HHsearch alignment for GI: 254780533 and conserved domain: cd00832

>cd00832 CLF Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria. CLFs have been shown to have decarboxylase activity towards malonyl-acyl carrier protein (ACP). CLFs are similar to other elongation ketosynthase domains, but their active site cysteine is replaced by a conserved glutamine.
Probab=100.00  E-value=0  Score=721.74  Aligned_cols=398  Identities=33%  Similarity=0.544  Sum_probs=373.6

Q ss_pred             CCEEEEEEEEECCCCCCHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHCCCHHHHHHHCHHH
Q ss_conf             83899945477188989999999998298655307887550048666141515654553457957678989998528999
Q gi|254780533|r    2 RRVVVTGLGMITPLGCGVDVSWSRLIAGEVGIRHLDQKFDLEGLSSKIAGLIPVGNGSDGTFNYEDWILSSDLRKIDQFI   81 (423)
Q Consensus         2 ~rVaItG~g~v~p~G~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~ag~i~~~~~~~~~f~~~~~i~~~~~~~~d~~~   81 (423)
T Consensus         1 rRVvItG~g~~~P~g~~~~~~w~~L~~G~s~i~~~-~~~~~~~~~~~~~g~v~-------~f~~~~~~~~~~~~~~d~~~   72 (399)
T cd00832           1 RRAVVTGIGVVAPNGLGVEEYWKAVLDGRSGLGPI-TRFDPSGYPARLAGEVP-------DFDAAEHLPGRLLPQTDRMT   72 (399)
T ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHCCCCEEECC-CCCCCCCCCCCEEEECC-------CCCHHHCCCHHHHHHCCHHH
T ss_conf             92999716778979599999999997299835427-75575568776456779-------87801168988987469999


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHCCCCCEEECCCCHHCCCCCCCCCCCC
Q ss_conf             99999976322100268100268653110244556860000001234554321001210000132101022333332110
Q gi|254780533|r   82 LYGMVASDMALADSGWAPKTDKDRNSTGVVFGSGMGGLNRIVESSNVLRDGGPRKISPFTVPGSIISLLSGNISIRNQLR  161 (423)
Q Consensus        82 ~l~l~aa~~Al~dAGl~~~~~~~~~r~gv~~Gs~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~~l~  161 (423)
T Consensus        73 ~~~l~aa~~Al~dAGl~~~~-~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~gl~  151 (399)
T cd00832          73 RLALAAADWALADAGVDPAA-LPPYDMGVVTASAAGGFEFGQRELQKLWSKGPRHVSAYQSFAWFYAVNTGQISIRHGMR  151 (399)
T ss_pred             HHHHHHHHHHHHHCCCCHHH-CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             99999999988860998456-48774289994256760255899999974185425611213566778888999982898


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCEEECHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf             00113334444322344332331335602100121011223222234332101245666668422002220346765332
Q gi|254780533|r  162 GPNHAVTTACSSGAHAIGDASRLIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRFNDDPTRASRPFDQDRDGFVMG  241 (423)
Q Consensus       162 Gp~~ti~~aCsSsl~Ai~~A~~~i~~G~~d~aivGg~d~~~~~~~~~~f~~~~~ls~~~~~~p~~~~rpFd~~~dG~~~g  241 (423)
T Consensus       152 Gp~~tv~tacsssl~Ai~~A~~~i~~G-~d~~i~Gg~~~~l~p~~~~~~~~~g~ls~--~~~p~~~~rPFD~~r~G~v~G  228 (399)
T cd00832         152 GPSGVVVAEQAGGLDALAQARRLVRRG-TPLVVSGGVDSALCPWGWVAQLSSGRLST--SDDPARAYLPFDAAAAGYVPG  228 (399)
T ss_pred             CCCCCHHCCCCHHHHHHHHHHHHHHCC-CCHHHCCCCCEEECCHHHHHHHHHHHHCC--CCCCCCCCCCCCCCCCCEEEC
T ss_conf             874102114707999999999998769-72012177404516288999987566456--999986504776789806642


Q ss_pred             CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCEEEECCCCCC-CCC
Q ss_conf             4404541023454443322333321100121111221000121100133210133323222333310210367654-432
Q gi|254780533|r  242 EGAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITMPPEDGNGAYRCMSSAIARAKLLPSDIDYINAHGTSTI-ADT  320 (423)
Q Consensus       242 EGa~~lvLe~~~~A~~rg~~i~a~i~G~~~~~d~~~~~~~~~~~~~~~~~i~~aL~~a~i~~~di~~i~~hgtgt~-~D~  320 (423)
T Consensus       229 EGa~~lvLe~~~~A~~rGa~i~a~i~G~~~~~d~~~~---~~~~~~~~~a~~~Al~~agi~p~~I~yI~aHgTGT~~gD~  305 (399)
T cd00832         229 EGGAILVLEDAAAARERGARVYGEIAGYAATFDPPPG---SGRPPGLARAIRLALADAGLTPEDVDVVFADAAGVPELDR  305 (399)
T ss_pred             CCEEEEEECCHHHHHHCCCEEEEEEEEEEECCCCCCC---CCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCH
T ss_conf             7667888454988987889599999888984899899---9897999999999999719996705699983375855699


Q ss_pred             CHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             01356776420024341113701221223689999999999999870832775888788744886507886724788789
Q gi|254780533|r  321 IELGAVERLMGDSCYHVSMSSTKSAMGHLLGAAGAVEAAICNLAIRDGIVPATLNLDNPAKKTFIDLVPHRAIKKNVNVA  400 (423)
Q Consensus       321 ~E~~al~~~f~~~~~~~~v~s~K~~~Gh~~~asG~~~l~~~~l~l~~~~ipp~~~~~~~~~~~~~~~v~~~~~~~~~~~a  400 (423)
T Consensus       306 ~E~~Ai~~~fg~~--~~pv~S~K~~iGH~~~AaG~~~~i~~ll~l~~g~ippt~n~~~~~p~~~l~~v~~~~~~~~~~~a  383 (399)
T cd00832         306 AEAAALAAVFGPR--GVPVTAPKTMTGRLYAGGAPLDVATALLALRDGVIPPTVNVTDVPPAYGLDLVTGRPRPAALRTA  383 (399)
T ss_pred             HHHHHHHHHHCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf             9999999996699--98789954221106999999999999999835961989998999988885237899878998999


Q ss_pred             EEECCCCCCEEEEEEE
Q ss_conf             9944567773589999
Q gi|254780533|r  401 MSNSFGFGGTNVSLVF  416 (423)
Q Consensus       401 l~~s~G~gG~n~~~il  416 (423)
T Consensus       384 l~nsfGfGG~Na~lvl  399 (399)
T cd00832         384 LVLARGRGGFNSALVV  399 (399)
T ss_pred             EEECCCCCCEEEEEEC
T ss_conf             9944056803268969