HHsearch alignment for GI: 254780533 and conserved domain: cd00833

>cd00833 PKS polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations. PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits.
Probab=100.00  E-value=0  Score=694.28  Aligned_cols=397  Identities=30%  Similarity=0.475  Sum_probs=355.7

Q ss_pred             CCEEEEEEEEECCCCCCHHHHHHHHHCCCCCCEECC-CCCCCCCCCCC----------CCEECCCCCCCCCCCCHHHC-C
Q ss_conf             838999454771889899999999982986553078-87550048666----------14151565455345795767-8
Q gi|254780533|r    2 RRVVVTGLGMITPLGCGVDVSWSRLIAGEVGIRHLD-QKFDLEGLSSK----------IAGLIPVGNGSDGTFNYEDW-I   69 (423)
Q Consensus         2 ~rVaItG~g~v~p~G~~~~~~w~~L~~G~s~i~~~~-~~~~~~~~~~~----------~ag~i~~~~~~~~~f~~~~~-i   69 (423)
T Consensus         1 e~IaItG~g~~~P~g~~~~~fw~~L~~G~~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~fd~~~f~i   76 (421)
T cd00833           1 EPIAIVGMACRFPGAADPDEFWENLLEGRDAISEIPEDRWDADGYYPDPGKPGKTYTRRGGFLDD----VDAFDAAFFGI   76 (421)
T ss_pred             CCEEEEEEEEECCCCCCHHHHHHHHHCCCCEEECCCHHHCCHHHCCCCCCCCCCCCCCCCEECCC----CCCCCHHHCCC
T ss_conf             98999810678989999999999998299877528957758432578643468865430345378----34268866599


Q ss_pred             CHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHCCCCCEEECCCCHH
Q ss_conf             98999852899999999976322100268100268653110244556860000001234554321001210000132101
Q gi|254780533|r   70 LSSDLRKIDQFILYGMVASDMALADSGWAPKTDKDRNSTGVVFGSGMGGLNRIVESSNVLRDGGPRKISPFTVPGSIISL  149 (423)
Q Consensus        70 ~~~~~~~~d~~~~l~l~aa~~Al~dAGl~~~~~~~~~r~gv~~Gs~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (423)
T Consensus        77 ~~~ea~~mdp~~rl~L~~a~eAl~dAG~~~~~-~~~~r~GV~iG~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~  148 (421)
T cd00833          77 SPREAEAMDPQQRLLLEVAWEALEDAGYSPES-LAGSRTGVFVGASSSDY-------LELLARDPDEIDAYAATGTSRAF  148 (421)
T ss_pred             CHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHH-CCCCCEEEEECCCCCCH-------HHHHHCCCCCCCCCCCCCCCHHH
T ss_conf             99999871999999999999999752898346-48863499966666647-------88974275657853013543117


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCEEECHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf             02233333211000113334444322344332331335602100121011223222234332101245666668422002
Q gi|254780533|r  150 LSGNISIRNQLRGPNHAVTTACSSGAHAIGDASRLIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRFNDDPTRASR  229 (423)
Q Consensus       150 ~a~~is~~~~l~Gp~~ti~~aCsSsl~Ai~~A~~~i~~G~~d~aivGg~d~~~~~~~~~~f~~~~~ls~~~~~~p~~~~r  229 (423)
T Consensus       149 ~a~~is~~~~~~Gp~~~v~tACaSsl~Ai~~A~~~i~~G~~d~ai~Gg~~~~~~~~~~~~~~~~~~ls~------~~~~r  222 (421)
T cd00833         149 LANRISYFFDLRGPSLTVDTACSSSLVALHLACQSLRSGECDLALVGGVNLILSPDMFVGFSKAGMLSP------DGRCR  222 (421)
T ss_pred             HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECEEEEECCHHHHHHHHHCCCCCC------CCCCC
T ss_conf             999999996899960033536279999999999998579943544120003158689999863578689------99856


Q ss_pred             HHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCEE
Q ss_conf             22034676533244045410234544433223333211001211112210001211001332101333232223333102
Q gi|254780533|r  230 PFDQDRDGFVMGEGAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITMPPEDGNGAYRCMSSAIARAKLLPSDIDYI  309 (423)
Q Consensus       230 pFd~~~dG~~~gEGa~~lvLe~~~~A~~rg~~i~a~i~G~~~~~d~~~~~~~~~~~~~~~~~i~~aL~~a~i~~~di~~i  309 (423)
T Consensus       223 pFD~~~~G~v~gEGa~~lvLe~~~~A~~~g~~I~a~i~G~g~~~dg~~~~~~~P~~~~~~~~~~~al~~agi~~~~i~yi  302 (421)
T cd00833         223 PFDADADGYVRGEGVGVVVLKRLSDALRDGDRIYAVIRGSAVNQDGRTKGITAPSGEAQAALIRRAYARAGVDPSDIDYV  302 (421)
T ss_pred             CCCCCCCCCCCCCCEEEECCCCHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             78889998655575135436878999876994799998999806897778888756689999999999729994412089


Q ss_pred             EECCCCCC-CCCCHHHHHHHHHHCCC---CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             10367654-43201356776420024---341113701221223689999999999999870832775888788744886
Q gi|254780533|r  310 NAHGTSTI-ADTIELGAVERLMGDSC---YHVSMSSTKSAMGHLLGAAGAVEAAICNLAIRDGIVPATLNLDNPAKKTFI  385 (423)
Q Consensus       310 ~~hgtgt~-~D~~E~~al~~~f~~~~---~~~~v~s~K~~~Gh~~~asG~~~l~~~~l~l~~~~ipp~~~~~~~~~~~~~  385 (423)
T Consensus       303 eaHgtgT~~gD~~E~~ai~~~f~~~~~~~~~~~v~S~Ks~~GH~~~AaG~~~~i~~~lal~~~~iPpt~n~~~~~p~~~~  382 (421)
T cd00833         303 EAHGTGTPLGDPIEVEALAKVFGGSRSADQPLLIGSVKSNIGHLEAAAGLAGLIKVVLALEHGVIPPNLHFETPNPKIDF  382 (421)
T ss_pred             EEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf             97447686669999999999961257777863023543453433576799999999999855982898998999988984


Q ss_pred             C----CCCCCCCCC----CCCEEEEECCCCCCEEEEEEE
Q ss_conf             5----078867247----887899944567773589999
Q gi|254780533|r  386 D----LVPHRAIKK----NVNVAMSNSFGFGGTNVSLVF  416 (423)
Q Consensus       386 ~----~v~~~~~~~----~~~~al~~s~G~gG~n~~~il  416 (423)
T Consensus       383 ~~~~~~v~~~~~~w~~~~~~r~a~vnsfgfGG~Na~lvl  421 (421)
T cd00833         383 EESPLRVPTEARPWPAPAGPRRAGVSSFGFGGTNAHVIL  421 (421)
T ss_pred             CCCCEEECCCCCCCCCCCCCEEEEEECCCCCCEEEEEEC
T ss_conf             447635107772488889844999906158874579979