HHsearch alignment for GI: 254780533 and conserved domain: pfam00109
>pfam00109 ketoacyl-synt Beta-ketoacyl synthase, N-terminal domain. The structure of beta-ketoacyl synthase is similar to that of the thiolase family (pfam00108) and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. The N-terminal domain contains most of the structures involved in dimer formation and also the active site cysteine.
Probab=100.00 E-value=0 Score=363.61 Aligned_cols=241 Identities=36% Similarity=0.523 Sum_probs=210.8
Q ss_pred CCEEEEEEEEECCCCCCHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHC-CCHHHHHHHCHH
Q ss_conf 8389994547718898999999999829865530788755004866614151565455345795767-898999852899
Q gi|254780533|r 2 RRVVVTGLGMITPLGCGVDVSWSRLIAGEVGIRHLDQKFDLEGLSSKIAGLIPVGNGSDGTFNYEDW-ILSSDLRKIDQF 80 (423)
Q Consensus 2 ~rVaItG~g~v~p~G~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~ag~i~~~~~~~~~f~~~~~-i~~~~~~~~d~~ 80 (423)
T Consensus 2 ~~VvITG~G~vtp~G~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~~i~~~~-----~~~~~~~~~~~~~~~~d~~ 76 (243)
T pfam00109 2 EPVAITGMGCRFPGGVGPEEFWELLLAGRDAIREFPADLSGLYPPSRVAGEIYGFD-----FDAAFFGISPREAEAMDPQ 76 (243)
T ss_pred CCEEEECCEEECCCCCCHHHHHHHHHCCCCEEEECCCHHHHCCCCCCCCEECCCCC-----CCHHHCCCCHHHHHHCCHH
T ss_conf 99999866889979899999999998599888746950644479876010146778-----7811159899999854999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHCCCCCEEECCCCHHCCCCCCCCCCC
Q ss_conf 99999997632210026810026865311024455686000000123455432100121000013210102233333211
Q gi|254780533|r 81 ILYGMVASDMALADSGWAPKTDKDRNSTGVVFGSGMGGLNRIVESSNVLRDGGPRKISPFTVPGSIISLLSGNISIRNQL 160 (423)
Q Consensus 81 ~~l~l~aa~~Al~dAGl~~~~~~~~~r~gv~~Gs~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~~l 160 (423)
T Consensus 77 ~~~~~~aa~~Al~dAGl~~~~~~~~~~~gv~~G~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~~g~ 153 (243)
T pfam00109 77 QRLALEAAWEALEDAGLDPASLRGSDRTGVFVGSGSGDYAEL---QALDSAGGPRRGSPYLTGAWMPSVAAGRISYRLGL 153 (243)
T ss_pred HHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEEECCCCHHHH---HHHHCCCCCCCCCCEEECCCCCCHHHHHHHHHHCC
T ss_conf 999999999999984998467278872899998647648999---97630367433464110564511788899867415
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCEEECHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 00011333444432234433233133560210012101122322223433210124566666842200222034676533
Q gi|254780533|r 161 RGPNHAVTTACSSGAHAIGDASRLIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRFNDDPTRASRPFDQDRDGFVM 240 (423)
Q Consensus 161 ~Gp~~ti~~aCsSsl~Ai~~A~~~i~~G~~d~aivGg~d~~~~~~~~~~f~~~~~ls~~~~~~p~~~~rpFd~~~dG~~~ 240 (423)
T Consensus 154 ~Gp~~t~~~ACaSg~~AI~~A~~~I~~G~~d~~i~Gg~~~~~~~~~~~~f~~~~a~~~~-----~~~~rpfd~~~~G~v~ 228 (243)
T pfam00109 154 RGPSVTVDTACSSSLVALHAAVRSIRRGECDLALAGGVEAPLTPGGFAGFSAAGALLSP-----DGPCKAFDPFADGFVR 228 (243)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHCCCCCCC-----CCCCCCCCCCCCCEEE
T ss_conf 79864665520789999999997533698387999784155697899999974785797-----9998887899996553
Q ss_pred CCCCEEEECCCCCCC
Q ss_conf 244045410234544
Q gi|254780533|r 241 GEGAGALVLEDLEHA 255 (423)
Q Consensus 241 gEGa~~lvLe~~~~A 255 (423)
T Consensus 229 GEGaa~lvLE~~e~A 243 (243)
T pfam00109 229 GEGVGAVLLKELSEA 243 (243)
T ss_pred EEEEEEEEEEEHHHC
T ss_conf 614998999767639