HHsearch alignment for GI: 254780533 and conserved domain: PRK08947
>PRK08947 fadA 3-ketoacyl-CoA thiolase; Reviewed.
Probab=99.56 E-value=8.2e-16 Score=120.01 Aligned_cols=269 Identities=24% Similarity=0.299 Sum_probs=161.6
Q ss_pred HHHHHHHHHHHHH-CCCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHCCCCCEEECCCCHHCCCCCCCCCC-
Q ss_conf 9999997632210-02681002686531102445568600000012345543210012100001321010223333321-
Q gi|254780533|r 82 LYGMVASDMALAD-SGWAPKTDKDRNSTGVVFGSGMGGLNRIVESSNVLRDGGPRKISPFTVPGSIISLLSGNISIRNQ- 159 (423)
Q Consensus 82 ~l~l~aa~~Al~d-AGl~~~~~~~~~r~gv~~Gs~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~~- 159 (423)
T Consensus 29 ~L~a~~i~~~l~r~~~l~~~~-Id----~vi~G~v~~~~~~---g~----------------------n~aR~aaL~aGl 78 (387)
T PRK08947 29 DLSAHLMRALLARNPALDPAE-IE----DIIWGCVQQTLEQ---GF----------------------NIARNAALLAGI 78 (387)
T ss_pred HHHHHHHHHHHHHCCCCCHHH-CC----EEEEEECCCCCCC---CC----------------------CHHHHHHHHCCC
T ss_conf 999999999997458969899-89----8999706655443---33----------------------599999997699
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCEEECHHHHHH-HHHH---------HHHHH----C-----------
Q ss_conf -10001133344443223443323313356021001210112232-2223---------43321----0-----------
Q gi|254780533|r 160 -LRGPNHAVTTACSSGAHAIGDASRLIAFGDADVMVAGGAEAPIC-RLGV---------ASFAA----C----------- 213 (423)
Q Consensus 160 -l~Gp~~ti~~aCsSsl~Ai~~A~~~i~~G~~d~aivGg~d~~~~-~~~~---------~~f~~----~----------- 213 (423)
T Consensus 79 p~~vpa~tVnr~C~SGl~Ai~~Aa~~I~~G~~dvvlaGGvEsMS~~P~~~~~~~~~~~~~~~~~~~~~Mg~tAE~~a~~~ 158 (387)
T PRK08947 79 PHTVPAVTVNRLCGSSMQALHDAARAIMTGDGDVFLIGGVEHMGHVPMSHGVDFHPGLSKNVAKASGMMGLTAEMLGKMH 158 (387)
T ss_pred CCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHH
T ss_conf 98886166401423799999999986527997789984102257786545778994201013021276778999999996
Q ss_pred ----------------CC--------CC-------------------CC----CCCCHHHH--HHH-HHCCCCCCC----
Q ss_conf ----------------12--------45-------------------66----66684220--022-203467653----
Q gi|254780533|r 214 ----------------RA--------LS-------------------TR----FNDDPTRA--SRP-FDQDRDGFV---- 239 (423)
Q Consensus 214 ----------------~~--------ls-------------------~~----~~~~p~~~--~rp-Fd~~~dG~~---- 239 (423)
T Consensus 159 gisRe~qD~~A~~Sh~rA~~A~~~g~f~~eIvpv~~~~~~g~~~~~~~De~~R~~~t~e~l~~L~p~f~p-~~GtvTagn 237 (387)
T PRK08947 159 GISREQQDAFAARSHQRAWAATQEGRFKNEIIPTEGHDADGVLKLFDYDEVIRPETTVEALAALRPAFDP-VNGTVTAGT 237 (387)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHCCCCCCCC-CCCCEECCC
T ss_conf 9899999999999999999998759950221564356788964785035565675775555204642247-788432677
Q ss_pred ---CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCEEEECCCCC
Q ss_conf ---32440454102345444332233332110012111122100012110013321013332322233331021036765
Q gi|254780533|r 240 ---MGEGAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITMPPEDGNGAYRCMSSAIARAKLLPSDIDYINAHGTST 316 (423)
Q Consensus 240 ---~gEGa~~lvLe~~~~A~~rg~~i~a~i~G~~~~~d~~~~~~~~~~~~~~~~~i~~aL~~a~i~~~di~~i~~hgtgt 316 (423)
T Consensus 238 ss~~~DGAAavll~s~~~a~~~gl~p~ari~~~~~~g~-----dP~~~~~gp~~A~~~~L~~agl~~~Did~~EinEAFA 312 (387)
T PRK08947 238 SSALSDGASAMLVMSESRAKELGLKPRARIRSMAVAGC-----DPSIMGYGPVPATQKALKRAGLSIADIDVFELNEAFA 312 (387)
T ss_pred CCCCCCHHHHHHHCCHHHHHHCCCCCEEEEEEEEEEEC-----CHHHCCCCHHHHHHHHHHHCCCCHHHCCEEEEHHHHH
T ss_conf 78433559999870899999779983399999998745-----8778082679999999998499865578422125668
Q ss_pred CCCCCHHHHHHHHHHC--CC-CCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4432013567764200--24-3411-137012212236899999999999998708327758887887448865078867
Q gi|254780533|r 317 IADTIELGAVERLMGD--SC-YHVS-MSSTKSAMGHLLGAAGAVEAAICNLAIRDGIVPATLNLDNPAKKTFIDLVPHRA 392 (423)
Q Consensus 317 ~~D~~E~~al~~~f~~--~~-~~~~-v~s~K~~~Gh~~~asG~~~l~~~~l~l~~~~ipp~~~~~~~~~~~~~~~v~~~~ 392 (423)
T Consensus 313 ~---q~l~~~~~-lg~~~~~~~kvN~~GGai-A~GHP~GATGarl~~~l~~~L~~------------------------- 362 (387)
T PRK08947 313 A---QSLPCLKD-LGLLDKMDEKVNLNGGAI-ALGHPLGCSGARISTTLLNLMER------------------------- 362 (387)
T ss_pred H---HHHHHHHH-CCCCCCCCCCCCCCCCHH-HHCCCCCCCHHHHHHHHHHHHHH-------------------------
T ss_conf 7---79999998-599889833578996588-73888110289999999999998-------------------------
Q ss_pred CCCCCCEEEEECCCCCCEEEEEEEEE
Q ss_conf 24788789994456777358999982
Q gi|254780533|r 393 IKKNVNVAMSNSFGFGGTNVSLVFRK 418 (423)
Q Consensus 393 ~~~~~~~al~~s~G~gG~n~~~il~~ 418 (423)
T Consensus 363 --~~~~~gl~s~c~ggG~g~A~~ier 386 (387)
T PRK08947 363 --KDAQFGLATMCIGLGQGIATVFER 386 (387)
T ss_pred --HCCCEEEEEECCCCCCEEEEEEEE
T ss_conf --199999999623214130799995