETAVASERDQVASVFINRLRIGXRLQTDPTVIY----GXGERY 56

Query: 243 NRKISRSDFSIKTPYNSYLMNGLPPTAISNPGRLSLEAVAKP 284
           N K+SR+D    T YN+Y + GLPP AI+ PG  SL+A A P
Sbjct: 57  NGKLSRADLETPTAYNTYTITGLPPGAIATPGADSLKAAAHP 98


>2r1f_A Protein YCEG, predicted aminodeoxychorismate lyase;
           structural genomics, unknown function, PFAM 02618,
           PSI-2, protein structure initiative; 2.21A {Escherichia
           coli K12} (A:37-130)
          Length = 94

 Score = 74.9 bits (184), Expect = 1e-14
 Identities = 18/91 (19%), Positives = 31/91 (34%), Gaps = 14/91 (15%)

Query: 105 MHSISFPEGFTVKQMARRLKDNPLLVGEL--------------PLELPLEGTLCPSTYNF 150
              +   EG  +    ++L++ P +   L                   +EG   P T+ +
Sbjct: 3   QFPLRLVEGXRLSDYLKQLREAPYIKHTLSDDKYATVAQALELENPEWIEGWFWPDTWXY 62

Query: 151 PLGTHRSEILNQAMLKQKQVVDEVWEIRDVD 181
              T    +L +A  K  + VD  WE R   
Sbjct: 63  TANTTDVALLKRAHKKXVKAVDSAWEGRADG 93


>2r1f_A Protein YCEG, predicted aminodeoxychorismate lyase;
           structural genomics, unknown function, PFAM 02618,
           PSI-2, protein structure initiative; 2.21A {Escherichia
           coli K12} (A:231-270)
          Length = 40

 Score = 53.1 bits (128), Expect = 5e-08
 Identities = 18/32 (56%), Positives = 21/32 (65%)

Query: 287 TEDLYFVGDGKGGHFFSTNFKDHTINVQKWRK 318
           T  LYFV DGKGGH F+TN   H  +VQ + K
Sbjct: 1   TPYLYFVADGKGGHTFNTNLASHNKSVQDYLK 32


>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase,
           translation termination, ATP-binding, cytoplasm,
           hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
           (A:1-326)
          Length = 326

 Score = 30.9 bits (69), Expect = 0.21
 Identities = 15/121 (12%), Positives = 33/121 (27%), Gaps = 31/121 (25%)

Query: 11  IFLLAIGVHIHVIRVYNATGPLQNDTIFLVRNNMSLKEISKNLFNGGVIVNPYIFRYVTQ 70
                I   I +      T     D   + R  +  ++I         +++        Q
Sbjct: 229 PKGAKIDAQIVI-----GTPGTVMD--LMKRRQLDARDIKV------FVLDEADNMLDQQ 275

Query: 71  FYFGSRGLKTGEYEIEKGSSMSQIAEKIMYGK-VLMHSISFPEGFTVKQMARRLKDNPLL 129
                        +  +      I   +     +++ S +F E   V++ A R   N   
Sbjct: 276 GL---------GDQSMR------IKHLLPRNTQIVLFSATFSE--RVEKYAERFAPNANE 318

Query: 130 V 130
           +
Sbjct: 319 I 319


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.320    0.138    0.398 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,416,081
Number of extensions: 107448
Number of successful extensions: 203
Number of sequences better than 10.0: 1
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 4
Length of query: 325
Length of database: 4,956,049
Length adjustment: 89
Effective length of query: 236
Effective length of database: 1,947,404
Effective search space: 459587344
Effective search space used: 459587344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.5 bits)