HHsearch alignment for GI: 254780533 and conserved domain: cd00832
>cd00832 CLF Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria. CLFs have been shown to have decarboxylase activity towards malonyl-acyl carrier protein (ACP). CLFs are similar to other elongation ketosynthase domains, but their active site cysteine is replaced by a conserved glutamine.
Probab=100.00 E-value=0 Score=721.74 Aligned_cols=398 Identities=33% Similarity=0.544 Sum_probs=373.6
Q ss_pred CCEEEEEEEEECCCCCCHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHCCCHHHHHHHCHHH
Q ss_conf 83899945477188989999999998298655307887550048666141515654553457957678989998528999
Q gi|254780533|r 2 RRVVVTGLGMITPLGCGVDVSWSRLIAGEVGIRHLDQKFDLEGLSSKIAGLIPVGNGSDGTFNYEDWILSSDLRKIDQFI 81 (423)
Q Consensus 2 ~rVaItG~g~v~p~G~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~ag~i~~~~~~~~~f~~~~~i~~~~~~~~d~~~ 81 (423)
T Consensus 1 rRVvItG~g~~~P~g~~~~~~w~~L~~G~s~i~~~-~~~~~~~~~~~~~g~v~-------~f~~~~~~~~~~~~~~d~~~ 72 (399)
T cd00832 1 RRAVVTGIGVVAPNGLGVEEYWKAVLDGRSGLGPI-TRFDPSGYPARLAGEVP-------DFDAAEHLPGRLLPQTDRMT 72 (399)
T ss_pred CCEEEECCEEECCCCCCHHHHHHHHHCCCCEEECC-CCCCCCCCCCCEEEECC-------CCCHHHCCCHHHHHHCCHHH
T ss_conf 92999716778979599999999997299835427-75575568776456779-------87801168988987469999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHCCCCCEEECCCCHHCCCCCCCCCCCC
Q ss_conf 99999976322100268100268653110244556860000001234554321001210000132101022333332110
Q gi|254780533|r 82 LYGMVASDMALADSGWAPKTDKDRNSTGVVFGSGMGGLNRIVESSNVLRDGGPRKISPFTVPGSIISLLSGNISIRNQLR 161 (423)
Q Consensus 82 ~l~l~aa~~Al~dAGl~~~~~~~~~r~gv~~Gs~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~~l~ 161 (423)
T Consensus 73 ~~~l~aa~~Al~dAGl~~~~-~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~gl~ 151 (399)
T cd00832 73 RLALAAADWALADAGVDPAA-LPPYDMGVVTASAAGGFEFGQRELQKLWSKGPRHVSAYQSFAWFYAVNTGQISIRHGMR 151 (399)
T ss_pred HHHHHHHHHHHHHCCCCHHH-CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999988860998456-48774289994256760255899999974185425611213566778888999982898
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCEEECHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 00113334444322344332331335602100121011223222234332101245666668422002220346765332
Q gi|254780533|r 162 GPNHAVTTACSSGAHAIGDASRLIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRFNDDPTRASRPFDQDRDGFVMG 241 (423)
Q Consensus 162 Gp~~ti~~aCsSsl~Ai~~A~~~i~~G~~d~aivGg~d~~~~~~~~~~f~~~~~ls~~~~~~p~~~~rpFd~~~dG~~~g 241 (423)
T Consensus 152 Gp~~tv~tacsssl~Ai~~A~~~i~~G-~d~~i~Gg~~~~l~p~~~~~~~~~g~ls~--~~~p~~~~rPFD~~r~G~v~G 228 (399)
T cd00832 152 GPSGVVVAEQAGGLDALAQARRLVRRG-TPLVVSGGVDSALCPWGWVAQLSSGRLST--SDDPARAYLPFDAAAAGYVPG 228 (399)
T ss_pred CCCCCHHCCCCHHHHHHHHHHHHHHCC-CCHHHCCCCCEEECCHHHHHHHHHHHHCC--CCCCCCCCCCCCCCCCCEEEC
T ss_conf 874102114707999999999998769-72012177404516288999987566456--999986504776789806642
Q ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCEEEECCCCCC-CCC
Q ss_conf 4404541023454443322333321100121111221000121100133210133323222333310210367654-432
Q gi|254780533|r 242 EGAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITMPPEDGNGAYRCMSSAIARAKLLPSDIDYINAHGTSTI-ADT 320 (423)
Q Consensus 242 EGa~~lvLe~~~~A~~rg~~i~a~i~G~~~~~d~~~~~~~~~~~~~~~~~i~~aL~~a~i~~~di~~i~~hgtgt~-~D~ 320 (423)
T Consensus 229 EGa~~lvLe~~~~A~~rGa~i~a~i~G~~~~~d~~~~---~~~~~~~~~a~~~Al~~agi~p~~I~yI~aHgTGT~~gD~ 305 (399)
T cd00832 229 EGGAILVLEDAAAARERGARVYGEIAGYAATFDPPPG---SGRPPGLARAIRLALADAGLTPEDVDVVFADAAGVPELDR 305 (399)
T ss_pred CCEEEEEECCHHHHHHCCCEEEEEEEEEEECCCCCCC---CCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCH
T ss_conf 7667888454988987889599999888984899899---9897999999999999719996705699983375855699
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 01356776420024341113701221223689999999999999870832775888788744886507886724788789
Q gi|254780533|r 321 IELGAVERLMGDSCYHVSMSSTKSAMGHLLGAAGAVEAAICNLAIRDGIVPATLNLDNPAKKTFIDLVPHRAIKKNVNVA 400 (423)
Q Consensus 321 ~E~~al~~~f~~~~~~~~v~s~K~~~Gh~~~asG~~~l~~~~l~l~~~~ipp~~~~~~~~~~~~~~~v~~~~~~~~~~~a 400 (423)
T Consensus 306 ~E~~Ai~~~fg~~--~~pv~S~K~~iGH~~~AaG~~~~i~~ll~l~~g~ippt~n~~~~~p~~~l~~v~~~~~~~~~~~a 383 (399)
T cd00832 306 AEAAALAAVFGPR--GVPVTAPKTMTGRLYAGGAPLDVATALLALRDGVIPPTVNVTDVPPAYGLDLVTGRPRPAALRTA 383 (399)
T ss_pred HHHHHHHHHHCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 9999999996699--98789954221106999999999999999835961989998999988885237899878998999
Q ss_pred EEECCCCCCEEEEEEE
Q ss_conf 9944567773589999
Q gi|254780533|r 401 MSNSFGFGGTNVSLVF 416 (423)
Q Consensus 401 l~~s~G~gG~n~~~il 416 (423)
T Consensus 384 l~nsfGfGG~Na~lvl 399 (399)
T cd00832 384 LVLARGRGGFNSALVV 399 (399)
T ss_pred EEECCCCCCEEEEEEC
T ss_conf 9944056803268969