HHsearch alignment for GI: 254780533 and conserved domain: cd00826

>cd00826 nondecarbox_cond_enzymes nondecarboxylating condensing enzymes; In general, thiolases catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=99.68  E-value=7e-17  Score=126.86  Aligned_cols=253  Identities=23%  Similarity=0.286  Sum_probs=151.8

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHCCCCCEEECCCCHHCCCCCCC-
Q ss_conf             8999999999763221002681002686531102445568600000012345543210012100001321010223333-
Q gi|254780533|r   78 DQFILYGMVASDMALADSGWAPKTDKDRNSTGVVFGSGMGGLNRIVESSNVLRDGGPRKISPFTVPGSIISLLSGNISI-  156 (423)
Q Consensus        78 d~~~~l~l~aa~~Al~dAGl~~~~~~~~~r~gv~~Gs~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~-  156 (423)
T Consensus        21 ~~a~eL~~~ai~~al~~agi~~~~-Id----~vi~G~~~~~g~g~--------------------------n~ar~~~l~   69 (393)
T cd00826          21 DLAHEAGAKAIAAALEPAGVAAGA-VE----EACLGQVLGAGEGQ--------------------------NCAQQAAMH   69 (393)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHH-CC----EEEEEECCCCCCCC--------------------------CHHHHHHHH
T ss_conf             999999999999999982969899-89----89999258755554--------------------------199999997


Q ss_pred             -CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCEEECHHHHHHH-----------------------HHHHHHHH
Q ss_conf             -321100011333444432234433233133560210012101122322-----------------------22343321
Q gi|254780533|r  157 -RNQLRGPNHAVTTACSSGAHAIGDASRLIAFGDADVMVAGGAEAPICR-----------------------LGVASFAA  212 (423)
Q Consensus       157 -~~~l~Gp~~ti~~aCsSsl~Ai~~A~~~i~~G~~d~aivGg~d~~~~~-----------------------~~~~~f~~  212 (423)
T Consensus        70 ag~~~~vp~~tV~~~CaSG~~Ai~~A~~~I~sG~~dvvlagGvEsms~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~~s~  149 (393)
T cd00826          70 AGGLQEAPAIGMNNLCGSGLRALALAMQLIAGGDANCILAGGFEKMETSAENNAKEKHIDVLINKYGMRACPDAFALAGQ  149 (393)
T ss_pred             CCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCHHCCHHHHHHHH
T ss_conf             59998997688768478999999999999976999989995055067676435466668888763288312369999999


Q ss_pred             C--------CC-------C---CCC----CCCCH----------HH--HHHH-HHCCCCCC-------CCCCCCEEEECC
Q ss_conf             0--------12-------4---566----66684----------22--0022-20346765-------332440454102
Q gi|254780533|r  213 C--------RA-------L---STR----FNDDP----------TR--ASRP-FDQDRDGF-------VMGEGAGALVLE  250 (423)
Q Consensus       213 ~--------~~-------l---s~~----~~~~p----------~~--~~rp-Fd~~~dG~-------~~gEGa~~lvLe  250 (423)
T Consensus       150 ~~~~~a~~~G~~~e~~a~v~v~~~~~~~~~~~n~~a~~~~~~tle~~~~l~pv~~~~--g~lta~n~s~~sDGAAA~vl~  227 (393)
T cd00826         150 AGAEAAEKDGRFKDEFAKFGVKGRKGDIHSDADEYIQFGDEASLDEIAKLRPAFDKE--DFLTAGNACGLNDGAAAAILM  227 (393)
T ss_pred             HHHHHHHHHCCCHHHHCCEEEECCCCCEEECCCCCCCCCCCCCHHHHHHCCCCCCCC--CCCCCCCCCCCCCCEEEEEEE
T ss_conf             999999982997777230555067574652145333458776888896168864557--753244567888841789994


Q ss_pred             CCCCCCCCCCCCCC-------CCCCCCCCCCCCCCCC-CCCCCCCHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCH
Q ss_conf             34544433223333-------2110012111122100-012110013321013332322233331021036765443201
Q gi|254780533|r  251 DLEHAKARGAKIYS-------EIIGYGLSGDAFHITM-PPEDGNGAYRCMSSAIARAKLLPSDIDYINAHGTSTIADTIE  322 (423)
Q Consensus       251 ~~~~A~~rg~~i~a-------~i~G~~~~~d~~~~~~-~~~~~~~~~~~i~~aL~~a~i~~~di~~i~~hgtgt~~D~~E  322 (423)
T Consensus       228 se~~a~~~g~~~~~~~i~~~~~i~~~~~~~~--~p~~~~~~~~~~p~~A~~~al~~aGl~~~Did~~Ei~eaFa~---~~  302 (393)
T cd00826         228 SEAEAQKHGLQSKAREIQALEMITDMASTFE--DKKVIKMVGGDGPIEAARKALEKAGLGIGDLDLIEAHDAFAA---NA  302 (393)
T ss_pred             CHHHHHHCCCCCCCCCCCCEEEEEEEEECCC--CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEECCCCHH---HH
T ss_conf             3999997389641023112699997560232--841010124331899999999982998001664563242349---99


Q ss_pred             HHHHHHH-HH--------------CCCCCCCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             3567764-20--------------0243411137012--212236899999999999998708
Q gi|254780533|r  323 LGAVERL-MG--------------DSCYHVSMSSTKS--AMGHLLGAAGAVEAAICNLAIRDG  368 (423)
Q Consensus       323 ~~al~~~-f~--------------~~~~~~~v~s~K~--~~Gh~~~asG~~~l~~~~l~l~~~  368 (423)
T Consensus       303 l~~~e~lg~~~~g~~~~~~~~g~~~~~g~~pvN~~GG~ia~GHP~GAtG~~~~~~l~~qLr~~  365 (393)
T cd00826         303 CATNEALGLCPEGQGGALVDRGDNTYGGKSIINPNGGAIAIGHPIGASGAAICAELCFELKGE  365 (393)
T ss_pred             HHHHHHCCCCCCCCHHHHHHCCCCCCCCCCEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             999998098912231355540454458984387774587709836357999999999999766