RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780532|ref|YP_003064945.1| aminodeoxychorismate lyase [Candidatus Liberibacter asiaticus str. psy62] (325 letters) >2r1f_A Protein YCEG, predicted aminodeoxychorismate lyase; structural genomics, unknown function, PFAM 02618, PSI-2, protein structure initiative; 2.21A {Escherichia coli K12} Length = 270 Score = 181 bits (461), Expect = 1e-46 Identities = 96/255 (37%), Positives = 131/255 (51%), Gaps = 18/255 (7%) Query: 78 LKTGEYEIEKGSSMSQIAEKIMYGKVLMHSISFPEGFTVKQMARRLKDNPLLVG------ 131 K G Y ++ ++ + + GK + EG + ++L++ P + Sbjct: 12 FKAGTYRFTPQMTVREMLKLLESGKEAQFPLRLVEGMRLSDYLKQLREAPYIKHTLSDDK 71 Query: 132 --------ELPLELPLEGTLCPSTYNFPLGTHRSEILNQAMLKQKQVVDEVWEIRDVDHP 183 EL +EG P T+ + T +L +A K + VD WE R P Sbjct: 72 YATVAQALELENPEWIEGWFWPDTWMYTANTTDVALLKRAHKKMVKAVDSAWEGRADGLP 131 Query: 184 IKSKEDLVILASIVEKETSRADERAHVASVFINRFSKSIRLQSDSTVIYGILEGDYDLTN 243 K K LV +ASI+EKET+ A ER VASVFINR +RLQ+D TVIYG+ + N Sbjct: 132 YKDKNQLVTMASIIEKETAVASERDQVASVFINRLRIGMRLQTDPTVIYGM----GERYN 187 Query: 244 RKISRSDFSIKTPYNSYLMNGLPPTAISNPGRLSLEAVAKPLHTEDLYFVGDGKGGHFFS 303 K+SR+D T YN+Y + GLPP AI+ PG SL+A A P T LYFV DGKGGH F+ Sbjct: 188 GKLSRADLETPTAYNTYTITGLPPGAIATPGADSLKAAAHPAKTPYLYFVADGKGGHTFN 247 Query: 304 TNFKDHTINVQKWRK 318 TN H +VQ + K Sbjct: 248 TNLASHNKSVQDYLK 262 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 48.8 bits (116), Expect = 2e-06 Identities = 43/246 (17%), Positives = 76/246 (30%), Gaps = 81/246 (32%) Query: 134 PLELPLEGTLCPSTYNFPLGTHRSEILNQAMLKQK------QVVDEVWEIRDVDHPIKSK 187 PL L G+L + + T I +Q L+++ + + D + Sbjct: 8 PLTLS-HGSL---EHVLLVPTASFFIASQ--LQEQFNKILPEPTEGFAA----DDEPTTP 57 Query: 188 EDLVI-----LASIVEKETSRADERAHVASVFINRFSKSIRLQSD-STVIYGILEGDYDL 241 +LV ++S+VE + V ++ + F +D + L + D Sbjct: 58 AELVGKFLGYVSSLVEPSK--VGQFDQVLNLCLTEFENCYLEGNDIHALA-AKLLQENDT 114 Query: 242 TNRKISRSDFSIKTPYNSYLMNGLPPTAISNPGRLSLEAV----AKPL-------HTED- 289 T K IK + +M P SN L AV A+ + +T+D Sbjct: 115 TLVKTKEL---IKNYITARIMAKRPFDKKSNSA-L-FRAVGEGNAQLVAIFGGQGNTDDY 169 Query: 290 ------LY-----FVGDGKGGHFFST-------------NFKD---HTINVQKWRKMSL- 321 LY VGD + + +N+ +W L Sbjct: 170 FEELRDLYQTYHVLVGD-----LIKFSAETLSELIRTTLDAEKVFTQGLNILEW----LE 220 Query: 322 --ESKP 325 + P Sbjct: 221 NPSNTP 226 >2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus CMCP6} PDB: 2plk_A* Length = 419 Score = 27.2 bits (59), Expect = 4.5 Identities = 6/28 (21%), Positives = 17/28 (60%) Query: 172 DEVWEIRDVDHPIKSKEDLVILASIVEK 199 +++I + P+ S E++ ++ + VE+ Sbjct: 25 QSIFDIHSLTSPVLSAEEIHLIEASVEQ 52 >2ane_A ATP-dependent protease LA; LONN119, LON protease, hydrolase; 2.03A {Escherichia coli} SCOP: b.122.1.10 Length = 125 Score = 26.7 bits (58), Expect = 7.7 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 6/91 (6%) Query: 132 ELPLELPLEGT-LCPSTYNFPL--GTHRS-EILNQAMLKQKQVVDEVWEIRDVDHPIKSK 187 E+P+ LPL + P PL G +S L AM K+++ + D P + Sbjct: 17 EIPV-LPLRDVVVYPHMV-IPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEPGVND 74 Query: 188 EDLVILASIVEKETSRADERAHVASVFINRF 218 V + + + D V + R Sbjct: 75 LFTVGTVASILQMLKLPDGTVKVLVEGLQRA 105 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.320 0.138 0.398 Gapped Lambda K H 0.267 0.0581 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,758,025 Number of extensions: 127508 Number of successful extensions: 289 Number of sequences better than 10.0: 1 Number of HSP's gapped: 287 Number of HSP's successfully gapped: 8 Length of query: 325 Length of database: 5,693,230 Length adjustment: 93 Effective length of query: 232 Effective length of database: 3,438,538 Effective search space: 797740816 Effective search space used: 797740816 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 57 (26.1 bits)