RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780533|ref|YP_003064946.1| 3-oxoacyl-(acyl carrier
protein) synthase II [Candidatus Liberibacter asiaticus str. psy62]
(423 letters)
>gnl|CDD|180925 PRK07314, PRK07314, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 411
Score = 665 bits (1718), Expect = 0.0
Identities = 235/421 (55%), Positives = 311/421 (73%), Gaps = 11/421 (2%)
Query: 1 MRRVVVTGLGMITPLGCGVDVSWSRLIAGEVGIRHLDQKFDLEGLSSKIAGLIPVGNGSD 60
RRVVVTGLG ++PLG V+ +W L+AG+ GI + FD L+ KIAG +
Sbjct: 1 KRRVVVTGLGAVSPLGNDVESTWKNLLAGKSGIGPIT-HFDTSDLAVKIAGEVK------ 53
Query: 61 GTFNYEDWILSSDLRKIDQFILYGMVASDMALADSGWAPKTDKDRNSTGVVFGSGMGGLN 120
FN +D++ + R++D+FI YG+ A+ A+ D+G T+++ + GV+ GSG+GGL
Sbjct: 54 -DFNPDDYMSRKEARRMDRFIQYGIAAAKQAVEDAGLEI-TEENADRIGVIIGSGIGGLE 111
Query: 121 RIVESSNVLRDGGPRKISPFTVPGSIISLLSGNISIRNQLRGPNHAVTTACSSGAHAIGD 180
I E L + GPR++SPF VP +II++ +G++SIR +GPNH++ TAC++GAHAIGD
Sbjct: 112 TIEEQHITLLEKGPRRVSPFFVPMAIINMAAGHVSIRYGAKGPNHSIVTACATGAHAIGD 171
Query: 181 ASRLIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRFNDDPTRASRPFDQDRDGFVM 240
A+RLIA+GDADVMVAGGAEA I LG+A FAA RALSTR NDDP RASRPFD+DRDGFVM
Sbjct: 172 AARLIAYGDADVMVAGGAEAAITPLGIAGFAAARALSTR-NDDPERASRPFDKDRDGFVM 230
Query: 241 GEGAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITMPPEDGNGAYRCMSSAIARAK 300
GEGAG LVLE+LEHAKARGAKIY+E++GYG++GDA+H+T P DG GA R M A+ A
Sbjct: 231 GEGAGILVLEELEHAKARGAKIYAEVVGYGMTGDAYHMTAPAPDGEGAARAMKLALKDAG 290
Query: 301 LLPSDIDYINAHGTST-IADTIELGAVERLMGDSCYHVSMSSTKSAMGHLLGAAGAVEAA 359
+ P DIDYINAHGTST D E A++R+ G+ Y V++SSTKS GHLLGAAGAVEA
Sbjct: 291 INPEDIDYINAHGTSTPAGDKAETQAIKRVFGEHAYKVAVSSTKSMTGHLLGAAGAVEAI 350
Query: 360 ICNLAIRDGIVPATLNLDNPAKKTFIDLVPHRAIKKNVNVAMSNSFGFGGTNVSLVFRKF 419
LAIRD ++P T+NLDNP ++ +D VP+ A ++ ++ A+SNSFGFGGTN SLVF+++
Sbjct: 351 FSVLAIRDQVIPPTINLDNPDEECDLDYVPNEARERKIDYALSNSFGFGGTNASLVFKRY 410
Query: 420 Q 420
+
Sbjct: 411 E 411
>gnl|CDD|163158 TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II.
FabB sequences should fall well below the noise cutoff
of this model.
Length = 407
Score = 624 bits (1611), Expect = e-179
Identities = 238/417 (57%), Positives = 302/417 (72%), Gaps = 11/417 (2%)
Query: 2 RRVVVTGLGMITPLGCGVDVSWSRLIAGEVGIRHLDQKFDLEGLSSKIAGLIPVGNGSDG 61
RRVVVTGLG +TPLG GV+ W L+AG+ GI + +FD L KIAG +
Sbjct: 1 RRVVVTGLGAVTPLGNGVEEFWENLLAGKSGIGPIT-RFDASDLPVKIAGEVK------- 52
Query: 62 TFNYEDWILSSDLRKIDQFILYGMVASDMALADSGWAPKTDKDRNSTGVVFGSGMGGLNR 121
F+ ED+I + R++D+FI Y + A+ A+ DSG ++D GV+ GSG+GGL
Sbjct: 53 DFDPEDYIDKKEARRMDRFIQYALAAAKEAVEDSGL-DIEEEDAERVGVIIGSGIGGLET 111
Query: 122 IVESSNVLRDGGPRKISPFTVPGSIISLLSGNISIRNQLRGPNHAVTTACSSGAHAIGDA 181
I E VL + GPR++SPF +P SII++ +G ISIR +GPNHAV TAC++G HAIGDA
Sbjct: 112 IEEQHIVLLEKGPRRVSPFFIPMSIINMAAGQISIRYGAKGPNHAVVTACATGTHAIGDA 171
Query: 182 SRLIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRFNDDPTRASRPFDQDRDGFVMG 241
RLI GDADVM+AGGAEA I LG+A FAA +ALSTR NDDP +ASRPFD+DRDGFVMG
Sbjct: 172 FRLIQRGDADVMIAGGAEAAITPLGIAGFAAMKALSTR-NDDPEKASRPFDKDRDGFVMG 230
Query: 242 EGAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITMPPEDGNGAYRCMSSAIARAKL 301
EGAG LVLE+LEHAKARGAKIY+EI+GYG+SGDA+HIT P +G GA R M +A+ A +
Sbjct: 231 EGAGVLVLEELEHAKARGAKIYAEIVGYGMSGDAYHITAPAPEGEGAARAMRAALKDAGI 290
Query: 302 LPSDIDYINAHGTST-IADTIELGAVERLMGDSCYHVSMSSTKSAMGHLLGAAGAVEAAI 360
P D+DYINAHGTST + D E A++R+ GD Y +++SSTKS GHLLGAAGA+EA
Sbjct: 291 NPEDVDYINAHGTSTPLGDKAETKAIKRVFGDHAYKLAVSSTKSMTGHLLGAAGAIEAIF 350
Query: 361 CNLAIRDGIVPATLNLDNPAKKTFIDLVPHRAIKKNVNVAMSNSFGFGGTNVSLVFR 417
LAIRDG+VP T+NLDNP + +D VP+ A ++ ++ A+SNSFGFGG N SLVF+
Sbjct: 351 TVLAIRDGVVPPTINLDNPDPECDLDYVPNEARERKIDYALSNSFGFGGHNASLVFK 407
>gnl|CDD|180532 PRK06333, PRK06333, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 424
Score = 511 bits (1319), Expect = e-145
Identities = 210/424 (49%), Positives = 293/424 (69%), Gaps = 5/424 (1%)
Query: 1 MRRVVVTGLGMITPLGCGVDVSWSRLIAGEVGIRHLDQKFDLEGLSSKIAGLIP-VGNGS 59
+R+VVTG+G ++PLGCGV+ W RL+AG+ GIR L F + L++KI G +P + +
Sbjct: 3 KKRIVVTGMGAVSPLGCGVETFWQRLLAGQSGIRTL-TDFPVGDLATKIGGQVPDLAEDA 61
Query: 60 DGTFNYEDWILSSDLRKIDQFILYGMVASDMALADSGWAPKTDKDRNSTGVVFGSGMGGL 119
+ F+ + ++ D RK+D+FIL+ M A+ ALA +GW P T +DR T + GSG+GG
Sbjct: 62 EAGFDPDRYLDPKDQRKMDRFILFAMAAAKEALAQAGWDPDTLEDRERTATIIGSGVGGF 121
Query: 120 NRIVESSNVLRDGGPRKISPFTVPGSIISLLSGNISIRNQLRGPNHAVTTACSSGAHAIG 179
I E+ L GPR++SPFT+P + ++ +G++SIR +GP A TAC++G AIG
Sbjct: 122 PAIAEAVRTLDSRGPRRLSPFTIPSFLTNMAAGHVSIRYGFKGPLGAPVTACAAGVQAIG 181
Query: 180 DASRLIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRFNDDPTRASRPFDQDRDGFV 239
DA+RLI G+ADV V GG EA I R+ +A FAA RALSTRFND P +ASRPFD+DRDGFV
Sbjct: 182 DAARLIRSGEADVAVCGGTEAAIDRVSLAGFAAARALSTRFNDAPEQASRPFDRDRDGFV 241
Query: 240 MGEGAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITMPPEDGNGAYRCMSSAIARA 299
MGEGAG LV+E LEHA ARGA +E++GYG S DA+H+T PEDG GA R M A+ +A
Sbjct: 242 MGEGAGILVIETLEHALARGAPPLAELVGYGTSADAYHMTAGPEDGEGARRAMLIALRQA 301
Query: 300 KLLPSDIDYINAHGTST-IADTIELGAVERLMGDSCYHVSMSSTKSAMGHLLGAAGAVEA 358
+ P ++ ++NAH TST + D E+ A++++ G +++SSTKSA GHLLGAAG VEA
Sbjct: 302 GIPPEEVQHLNAHATSTPVGDLGEVAAIKKVFGHV-SGLAVSSTKSATGHLLGAAGGVEA 360
Query: 359 AICNLAIRDGIVPATLNLDNP-AKKTFIDLVPHRAIKKNVNVAMSNSFGFGGTNVSLVFR 417
LA+RD I P TLNL+NP +D+V ++A +++ A+SN FGFGG N S++FR
Sbjct: 361 IFTILALRDQIAPPTLNLENPDPAAEGLDVVANKARPMDMDYALSNGFGFGGVNASILFR 420
Query: 418 KFQD 421
+++
Sbjct: 421 RWEP 424
>gnl|CDD|178430 PLN02836, PLN02836, 3-oxoacyl-[acyl-carrier-protein] synthase.
Length = 437
Score = 485 bits (1251), Expect = e-138
Identities = 223/432 (51%), Positives = 291/432 (67%), Gaps = 21/432 (4%)
Query: 2 RRVVVTGLGMITPLGCGVDVSWSRLIAGEVGIRHL-------------DQKFDLEGLSSK 48
RRVVVTGLG++TPLGCGV+ +W RLIAGE G+R L Q + L+ L S+
Sbjct: 6 RRVVVTGLGLVTPLGCGVETTWRRLIAGECGVRALTQDDLKMKSEDEETQLYTLDQLPSR 65
Query: 49 IAGLIPVGNGSDGTFNYEDWILSSDLRKIDQFILYGMVASDMALADSGWAPKTDKDRNST 108
+A L+P G G G F+ E W+ S R +FI Y + A+D AL+D+ W P D+ + T
Sbjct: 66 VAALVPRGTGP-GDFDEELWLNS---RSSSRFIGYALCAADEALSDARWLPSEDEAKERT 121
Query: 109 GVVFGSGMGGLNRIVESSNVLRDGGPRKISPFTVPGSIISLLSGNISIRNQLRGPNHAVT 168
GV G G+G + I+E++ ++ + R++SPF VP +I++ +G++SIR +GPNHA
Sbjct: 122 GVSIGGGIGSITDILEAAQLICEKRLRRLSPFFVPRILINMAAGHVSIRYGFQGPNHAAV 181
Query: 169 TACSSGAHAIGDASRLIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRFNDDPTRAS 228
TAC++GAH+IGDA R+I FGDADVMVAGG E+ I L +A F+ RALST+FN PT AS
Sbjct: 182 TACATGAHSIGDAFRMIQFGDADVMVAGGTESSIDALSIAGFSRSRALSTKFNSCPTEAS 241
Query: 229 RPFDQDRDGFVMGEGAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITMPPEDGNGA 288
RPFD DRDGFV+GEGAG LVLE+LEHAK RGAKIY+E+ GYG+SGDA HIT P EDG GA
Sbjct: 242 RPFDCDRDGFVIGEGAGVLVLEELEHAKRRGAKIYAEVRGYGMSGDAHHITQPHEDGRGA 301
Query: 289 YRCMSSAIARAKLLPSDIDYINAHGTST-IADTIELGAVERLMGDSCY--HVSMSSTKSA 345
M+ A+ ++ L P+ +DY+NAH TST + D +E A++ + + ++ SSTK A
Sbjct: 302 VLAMTRALQQSGLHPNQVDYVNAHATSTPLGDAVEARAIKTVFSEHATSGGLAFSSTKGA 361
Query: 346 MGHLLGAAGAVEAAICNLAIRDGIVPATLNLDNPAKKTFIDLVPHRAIKKN-VNVAMSNS 404
GHLLGAAGAVEA LAI GI P TLNL+ P VP A K + A+SNS
Sbjct: 362 TGHLLGAAGAVEAIFSVLAIHHGIAPPTLNLERPDPIFDDGFVPLTASKAMLIRAALSNS 421
Query: 405 FGFGGTNVSLVF 416
FGFGGTN SL+F
Sbjct: 422 FGFGGTNASLLF 433
>gnl|CDD|185415 PTZ00050, PTZ00050, 3-oxoacyl-acyl carrier protein synthase;
Provisional.
Length = 421
Score = 437 bits (1126), Expect = e-123
Identities = 178/421 (42%), Positives = 266/421 (63%), Gaps = 12/421 (2%)
Query: 11 MITPLGCGVDVSWSRLIAGEVGIRHL------DQKFDLEGLS-SKIAGLIPVGNGSDGTF 63
++TPLG G + +W LIAG+ GIR L E + + +P ++
Sbjct: 1 VVTPLGVGAESTWEALIAGKSGIRKLTEFPKFLPDCIPEQKALENLVAAMPCQIAAEVDQ 60
Query: 64 NYEDWILSSDLRKIDQFILYGMVASDMALADSGWAPKTDKDRNSTGVVFGSGMGGLNRIV 123
+ D + ++ + + M A+ ALAD+ ++KD+ GV GSG+G L +
Sbjct: 61 SEFDPSDFAPTKRESRATHFAMAAAREALADAKLDILSEKDQERIGVNIGSGIGSLADLT 120
Query: 124 ESSNVLRDGGPRKISPFTVPGSIISLLSGNISIRNQLRGPNHAVTTACSSGAHAIGDASR 183
+ L + G ++SP+ +P + ++ +G ++I+++L+GP+ + TAC++GAH IG+A R
Sbjct: 121 DEMKTLYEKGHSRVSPYFIPKILGNMAAGLVAIKHKLKGPSGSAVTACATGAHCIGEAFR 180
Query: 184 LIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRFNDDPTRASRPFDQDRDGFVMGEG 243
I +G+AD+M+ GG EA I + A F+ RAL T++NDDP RASRPFD+DR GFVMGEG
Sbjct: 181 WIKYGEADIMICGGTEASITPVSFAGFSRMRALCTKYNDDPQRASRPFDKDRAGFVMGEG 240
Query: 244 AGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITMPPEDGNGAYRCMSSAIARAKLLP 303
AG LVLE+LEHA RGAKIY+EI GYG S DA HIT P DG GA RCM +A+ +
Sbjct: 241 AGILVLEELEHALRRGAKIYAEIRGYGSSSDAHHITAPHPDGRGARRCMENALKDGANIN 300
Query: 304 -SDIDYINAHGTST-IADTIELGAVERLMGDS-CYHVSMSSTKSAMGHLLGAAGAVEAAI 360
+D+DY+NAH TST I D IEL A++++ GDS + +SSTK +GHLLGAAGAVE+ +
Sbjct: 301 INDVDYVNAHATSTPIGDKIELKAIKKVFGDSGAPKLYVSSTKGGLGHLLGAAGAVESIV 360
Query: 361 CNLAIRDGIVPATLNLDNPAKKTFIDLVPHRAI--KKNVNVAMSNSFGFGGTNVSLVFRK 418
L++ + I+P T+NL+NP + ++LV + ++++ +S SFGFGG N +L+F K
Sbjct: 361 TILSLYEQIIPPTINLENPDAECDLNLVQGKTAHPLQSIDAVLSTSFGFGGVNTALLFTK 420
Query: 419 F 419
+
Sbjct: 421 Y 421
>gnl|CDD|181424 PRK08439, PRK08439, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 406
Score = 420 bits (1082), Expect = e-118
Identities = 202/420 (48%), Positives = 272/420 (64%), Gaps = 15/420 (3%)
Query: 1 MRRVVVTGLGMITPLGCGVDVSWSRLIAGEVGIRHLDQKFDLEGLSSKIAGLIPVGNGSD 60
M+RVVVTG+GMI LG + S+ + GE GI+ + FD +IAG I
Sbjct: 1 MKRVVVTGIGMINSLGLNKESSFKAICNGECGIKKI-TLFDASDFPVQIAGEIT------ 53
Query: 61 GTFNYEDWILSSDLRKIDQFILYGMVASDMALADSGWAPKTDKDRNSTGVVFGSGMGGLN 120
F+ + + +++K D+FI G+ A+ A+ D+G+ P + D GV SG+GGL
Sbjct: 54 -DFDPTEVMDPKEVKKADRFIQLGLKAAREAMKDAGFLP-EELDAERFGVSSASGIGGLP 111
Query: 121 RIVESSNVLRDGGPRKISPFTVPGSIISLLSGNISIRNQLRGPNHAVTTACSSGAHAIGD 180
I ++S + + GPRKISPF +P +++++L G ISI + L+GPN + TAC++G HAI +
Sbjct: 112 NIEKNSIICFEKGPRKISPFFIPSALVNMLGGFISIEHGLKGPNLSSVTACAAGTHAIIE 171
Query: 181 ASRLIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRFNDDPTRASRPFDQDRDGFVM 240
A + I G AD M+ GAE+ IC +G+ FAA +ALSTR NDDP +ASRPFD+DRDGFVM
Sbjct: 172 AVKTIMLGGADKMLVVGAESAICPVGIGGFAAMKALSTR-NDDPKKASRPFDKDRDGFVM 230
Query: 241 GEGAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITMPPEDGNGAYRCMSSAIARAK 300
GEGAGALVLE+ E AK RGAKIY+EIIG+G SGDA HIT P + G R M +A+ A
Sbjct: 231 GEGAGALVLEEYESAKKRGAKIYAEIIGFGESGDANHITSPAPE--GPLRAMKAALEMAG 288
Query: 301 LLPSDIDYINAHGTST-IADTIELGAVERLMGDSCYHVSMSSTKSAMGHLLGAAGAVEAA 359
IDYINAHGTST D E A++ L G +SSTK +GH LGAAGA+EA
Sbjct: 289 NPK--IDYINAHGTSTPYNDKNETAALKELFGSKEKVPPVSSTKGQIGHCLGAAGAIEAV 346
Query: 360 ICNLAIRDGIVPATLNLDNPAKKTFIDLVPHRAIKKNVNVAMSNSFGFGGTNVSLVFRKF 419
I +A+RDGI+P T+N + P + +D +P+ A K +NV MSNSFGFGGTN ++F+K
Sbjct: 347 ISIMAMRDGILPPTINQETPDPECDLDYIPNVARKAELNVVMSNSFGFGGTNGVVIFKKV 406
>gnl|CDD|181539 PRK08722, PRK08722, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 414
Score = 403 bits (1037), Expect = e-113
Identities = 217/421 (51%), Positives = 298/421 (70%), Gaps = 13/421 (3%)
Query: 2 RRVVVTGLGMITPLGCGVDVSWSRLIAGEVGIRHLDQKFDLEGLSSKIAGLIPVGNGSDG 61
RRVVVTG+GM++P+G V+ SW L+AG+ GI +++ FD S++ AGL+
Sbjct: 4 RRVVVTGMGMLSPVGNTVESSWKALLAGQSGIVNIEH-FDTTNFSTRFAGLVK------- 55
Query: 62 TFNYEDWILSSDLRKIDQFILYGMVASDMALADSGWAPKTDKDRNSTGVVFGSGMGGLNR 121
FN E+++ D RK+D FI YG+ A AL DSG T+++ + GV GSG+GGL
Sbjct: 56 DFNCEEYMSKKDARKMDLFIQYGIAAGIQALDDSGLE-VTEENAHRIGVAIGSGIGGLGL 114
Query: 122 IVESSNVLRDGGPRKISPFTVPGSIISLLSGNISIRNQLRGPNHAVTTACSSGAHAIGDA 181
I L + GPRK+SPF VP +I+++++GN+SI LRGPN A++TAC++G H IG A
Sbjct: 115 IEAGHQALVEKGPRKVSPFFVPSTIVNMIAGNLSIMRGLRGPNIAISTACTTGLHNIGHA 174
Query: 182 SRLIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRFNDDPTRASRPFDQDRDGFVMG 241
+R+IA+GDAD MVAGGAE LG+A F A +ALSTR ND+P +ASRP+D+DRDGFV+G
Sbjct: 175 ARMIAYGDADAMVAGGAEKASTPLGMAGFGAAKALSTR-NDEPQKASRPWDKDRDGFVLG 233
Query: 242 EGAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITMPPEDGNGAYRCMSSAIARAKL 301
+GAG +VLE+ EHAKARGAKIY+E++G+G+SGDA+H+T P EDG+G M +A+ A +
Sbjct: 234 DGAGMMVLEEYEHAKARGAKIYAELVGFGMSGDAYHMTSPSEDGSGGALAMEAAMRDAGV 293
Query: 302 LPSDIDYINAHGTSTIA-DTIELGAVERLMGDS-CYHVSMSSTKSAMGHLLGAAGAVEAA 359
I Y+NAHGTST A D E+ ++R +G++ V +SSTKS GHLLGAAG+VEA
Sbjct: 294 TGEQIGYVNAHGTSTPAGDVAEIKGIKRALGEAGSKQVLVSSTKSMTGHLLGAAGSVEAI 353
Query: 360 ICNLAIRDGIVPATLNLDNPAKKTFIDLVPHRAIK-KNVNVAMSNSFGFGGTNVSLVFRK 418
I +++ D IVP T+NLD+P + IDLVPH A K +++ A+ NSFGFGGTN SL+F+K
Sbjct: 354 ITVMSLVDQIVPPTINLDDPEEGLDIDLVPHTARKVESMEYAICNSFGFGGTNGSLIFKK 413
Query: 419 F 419
Sbjct: 414 M 414
>gnl|CDD|178384 PLN02787, PLN02787, 3-oxoacyl-[acyl-carrier-protein] synthase II.
Length = 540
Score = 333 bits (855), Expect = 5e-92
Identities = 181/423 (42%), Positives = 266/423 (62%), Gaps = 15/423 (3%)
Query: 2 RRVVVTGLGMITPLGCGVDVSWSRLIAGEVGIRHLDQKFDLEGLSSKIAGLIPVGNGSDG 61
RRVVVTG+G+++PLG DV ++ L+ G GI ++ +FD ++IAG I
Sbjct: 129 RRVVVTGMGVVSPLGHDPDVFYNNLLEGVSGISEIE-RFDCSQFPTRIAGEIK------- 180
Query: 62 TFNYEDWILSSDLRKIDQFILYGMVASDMALADSGWAPKTDKDRNST--GVVFGSGMGGL 119
+F+ + W+ +++D+F+LY + A ALAD G K+ + T GV+ GS MGG+
Sbjct: 181 SFSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMKELDKTKCGVLIGSAMGGM 240
Query: 120 NRIVESSNVLRDGGPRKISPFTVPGSIISLLSGNISIRNQLRGPNHAVTTACSSGAHAIG 179
++ LR RK++PF VP + ++ S +++ GPN++++TAC++ I
Sbjct: 241 KVFNDAIEALRIS-YRKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCIL 299
Query: 180 DASRLIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRFNDDPTRASRPFDQDRDGFV 239
+A+ I G+ADVM+ GG++A I +G+ F ACRALS R NDDPT+ASRP+D +RDGFV
Sbjct: 300 NAANHIIRGEADVMLCGGSDAAIIPIGLGGFVACRALSQR-NDDPTKASRPWDMNRDGFV 358
Query: 240 MGEGAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITMPPEDGNGAYRCMSSAIARA 299
MGEGAG L+LE+LEHAK RGA IY+E +G + DA+H+T P +G G C+ A+A++
Sbjct: 359 MGEGAGVLLLEELEHAKKRGANIYAEFLGGSFTCDAYHMTEPHPEGAGVILCIEKALAQS 418
Query: 300 KLLPSDIDYINAHGTSTIA-DTIELGAVERLMGDSCYHVSMSSTKSAMGHLLGAAGAVEA 358
+ D++YINAH TST A D E A+ R G + + ++STKS +GHLLGAAGAVEA
Sbjct: 419 GVSKEDVNYINAHATSTKAGDLKEYQALMRCFGQNP-ELRVNSTKSMIGHLLGAAGAVEA 477
Query: 359 AICNLAIRDGIVPATLNLDNPAKKTFID-LVPHRAIKKNVNVAMSNSFGFGGTNVSLVFR 417
AIR G V +NL+NP LV + + ++ VA+SNSFGFGG N S++F
Sbjct: 478 IATVQAIRTGWVHPNINLENPESGVDTKVLVGPKKERLDIKVALSNSFGFGGHNSSILFA 537
Query: 418 KFQ 420
++
Sbjct: 538 PYK 540
>gnl|CDD|181166 PRK07910, PRK07910, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 418
Score = 300 bits (770), Expect = 4e-82
Identities = 151/417 (36%), Positives = 226/417 (54%), Gaps = 13/417 (3%)
Query: 4 VVVTGLGMITPLGCGVDVSWSRLIAGEVGIRHLDQKFDLEGLSSKIAGLIPVGNGSDGTF 63
VVVTG+ M T L + +W L+ G+ GIR LD F +E PV G
Sbjct: 14 VVVTGIAMTTALATDAETTWKLLLDGQSGIRTLDDPF-VEEFDL------PVRIGGHLLE 66
Query: 64 NYEDWILSSDLRKIDQFILYGMVASDMALADSGWAPKTDKDRNSTGVVFGSGMGGLNRIV 123
++ + +LR++ V ++G +P+ D +R V G+G+G +V
Sbjct: 67 EFDHQLTRVELRRMSYLQRMSTVLGRRVWENAG-SPEVDTNR--LMVSIGTGLGSAEELV 123
Query: 124 ESSNVLRDGGPRKISPFTVPGSIISLLSGNISIRNQLRGPNHAVTTACSSGAHAIGDASR 183
+ + +R G R +SP V + + + + + + +AC+SG+ AI A R
Sbjct: 124 FAYDDMRARGLRAVSPLAVQMYMPNGPAAAVGLERHAKAGVITPVSACASGSEAIAQAWR 183
Query: 184 LIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRFNDDPTRASRPFDQDRDGFVMGEG 243
I G+AD+ + GG E I + +A FA R + + NDDP A RPFD+DRDGFV GEG
Sbjct: 184 QIVLGEADIAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGACRPFDKDRDGFVFGEG 243
Query: 244 AGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITMPPEDGNGAYRCMSSAIARAKLLP 303
+V+E EHAKARGA I + I+G ++ D FH+ P +G A M+ AI A L P
Sbjct: 244 GALMVIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGERAGHAMTRAIELAGLTP 303
Query: 304 SDIDYINAHGTST-IADTIELGAVERLMGDSCYHVSMSSTKSAMGHLLGAAGAVEAAICN 362
DID++NAH T T + D E A+ +G + ++ + KSA+GH +GA GAVE+ +
Sbjct: 304 GDIDHVNAHATGTSVGDVAEGKAINNALGG--HRPAVYAPKSALGHSVGAVGAVESILTV 361
Query: 363 LAIRDGIVPATLNLDNPAKKTFIDLVPHRAIKKNVNVAMSNSFGFGGTNVSLVFRKF 419
LA+RDG++P TLNL+N + +D+V N A++NSFGFGG NV+L F ++
Sbjct: 362 LALRDGVIPPTLNLENLDPEIDLDVVAGEPRPGNYRYAINNSFGFGGHNVALAFGRY 418
>gnl|CDD|181184 PRK07967, PRK07967, 3-oxoacyl-(acyl carrier protein) synthase I;
Reviewed.
Length = 406
Score = 300 bits (769), Expect = 6e-82
Identities = 154/424 (36%), Positives = 234/424 (55%), Gaps = 23/424 (5%)
Query: 1 MRRVVVTGLGMITPLGCGVDVSWSRLIAGEVGIRHLDQKFDLEGLSSKIAGLIPVGNGSD 60
MRRVV+TGLG+++ +G + L G GI +F G+ S++ G +
Sbjct: 1 MRRVVITGLGIVSSIGNNQQEVLASLREGRSGITF-SPEFAEMGMRSQVWGNV------- 52
Query: 61 GTFNYEDWILSSDLRKIDQFILYGMVASDMALADSGWAPKTDKDRNSTGVVFGSGMGGLN 120
+ I +R + Y +A + A+AD+G + TG++ GSG G
Sbjct: 53 -KLDPTGLIDRKVMRFMGDASAYAYLAMEQAIADAGLSE-EQVSNPRTGLIAGSGGGSTR 110
Query: 121 RIVESSNVLRD-GGPRKISPFTVPGSIISLLSGNISIRNQLRGPNHAVTTACSSGAHAIG 179
VE+++ +R GP+++ P+ V ++ S +S ++ +++G N+++++AC++ AH IG
Sbjct: 111 NQVEAADAMRGPRGPKRVGPYAVTKAMASTVSACLATPFKIKGVNYSISSACATSAHCIG 170
Query: 180 DASRLIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRFNDDPTRASRPFDQDRDGFV 239
+A I G D++ AGG E + F A ALST++ND P +ASR +D +RDGFV
Sbjct: 171 NAVEQIQLGKQDIVFAGGGEE-LDWEMSCLFDAMGALSTKYNDTPEKASRAYDANRDGFV 229
Query: 240 MGEGAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITMPPEDGNGAYRCMSSAIARA 299
+ G G +V+E+LEHA ARGAKIY+EI+GYG + D + + P G GA RCM A+A
Sbjct: 230 IAGGGGVVVVEELEHALARGAKIYAEIVGYGATSDGYDMVAP--SGEGAVRCMQMALATV 287
Query: 300 KLLPSDIDYINAHGTST-IADTIELGAVERLMGDSCYHVSMSSTKSAMGHLLGAAGAVEA 358
+ IDYIN HGTST + D ELGA+ + GD + S+TKS GH LGAAG EA
Sbjct: 288 D---TPIDYINTHGTSTPVGDVKELGAIREVFGDKSPAI--SATKSLTGHSLGAAGVQEA 342
Query: 359 AICNLAIRDGIVPATLNLDNPAKKTFIDLVPHRAIKKNV--NVAMSNSFGFGGTNVSLVF 416
L + G + + N++ + + N MSNSFGFGGTN +LVF
Sbjct: 343 IYSLLMMEHGFIAPSANIEELDPQ-AAGMPIVTETTDNAELTTVMSNSFGFGGTNATLVF 401
Query: 417 RKFQ 420
R+++
Sbjct: 402 RRYK 405
>gnl|CDD|173154 PRK14691, PRK14691, 3-oxoacyl-(acyl carrier protein) synthase II;
Provisional.
Length = 342
Score = 289 bits (741), Expect = 8e-79
Identities = 156/326 (47%), Positives = 220/326 (67%), Gaps = 4/326 (1%)
Query: 98 APKTDKDRNSTGVVFGSGMGGLNRIVESSNVLRDGGPRKISPFTVPGSIISLLSGNISIR 157
A T+K + T + G+G+GG I + GP+++SPFTVP +++L +G++SI+
Sbjct: 19 ADNTEK-QERTATIIGAGIGGFPAIAHAVRTSDSRGPKRLSPFTVPSFLVNLAAGHVSIK 77
Query: 158 NQLRGPNHAVTTACSSGAHAIGDASRLIAFGDADVMVAGGAEAPICRLGVASFAACRALS 217
+ +GP A TAC++G AIGDA R+I +ADV + GGAEA I + +A FAA RALS
Sbjct: 78 HHFKGPIGAPVTACAAGVQAIGDAVRMIRNNEADVALCGGAEAVIDTVSLAGFAAARALS 137
Query: 218 TRFNDDPTRASRPFDQDRDGFVMGEGAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFH 277
T FN P +ASRPFD RDGFVMGEGAG L++E+LEHA ARGAK +EI+GYG S DA+H
Sbjct: 138 THFNSTPEKASRPFDTARDGFVMGEGAGLLIIEELEHALARGAKPLAEIVGYGTSADAYH 197
Query: 278 ITMPPEDGNGAYRCMSSAIARAKLLPSDIDYINAHGTST-IADTIELGAVERLMGDSCYH 336
+T EDG+GAYR M A+ +A + P + ++NAH TST + D E+ A++ L G+S
Sbjct: 198 MTSGAEDGDGAYRAMKIALRQAGITPEQVQHLNAHATSTPVGDLGEINAIKHLFGES-NA 256
Query: 337 VSMSSTKSAMGHLLGAAGAVEAAICNLAIRDGIVPATLNLDNP-AKKTFIDLVPHRAIKK 395
++++STKSA GHLLGAAG +E LA+RD IVPATLNL+NP ++++ A
Sbjct: 257 LAITSTKSATGHLLGAAGGLETIFTVLALRDQIVPATLNLENPDPAAKGLNIIAGNAQPH 316
Query: 396 NVNVAMSNSFGFGGTNVSLVFRKFQD 421
++ A+SN FGF G N S++ +++ D
Sbjct: 317 DMTYALSNGFGFAGVNASILLKRWVD 342
>gnl|CDD|181657 PRK09116, PRK09116, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 405
Score = 278 bits (714), Expect = 2e-75
Identities = 154/424 (36%), Positives = 217/424 (51%), Gaps = 26/424 (6%)
Query: 1 MRRVVVTGLGMITPLGCGVDVSWSRLIAGEVGIRHLDQKFDLEGLSSKIAGLIPVGNGSD 60
MRRVVVTG+G +T LG +RL AG +R + + +GL++++A I
Sbjct: 1 MRRVVVTGMGGVTALGEDWQTIAARLKAGRNAVRRMPEWDRYDGLNTRLAAPID------ 54
Query: 61 GTFNYEDWILSSD-----LRKIDQFILYGMVASDMALADSGWAPKTDKDRNSTGVVFGSG 115
D+ L + +R + + L AS++AL D+G G+ +GS
Sbjct: 55 ------DFELPAHYTRKKIRSMGRVSLMATRASELALEDAGLLGDPILTDGRMGIAYGSS 108
Query: 116 MGGLNRIVESSNVLRDGGPRKISPFTVPGSIISLLSGNISIRNQLRGPNHAVTTACSSGA 175
G + I +L +G I+ T + + N+ + L+G ++AC+SG+
Sbjct: 109 TGSTDPIGAFGTMLLEGSMSGITATTYVRMMPHTTAVNVGLFFGLKGRVIPTSSACTSGS 168
Query: 176 HAIGDASRLIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRFNDDPTRASRPFDQDR 235
IG A I +G VM+AGGAE +C A F A STR ND P RPFD +R
Sbjct: 169 QGIGYAYEAIKYGYQTVMLAGGAEE-LCPTEAAVFDTLFATSTR-NDAPELTPRPFDANR 226
Query: 236 DGFVMGEGAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITMPPEDGNGAYRCMSSA 295
DG V+GEGAG LVLE+LEHAKARGA IY+EI+G+G + D H+T P + M A
Sbjct: 227 DGLVIGEGAGTLVLEELEHAKARGATIYAEIVGFGTNSDGAHVTQPQAETMQ--IAMELA 284
Query: 296 IARAKLLPSDIDYINAHGTST-IADTIELGAVERLMGDSCYHVSMSSTKSAMGHLLGAAG 354
+ A L P DI Y+NAHGT+T D E A + G + +SS KS GH LGA G
Sbjct: 285 LKDAGLAPEDIGYVNAHGTATDRGDIAESQATAAVFGAR---MPISSLKSYFGHTLGACG 341
Query: 355 AVEAAICNLAIRDGIVPATLNLDNPAKKTF-IDLVPHRAIKKNVNVAMSNSFGFGGTNVS 413
A+EA + + +G TLNL +D + A + + MSN+F FGG N S
Sbjct: 342 ALEAWMSIEMMNEGWFAPTLNLTQVDPACGALDYIMGEAREIDTEYVMSNNFAFGGINTS 401
Query: 414 LVFR 417
L+F+
Sbjct: 402 LIFK 405
>gnl|CDD|180594 PRK06501, PRK06501, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 425
Score = 265 bits (680), Expect = 1e-71
Identities = 157/437 (35%), Positives = 213/437 (48%), Gaps = 53/437 (12%)
Query: 4 VVVTGLGMITPLGCGVDVSWSRLIAGEVGIRHLDQKFDLEGLSSKIAGLIPVGNGSDGTF 63
V VTG+G++T LG G +W+ L AGE GI + +F EGL ++IAG +
Sbjct: 13 VAVTGMGVVTSLGQGKADNWAALTAGESGIHTI-TRFPTEGLRTRIAGTV---------- 61
Query: 64 NYEDWILSSDLRKIDQFILYGMVASDMALADSG--------------------WAPKTDK 103
D++ S +A++ ALA +G W +
Sbjct: 62 ---DFLPESPFGASALSEALARLAAEEALAQAGIGKGDFPGPLFLAAPPVELEWPARFAL 118
Query: 104 DRNSTGVVFGSGMGGLNRIVESSNVLRDGGPRKISPF---TVPGSIISLLSGNISIRNQL 160
G N +LR + GSI + ++ R
Sbjct: 119 AAAV----------GDNDAPSYDRLLRAARGGRFDALHERFQFGSI----ADRLADRFGT 164
Query: 161 RGPNHAVTTACSSGAHAIGDASRLIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRF 220
RG +++TAC+SGA AI I G+ D + + + + F+ ALST+
Sbjct: 165 RGLPISLSTACASGATAIQLGVEAIRRGETDRALCIATDGSVSAEALIRFSLLSALSTQ- 223
Query: 221 NDDPTRASRPFDQDRDGFVMGEGAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITM 280
ND P +AS+PF +DRDGFVM EGAGALVLE LE A ARGAKI + G G D+FH T
Sbjct: 224 NDPPEKASKPFSKDRDGFVMAEGAGALVLESLESAVARGAKILGIVAGCGEKADSFHRTR 283
Query: 281 PPEDGNGAYRCMSSAIARAKLLPSDIDYINAHGTSTIA-DTIELGAVERLMGDSCYHVSM 339
DG+ A + +A+A A L P IDYINAHGTST D +E + + G+ + +
Sbjct: 284 SSPDGSPAIGAIRAALADAGLTPEQIDYINAHGTSTPENDKMEYLGLSAVFGERLASIPV 343
Query: 340 SSTKSAMGHLLGAAGAVEAAICNLAIRDGIVPATLNLDNPAKKTFIDLVPHRAIKKNVNV 399
SS KS +GH L AAGAVEA L I+ G +P T+N DNP +D+VP+ A V
Sbjct: 344 SSNKSMIGHTLTAAGAVEAVFSLLTIQTGRLPPTINYDNPDPAIPLDVVPNVARDARVTA 403
Query: 400 AMSNSFGFGGTNVSLVF 416
+SNSFGFGG N SLV
Sbjct: 404 VLSNSFGFGGQNASLVL 420
>gnl|CDD|181683 PRK09185, PRK09185, 3-oxoacyl-(acyl carrier protein) synthase I;
Reviewed.
Length = 392
Score = 219 bits (561), Expect = 9e-58
Identities = 104/259 (40%), Positives = 135/259 (52%), Gaps = 19/259 (7%)
Query: 159 QLRGPNHAVTTACSSGAHAIGDASRLIAFGDADVMVAGGAEAPICRLGVASFAACRALST 218
L GP + ++TACSS A A RL+ G D + GG ++ +CRL + F + +LS
Sbjct: 148 GLSGPAYTISTACSSSAKVFASARRLLEAGLCDAAIVGGVDS-LCRLTLNGFNSLESLS- 205
Query: 219 RFNDDPTRASRPFDQDRDGFVMGEGAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHI 278
P R PF +RDG +GE A +LE + A ++G G S DA H+
Sbjct: 206 ---PQPCR---PFSANRDGINIGEAAAFFLLEREDDAAVA-------LLGVGESSDAHHM 252
Query: 279 TMPPEDGNGAYRCMSSAIARAKLLPSDIDYINAHGTSTIA-DTIELGAVERLMGDSCYHV 337
+ P +G GA M A+A A L P+DI YIN HGT+T D +E AV + GD V
Sbjct: 253 SAPHPEGLGAILAMQQALADAGLAPADIGYINLHGTATPLNDAMESRAVAAVFGD---GV 309
Query: 338 SMSSTKSAMGHLLGAAGAVEAAICNLAIRDGIVPATLNLDNPAKKTFIDLVPHRAIKKNV 397
SSTK GH LGAAGAVEAAIC LA+R G+ P N P + A +
Sbjct: 310 PCSSTKGLTGHTLGAAGAVEAAICWLALRHGLPPHGWNTGQPDPALPPLYLVENAQALAI 369
Query: 398 NVAMSNSFGFGGTNVSLVF 416
+SNSF FGG N SL+F
Sbjct: 370 RYVLSNSFAFGGNNCSLIF 388
Score = 31.7 bits (73), Expect = 0.36
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 1 MRRVVVTGLGMITPLGCGVDVSWSRLIAG 29
M V ++ G + LG G+D + L AG
Sbjct: 1 MTPVYISAFGATSALGRGLDAILAALRAG 29
>gnl|CDD|180324 PRK05952, PRK05952, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 381
Score = 215 bits (550), Expect = 1e-56
Identities = 147/430 (34%), Positives = 207/430 (48%), Gaps = 61/430 (14%)
Query: 1 MRRVVVTGLGMITPLGCGVDVSWSRLIAGEVGIRHLDQKFDLEGLSSKIAGLIPVGNGSD 60
M +VVVTG+G+++ LG ++ SW RL+ G+ GI+ L Q F L P+ G
Sbjct: 1 MMKVVVTGIGLVSALG-DLEQSWQRLLQGKSGIK-LHQPF---------PELPPLPLGLI 49
Query: 61 GTFNYEDWILSSDLRKIDQFILYGMVASDMALADSGW-APKTDKDRNSTGVVFGSGMG-- 117
G S L + + AL D+G P TD GVV GS G
Sbjct: 50 GNQ-------PSSLEDLTK------TVVTAALKDAGLTPPLTD-----CGVVIGSSRGCQ 91
Query: 118 GLNRIVESSNVLRDGGPRKISPF-----TVPGSIISLLSGNISIRNQLRGPNHAVTTACS 172
G + D P + T+P + I + GP A AC+
Sbjct: 92 GQWEKLARQMYQGDDSPDEELDLENWLDTLPHQAAIAAARQIGTQ----GPVLAPMAACA 147
Query: 173 SGAHAIGDASRLIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRFNDDPTRASRPFD 232
+G AI LI G ++AG EAPI L +A F AL+ T A PFD
Sbjct: 148 TGLWAIAQGVELIQTGQCQRVIAGAVEAPITPLTLAGFQQMGALA------KTGAY-PFD 200
Query: 233 QDRDGFVMGEGAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITMPPEDGNGAYRCM 292
+ R+G V+GEG LVLE E A+ RGAKIY +I+G+GL+ DA+H++ P DG A +
Sbjct: 201 RQREGLVLGEGGAILVLESAELAQKRGAKIYGQILGFGLTCDAYHMSAPEPDGKSAIAAI 260
Query: 293 SSAIARAKLLPSDIDYINAHGTST-IADTIELGAVERLMGDSCYHVSMSSTKSAMGHLLG 351
+AR+ L P DIDYI+AHGT+T + D E ++ L + V++SSTK A GH LG
Sbjct: 261 QQCLARSGLTPEDIDYIHAHGTATRLNDQREANLIQALFP---HRVAVSSTKGATGHTLG 317
Query: 352 AAGAVEAAICNLAIRDGIVPATLNLDNPAKKTF-IDLV--PHRAIKKNVNVAMSNSFGFG 408
A+GA+ A LA+R +P + L P F ++ V ++ + + SFGFG
Sbjct: 318 ASGALGVAFSLLALRHQQLPPCVGLQEPE---FDLNFVRQAQQS---PLQNVLCLSFGFG 371
Query: 409 GTNVSLVFRK 418
G N ++ K
Sbjct: 372 GQNAAIALGK 381
>gnl|CDD|180839 PRK07103, PRK07103, polyketide beta-ketoacyl:acyl carrier protein
synthase; Validated.
Length = 410
Score = 202 bits (517), Expect = 9e-53
Identities = 138/430 (32%), Positives = 200/430 (46%), Gaps = 32/430 (7%)
Query: 1 MRRVVVTGLGMITPLGCGVDVSWSRLIAGEVGIRHL------DQKFDLEGLSSKIAGLIP 54
M VVVTG+G+++ +G G + L+AG + GL+S G
Sbjct: 1 MDEVVVTGVGVVSAIGQGRPSFAAALLAGRHAFGVMRRPGRQVPDDAGAGLASAFIG--- 57
Query: 55 VGNGSDGTFNYEDWILSSDLRKIDQFILYGMVASDMALADSGWAPKTDKDRNSTGVVFGS 114
+ + + + LR+ + A+ A D+ P D + G+V
Sbjct: 58 ---AELDSLALPERLDAKLLRRASLSAQAALAAAREAWRDAALGPV---DPDRIGLV--- 108
Query: 115 GMGGLNRIVESSNVLRDGGPRKISPFTVPGSIISL----LSGNISIRNQLRGPNHAVTTA 170
+GG N + + L R F P +S L G S + +RG V A
Sbjct: 109 -VGGSN-LQQREQALVHETYRDRPAFLRPSYGLSFMDTDLVGLCSEQFGIRGEGFTVGGA 166
Query: 171 CSSGAHAIGDASRLIAFGDADVMVAGGAEAPICRLGVASFAACRALST-RFNDDPTRASR 229
+SG A+ A+RL+ G D +A GA + + + A+ + RF D+P A R
Sbjct: 167 SASGQLAVIQAARLVQSGSVDACIAVGALMDLSYWECQALRSLGAMGSDRFADEPEAACR 226
Query: 230 PFDQDRDGFVMGEGAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITMPPEDGNGAY 289
PFDQDRDGF+ GE GA+VLE E A+ RGA+ Y++++G+ + DA P G
Sbjct: 227 PFDQDRDGFIYGEACGAVVLESAESARRRGARPYAKLLGWSMRLDANRGPDP--SLEGEM 284
Query: 290 RCMSSAIARAKLLPSDIDYINAHGT-STIADTIELGAVERLMGDSCYHVSMSSTKSAMGH 348
R + +A+ RA L P DIDY+N HGT S + D EL A L H +++TKS GH
Sbjct: 285 RVIRAALRRAGLGPEDIDYVNPHGTGSPLGDETELAA---LFASGLAHAWINATKSLTGH 341
Query: 349 LLGAAGAVEAAICNLAIRDGIVPATLNLDNPAKKTFIDLVPHRAIKKNVNVAMSNSFGFG 408
L AAG VE L +R G + + NLD P + F V A + A+S SFGFG
Sbjct: 342 GLSAAGIVELIATLLQMRAGFLHPSRNLDEPIDERF-RWVGSTAESARIRYALSLSFGFG 400
Query: 409 GTNVSLVFRK 418
G N +LV +
Sbjct: 401 GINTALVLER 410
>gnl|CDD|129058 smart00825, PKS_KS, Beta-ketoacyl synthase. The structure of
beta-ketoacyl synthase is similar to that of the
thiolase family and also chalcone synthase. The active
site of beta-ketoacyl synthase is located between the N
and C-terminal domains.
Length = 424
Score = 160 bits (409), Expect = 4e-40
Identities = 112/346 (32%), Positives = 156/346 (45%), Gaps = 44/346 (12%)
Query: 91 ALADSGWAPKTDKDRNSTGVVFGSGMGGLNRIVESSNVLRDGGPRKISPFTVPGSIISLL 150
AL D+G P++ + TGV G+ + RD P I + G+ S +
Sbjct: 98 ALEDAGIDPESLRGSR-TGVFVGAMSSDYAE-----LLARD--PEDIEGYAATGTARSFI 149
Query: 151 SGNISIRNQLRGPNHAVTTACSSGAHAIGDASRLIAFGDADVMVAGGAEAPICRLGVASF 210
+ IS LRGP+ V TACSS A+ A + + G+ D+ +AGG + F
Sbjct: 150 ANRISYFFDLRGPSVTVDTACSSSLVALHLACQSLRSGECDMALAGGVNLILSPDTFVGF 209
Query: 211 AACRALSTRFNDDPTRASRPFDQDRDGFVMGEGAGALVLEDLEHAKARGAKIYSEIIGYG 270
+ LS P + FD D DG+V GEG G +VL+ L A G I + I G
Sbjct: 210 SRAGMLS------PDGRCKTFDADADGYVRGEGVGVVVLKRLSDALRDGDPILAVIRGSA 263
Query: 271 L--SGDAFHITMPPEDGNGAYRCMSSAIARAKLLPSDIDYINAHGTSTIA-DTIELGAV- 326
+ G + +T P G R + A+ARA + P+D+DY+ AHGT T D IE A+
Sbjct: 264 VNQDGRSNGLTAP--SGPAQARLIRQALARAGVDPADVDYVEAHGTGTPLGDPIEAEALA 321
Query: 327 -----ERLMGDSCYHVSMSSTKSAMGHLLGAAGAVEAAI--CNLAIRDGIVPATLNLDNP 379
R + S KS +GHL AAG A + LA+R G +P TL+ + P
Sbjct: 322 AVFGQGRPRDGPLL---LGSVKSNIGHLEAAAGV--AGLIKVVLALRHGTIPPTLHFETP 376
Query: 380 AKKTFIDL------VPHRAI----KKNVNVAMSNSFGFGGTNVSLV 415
IDL VP A A +SFGFGGTN ++
Sbjct: 377 NPH--IDLEESPLRVPTEATPWPATGRPRRAGVSSFGFGGTNAHVI 420
>gnl|CDD|163029 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid
synthase PfaA. Members of the seed for this alignment
are involved in omega-3 polyunsaturated fatty acid
biosynthesis, such as the protein PfaA from the
eicosapentaenoic acid biosynthesis operon in
Photobacterium profundum strain SS9. PfaA is encoded
together with PfaB, PfaC, and PfaD, and the functions of
the individual polypeptides have not yet been described.
More distant homologs of PfaA, also included with the
reach of this model, appear to be involved in
polyketide-like biosynthetic mechanisms of
polyunsaturated fatty acid biosynthesis, an alternative
to the more familiar iterated mechanism of chain
extension and desaturation, and in most cases are
encoded near genes for homologs of PfaB, PfaC, and/or
PfaD.
Length = 2582
Score = 119 bits (300), Expect = 1e-27
Identities = 109/378 (28%), Positives = 164/378 (43%), Gaps = 50/378 (13%)
Query: 82 LYGMVASDMALADSGWAPKTDKDRNSTGVVFGSGMGG--------------LNRIVESSN 127
L +V + L D+G D+D+ G+ G G G L ++ ++S
Sbjct: 95 LLSLVVAKEVLNDAGLPDGYDRDK--IGITLGVGGGQKQSSSLNARLQYPVLKKVFKASG 152
Query: 128 VLRDGGPRKISPF----------TVPGSIISLLSGNISIRNQLRGPNHAVTTACSSGAHA 177
V + I F + PGS+ +++SG I+ R L G N V AC+ A
Sbjct: 153 VEDEDSEMLIKKFQDQYIHWEENSFPGSLGNVISGRIANRFDLGGMNCVVDAACAGSLAA 212
Query: 178 IGDASRLIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRFNDDPTRASRPFDQDRDG 237
I A + G +++M+ GG SF+ A +T N+D +PFD D G
Sbjct: 213 IRMALSELLEGRSEMMITGGVCTDNSPFMYMSFSKTPAFTT--NED----IQPFDIDSKG 266
Query: 238 FVMGEGAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAF--HITMPPEDGNGAYRCMSSA 295
++GEG G + L+ LE A+ G +IY+ I G G S D I P +G + + A
Sbjct: 267 MMIGEGIGMMALKRLEDAERDGDRIYAVIKGVGASSDGKFKSIYAPRPEGQA--KALKRA 324
Query: 296 IARAKLLPSDIDYINAHGTSTIA-DTIELGAVERLMG---DSCYHVSMSSTKSAMGHLLG 351
A P I AHGT T A D E G + + D H+++ S KS +GH
Sbjct: 325 YDDAGFAPHTCGLIEAHGTGTAAGDVAEFGGLVSVFSQDNDQKQHIALGSVKSQIGHTKS 384
Query: 352 AAGAVEAAICNLAIRDGIVPATLNLDNPAKKTFIDLVPH------RAIKKNVN----VAM 401
AG LA+ ++P T+N+D P K I+ P R + + A
Sbjct: 385 TAGTAGMIKAVLALHHKVLPPTINVDQPNPKLDIENSPFYLNTETRPWMQREDGTPRRAG 444
Query: 402 SNSFGFGGTNVSLVFRKF 419
+SFGFGGTN +V ++
Sbjct: 445 ISSFGFGGTNFHMVLEEY 462
>gnl|CDD|180600 PRK06519, PRK06519, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 398
Score = 55.3 bits (134), Expect = 3e-08
Identities = 44/133 (33%), Positives = 57/133 (42%), Gaps = 33/133 (24%)
Query: 149 LLSGNISIRNQLRGPNHAVTTAC-------SSGAHAIGDASRLIAFGDADVMVAGGAEAP 201
LL+GNISI H VT + S+G AI A IA G +D + GGA
Sbjct: 153 LLAGNISIV-------HKVTGSSRTFMGEESAGVSAIEIAFARIASGQSDHALVGGA--- 202
Query: 202 ICRLGVASFAACRA---LSTRFNDDPTRAS-RPF----DQDRDGFVMGEGAGALVLEDLE 253
+ A R L + P +D GF++G G LVLE E
Sbjct: 203 --------YNAERPDMLLLYELGGLLLKGGWAPVWSRGGEDGGGFILGSGGAFLVLESRE 254
Query: 254 HAKARGAKIYSEI 266
HA+ARGA+ Y+ I
Sbjct: 255 HAEARGARPYARI 267
Score = 33.4 bits (77), Expect = 0.11
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 2 RRVVVTGLGMITPLGCGVDVSWSRLIAGEVGIR 34
VV+TG+G+++ LG G+D W+ L AG
Sbjct: 6 NDVVITGIGLVSSLGEGLDAHWNALSAGRPQPN 38
>gnl|CDD|162610 TIGR01930, AcCoA-C-Actrans, acetyl-CoA acetyltransferases. This
model represents a large family of enzymes which
catalyze the thiolysis of a linear fatty acid CoA (or
acetoacetyl-CoA) using a second CoA molecule to produce
acetyl-CoA and a CoA-ester product two carbons shorter
(or, alternatively, the condensation of two molecules of
acetyl-CoA to produce acetoacetyl-CoA and CoA). This
enzyme is also known as "thiolase", "3-ketoacyl-CoA
thiolase", "beta-ketothiolase" and "Fatty oxidation
complex beta subunit". When catalyzing the degradative
reaction on fatty acids the corresponding EC number is
2.3.1.16. The condensation reaction corresponds to
2.3.1.9. Note that the enzymes which catalyze the
condensation are generally not involved in fatty acid
biosynthesis, which is carried out by a decarboxylating
condensation of acetyl and malonyl esters of acyl
carrier proteins. Rather, this activity may produce
acetoacetyl-CoA for pathways such as IPP biosynthesis in
the absence of sufficient fatty acid oxidation.
Length = 386
Score = 46.5 bits (111), Expect = 2e-05
Identities = 26/89 (29%), Positives = 33/89 (37%), Gaps = 13/89 (14%)
Query: 163 PNHAVTTACSSGAHAIGDASRLIAFGDADVMVAGGAE----APICRLGVASFAACRALST 218
P + V C+SG A+ A++LI G+ADV+VAGG E P S R
Sbjct: 75 PAYTVNRQCASGLQAVILAAQLIRAGEADVVVAGGVESMSRVPY------SLPRSRREGV 128
Query: 219 RFNDDPTRASRPFDQDRDGF---VMGEGA 244
D D MG A
Sbjct: 129 DPGRFELEDQILKDGLTDPLNGLSMGLTA 157
Score = 31.8 bits (73), Expect = 0.37
Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 17/117 (14%)
Query: 243 GAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITMPPED-GNGAYRCMSSAIARAKL 301
GA AL+L E AK G + I+ + ++G + PE G G + A+ +A L
Sbjct: 248 GAAALLLMSEERAKELGLTPLARIVSFAVAG------VDPEIMGLGPVPAIPKALKKAGL 301
Query: 302 LPSDIDY--IN-AHGTSTIADTIELGAVERLMGDSCYHVSMSSTKSAMGHLLGAAGA 355
SDID IN A +A ELG + +V+ + A+GH LGA+GA
Sbjct: 302 SISDIDLFEINEAFAAQVLACIKELG-----LDLEKVNVNGGAI--ALGHPLGASGA 351
>gnl|CDD|180425 PRK06147, PRK06147, 3-oxoacyl-(acyl carrier protein) synthase;
Validated.
Length = 348
Score = 42.7 bits (101), Expect = 2e-04
Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 28/144 (19%)
Query: 173 SGAHAIGDASRLIAFGDADVMVAGGAEAPICRLGVASFAA-CRALSTRFNDDPTRASRPF 231
SGA A+ A RLIA G ++ G ++ + +A + A R L++
Sbjct: 135 SGAVALAQARRLIAAGGCPRVLVAGVDSLLTGPTLAHYEARDRLLTS------------- 181
Query: 232 DQDRDGFVMGEGAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITMP---PEDGNG- 287
Q+ +GF+ GE A A++L +A G ++G GL + + P G+G
Sbjct: 182 -QNSNGFIPGEAAAAVLLGRPAGGEAPGL----PLLGLGLGREPAPVGESEDLPLRGDGL 236
Query: 288 --AYRCMSSAIARAKLLPSDIDYI 309
A R +A+A A D+DY
Sbjct: 237 TQAIR---AALAEAGCGLEDMDYR 257
Score = 27.7 bits (62), Expect = 5.3
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 1 MRRVVVTGLGMITPLGC 17
MR + + G GM+T +G
Sbjct: 2 MRALAIVGSGMVTAVGL 18
>gnl|CDD|180261 PRK05790, PRK05790, putative acyltransferase; Provisional.
Length = 393
Score = 41.3 bits (98), Expect = 4e-04
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 171 CSSGAHAIGDASRLIAFGDADVMVAGGAE 199
C SG A+ A++ I GDAD++VAGG E
Sbjct: 88 CGSGLKAVALAAQAIRAGDADIVVAGGQE 116
Score = 32.4 bits (75), Expect = 0.25
Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 27/122 (22%)
Query: 243 GAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITMPPED-GNGAYRCMSSAIARAKL 301
GA A+V+ AK G + I+ Y ++G + P G G + A+ +A
Sbjct: 253 GAAAVVVMSEAKAKELGLTPLARIVSYAVAG------VDPAIMGIGPVPAIRKALEKAGW 306
Query: 302 LPSDIDYIN---AHGTSTIADTIELGAVERLMGDSCYHVSMSSTKS-----AMGHLLGAA 353
+D+D I A +A ELG + A+GH +GA+
Sbjct: 307 SLADLDLIEINEAFAAQALAVEKELG------------LDPEKVNVNGGAIALGHPIGAS 354
Query: 354 GA 355
GA
Sbjct: 355 GA 356
>gnl|CDD|178250 PLN02644, PLN02644, acetyl-CoA C-acetyltransferase.
Length = 394
Score = 41.2 bits (97), Expect = 5e-04
Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 24/148 (16%)
Query: 219 RFNDDPTRASRPFDQDRDGFV-------MGEGAGALVLEDLEHAKARGAKIYSEIIGYGL 271
+F+ R RP ++ G V + +GA ALVL E A G ++ ++I GY
Sbjct: 222 KFDPAKLRKLRPSFKEDGGSVTAGNASSISDGAAALVLVSGEKALELGLQVIAKIRGY-- 279
Query: 272 SGDAFHITMPPEDGNGA-YRCMSSAIARAKLLPSDIDY--IN-AHGTSTIADTIELGAVE 327
DA PE A + A+ A L S +DY IN A +A+ +
Sbjct: 280 -ADA---AQAPELFTTAPALAIPKALKHAGLEASQVDYYEINEAFSVVALAN-------Q 328
Query: 328 RLMGDSCYHVSMSSTKSAMGHLLGAAGA 355
+L+G V++ ++GH +G +GA
Sbjct: 329 KLLGLDPEKVNVHGGAVSLGHPIGCSGA 356
Score = 30.8 bits (70), Expect = 0.68
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 163 PNHAVTTA----CSSGAHAIGDASRLIAFGDADVMVAGGAEA 200
P + T C+SG A+ A++ I G DV+VAGG E+
Sbjct: 75 PPSTICTTVNKVCASGMKAVMLAAQSIQLGINDVVVAGGMES 116
>gnl|CDD|181624 PRK09050, PRK09050, beta-ketoadipyl CoA thiolase; Validated.
Length = 401
Score = 39.2 bits (92), Expect = 0.002
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 20/61 (32%)
Query: 139 PFTVPGSIISLLSGNISIRNQLRGPNHAVTTACSSGAHAIGDASRLIAFGDADVMVAGGA 198
P +VPG+ I N+L C SG A+G A+R I G+A++M+AGG
Sbjct: 78 PVSVPGTTI----------NRL----------CGSGMDAVGTAARAIKAGEAELMIAGGV 117
Query: 199 E 199
E
Sbjct: 118 E 118
>gnl|CDD|181626 PRK09052, PRK09052, acetyl-CoA acetyltransferase; Provisional.
Length = 399
Score = 39.2 bits (92), Expect = 0.002
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 171 CSSGAHAIGDASRLIAFGDADVMVAGGAE 199
C+SG A+ A+ I G+ADVM+A G E
Sbjct: 95 CASGLQAVAMAADRIRVGEADVMIAAGVE 123
Score = 28.4 bits (64), Expect = 3.1
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 25/128 (19%)
Query: 240 MGEGAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITMPPE-DGNGAYRCMSSAIAR 298
+GAGA++L + K + + + ++G +PPE G G + +A+ +
Sbjct: 256 TSDGAGAVILVSEKALKQFNLTPLARFVSFAVAG------VPPEIMGIGPIEAIPAALKQ 309
Query: 299 AKLLPSDIDYIN---AHGTSTIADTIELG----AVERLMGDSCYHVSMSSTKSAMGHLLG 351
A L D+D+I A ++A +LG V L G A+GH LG
Sbjct: 310 AGLKQDDLDWIELNEAFAAQSLAVIRDLGLDPSKVNPLGG-----------AIALGHPLG 358
Query: 352 AAGAVEAA 359
A GA+ A
Sbjct: 359 ATGAIRTA 366
>gnl|CDD|183998 PRK13359, PRK13359, beta-ketoadipyl CoA thiolase; Provisional.
Length = 400
Score = 38.6 bits (90), Expect = 0.003
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 163 PNHAVTTACSSGAHAIGDASRLIAFGDADVMVAGGAEA 200
P + C SG A+G A+R I G+A +M+AGG E+
Sbjct: 82 PGSTINRLCGSGMDAVGVAARAIKSGEAALMIAGGVES 119
Score = 31.3 bits (71), Expect = 0.49
Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 13/117 (11%)
Query: 242 EGAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITMPPEDGNGAYRCMSSAIARAKL 301
+GA AL+L A+ G K + ++G +G + G G +AR +
Sbjct: 257 DGACALLLASEAAARRHGLKPRARVLGIATAGVEPRVM-----GIGPAPATQKLLARLGM 311
Query: 302 LPSDIDYIN---AHGTSTIADTIELGAVERLMGDSCYHVSMSSTKSAMGHLLGAAGA 355
D I A + +A ELG + D V+ + A+GH LGA+GA
Sbjct: 312 TLDQFDVIELNEAFASQGLAVLRELG-----LADDDARVNPNGGAIALGHPLGASGA 363
>gnl|CDD|180710 PRK06816, PRK06816, 3-oxoacyl-(acyl carrier protein) synthase III;
Reviewed.
Length = 378
Score = 38.4 bits (90), Expect = 0.004
Identities = 33/133 (24%), Positives = 54/133 (40%), Gaps = 22/133 (16%)
Query: 147 ISLLSGNISIRNQLRGPNHAV----------------TTACSSGAHAIGDASRLIAFGDA 190
I LL+ S +QL P HA C++G A+ A + G++
Sbjct: 85 IELLACGTSQPDQLM-PGHASMVHGELGAPPIEVVSSAGVCAAGMMALKYAYLSVKAGES 143
Query: 191 DVMVAGGAEAPICRLGVAS-FAACRALSTRFNDDPTRASRPFDQDRDGFVMGEGAGALVL 249
VA +E R AS F A ++P A F++D +++ +GAGA++L
Sbjct: 144 RNAVATASELA-SRWFRASRFEAEEEKLAELEENPEIA---FEKDFLRWMLSDGAGAVLL 199
Query: 250 EDLEHAKARGAKI 262
E+ +I
Sbjct: 200 ENKPRPDGLSLRI 212
>gnl|CDD|181625 PRK09051, PRK09051, beta-ketothiolase; Provisional.
Length = 394
Score = 38.4 bits (90), Expect = 0.004
Identities = 18/37 (48%), Positives = 21/37 (56%)
Query: 163 PNHAVTTACSSGAHAIGDASRLIAFGDADVMVAGGAE 199
P V C SG AI A++ I GDADV + GGAE
Sbjct: 82 PAFNVNRLCGSGLQAIVSAAQAILLGDADVAIGGGAE 118
Score = 34.9 bits (81), Expect = 0.037
Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 11/116 (9%)
Query: 242 EGAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITMPPE-DGNGAYRCMSSAIARAK 300
+GA A+VL + + A+ARG K + ++GY +G + PE G G A+ RA
Sbjct: 253 DGAAAVVLAEADAAEARGLKPLARLVGYAHAG------VDPEYMGIGPVPATQKALERAG 306
Query: 301 LLPSDIDYINAHGTSTIADTIELGAVERLMGDSCYHVSMSSTKSAMGHLLGAAGAV 356
L +D+D I A+ A + AV R +G V+ + + ++GH +GA GA+
Sbjct: 307 LTVADLDVIEANE----AFAAQACAVTRELGLDPAKVNPNGSGISLGHPVGATGAI 358
>gnl|CDD|131483 TIGR02430, pcaF, beta-ketoadipyl CoA thiolase. Members of this
family are designated beta-ketoadipyl CoA thiolase, an
enzyme that acts at the end of pathways for the
degradation of protocatechuate (from benzoate and
related compounds) and of phenylacetic acid.
Length = 400
Score = 37.5 bits (87), Expect = 0.008
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 163 PNHAVTTACSSGAHAIGDASRLIAFGDADVMVAGGAEA 200
P V C SG AIG A+R I G+AD+++AGG E+
Sbjct: 81 PGTTVNRLCGSGLDAIGMAARAIKAGEADLLIAGGVES 118
Score = 35.5 bits (82), Expect = 0.027
Identities = 37/132 (28%), Positives = 51/132 (38%), Gaps = 15/132 (11%)
Query: 242 EGAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITMPPEDGNGAYRCMSSAIARAKL 301
+GA AL+L E + G + I+ +G P G G +ARA L
Sbjct: 257 DGAAALLLASEEAVQRHGLTPRARILAAATAGVE-----PRIMGIGPVPATQKLLARAGL 311
Query: 302 LPSDIDYIN---AHGTSTIADTIELGAVERLMGDSCYHVSMSSTKSAMGHLLGAAGA--V 356
D I A +A ELG + D V+ + A+GH LGA+GA V
Sbjct: 312 SIDQFDVIELNEAFAAQALAVLRELG-----LADDDARVNPNGGAIALGHPLGASGARLV 366
Query: 357 EAAICNLAIRDG 368
A+ L G
Sbjct: 367 LTALRQLERSGG 378
>gnl|CDD|180468 PRK06205, PRK06205, acetyl-CoA acetyltransferase; Provisional.
Length = 404
Score = 36.1 bits (84), Expect = 0.018
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 171 CSSGAHAIGDASRLIAFGDADVMVAGGAE 199
C SG A+ A+ + G ADV++AGGAE
Sbjct: 88 CGSGLQAVITAAMQVQTGAADVVIAGGAE 116
>gnl|CDD|181265 PRK08170, PRK08170, acetyl-CoA acetyltransferase; Provisional.
Length = 426
Score = 35.4 bits (82), Expect = 0.031
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 163 PNHAVTTACSSGAHAIGDASRLIAFGDADVMVAGGAEA 200
P V C+SG A+ A+ IA G AD+++AGG EA
Sbjct: 81 PAWTVQRNCASGMQALDSAAANIALGRADLVLAGGVEA 118
>gnl|CDD|181072 PRK07661, PRK07661, acetyl-CoA acetyltransferase; Provisional.
Length = 391
Score = 34.7 bits (80), Expect = 0.044
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 171 CSSGAHAIGDASRLIAFGDADVMVAGGAEA 200
CSSG +I + I G ++ ++AGGAE+
Sbjct: 90 CSSGLQSIAYGAERIMLGHSEAVIAGGAES 119
>gnl|CDD|180843 PRK07108, PRK07108, acetyl-CoA acetyltransferase; Provisional.
Length = 392
Score = 34.7 bits (80), Expect = 0.050
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 163 PNHAVTTACSSGAHAIGDASRLIAFGDADVMVAGGAEAPIC 203
P V CSSG I A++ + G+ DV VAGG E+ C
Sbjct: 82 PGMTVNRFCSSGLQTIALAAQRVIAGEGDVFVAGGVESISC 122
>gnl|CDD|181242 PRK08131, PRK08131, acetyl-CoA acetyltransferase; Provisional.
Length = 401
Score = 34.4 bits (79), Expect = 0.053
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 163 PNHAVTTACSSGAHAIGDASRLIAFGDADVMVAGGAEA 200
P V C+SG A+ DA+R I G+ D+ +AGG E+
Sbjct: 81 PGQTVNRLCASGLAAVIDAARAITCGEGDLYLAGGVES 118
>gnl|CDD|180563 PRK06445, PRK06445, acetyl-CoA acetyltransferase; Provisional.
Length = 394
Score = 34.3 bits (79), Expect = 0.056
Identities = 34/117 (29%), Positives = 48/117 (41%), Gaps = 17/117 (14%)
Query: 243 GAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITMPPE-DGNGAYRCMSSAIARAKL 301
GA ++L + K G K ++I +G +G +PP G G A+ +A L
Sbjct: 254 GASYVLLMSKKAVKKYGLKPMAKIRSFGFAG------VPPAIMGKGPVPASKKALEKAGL 307
Query: 302 LPSDIDY--IN-AHGTSTIADTIELGAVERLMGDSCYHVSMSSTKSAMGHLLGAAGA 355
DID IN A + ELG V++ A+GH LGA GA
Sbjct: 308 SVKDIDLWEINEAFAVVVLYAIKELGLDPET-------VNIKGGAIAIGHPLGATGA 357
Score = 33.2 bits (76), Expect = 0.14
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 163 PNHAVTTACSSGAHAIGDASRLIAFGDADVMVAGGAE 199
P AV C+S + + IA G AD+++AGG E
Sbjct: 87 PAMAVDRQCASSLTTVSIGAMEIATGMADIVIAGGVE 123
>gnl|CDD|102340 PRK06366, PRK06366, acetyl-CoA acetyltransferase; Provisional.
Length = 388
Score = 34.2 bits (78), Expect = 0.069
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 165 HAVTTACSSGAHAIGDASRLIAFGDADVMVAGGAE 199
+ V C+SG A+ A+R I G+ D+++AGG E
Sbjct: 82 YTVNVVCASGMLAVESAAREIMLGERDLVIAGGME 116
>gnl|CDD|180378 PRK06064, PRK06064, acetyl-CoA acetyltransferase; Provisional.
Length = 389
Score = 34.1 bits (79), Expect = 0.075
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 163 PNHAVTTACSSGAHAIGDASRLIAFGDADVMVAGGAE 199
P V AC+SG A+ A +A G+ADV++A G E
Sbjct: 77 PATRVEAACASGGAALRQAYLAVASGEADVVLAAGVE 113
Score = 29.5 bits (67), Expect = 1.8
Identities = 36/139 (25%), Positives = 51/139 (36%), Gaps = 28/139 (20%)
Query: 243 GAGALVLEDLEHAKA-RGAKIYSEIIGYGLSGDAFH-----ITMPPEDGNGAYRCMSSAI 296
GA A++L E AK ++ + G A H T+ + A A
Sbjct: 214 GAAAVILASEEKAKEYTDTPVWIKASGQASDTIALHDRKDFTTL-----DAAVVAAEKAY 268
Query: 297 ARAKLLPSDIDYINAHGTSTIADTI---ELGAVERLMG-----------DSCYHVSMSST 342
A + P DID H TIA+ + +LG ++ G V+ S
Sbjct: 269 KMAGIEPKDIDVAEVHDCFTIAEILAYEDLGFAKKGEGGKLAREGQTYIGGDIPVNPSGG 328
Query: 343 KSAMGHLLGAAG---AVEA 358
A GH +GA G AVE
Sbjct: 329 LKAKGHPVGATGVSQAVEI 347
Score = 27.9 bits (63), Expect = 4.8
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 1 MRRVVVTGLGMITPLGCGVDVSWSRLIAGEVGIRHLDQKFDLEGLSSKIAGLIPVGNGSD 60
MR V + G+G T G DVS R +A E G+ L+ G+ K + VGN S
Sbjct: 1 MRDVAIIGVGQ-TKFGELWDVSL-RDLAVEAGLEALEDA----GIDGKDIDAMYVGNMSA 54
Query: 61 GTFNYE 66
G F +
Sbjct: 55 GLFVSQ 60
>gnl|CDD|181311 PRK08235, PRK08235, acetyl-CoA acetyltransferase; Provisional.
Length = 393
Score = 33.5 bits (77), Expect = 0.10
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 163 PNHAVTTACSSGAHAIGDASRLIAFGDADVMVAGGAEA 200
V C+SG A+ A ++I GDA V+VAGG E+
Sbjct: 80 QTETVNKVCASGLRAVTLADQIIRAGDASVIVAGGMES 117
Score = 29.3 bits (66), Expect = 1.8
Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 17/118 (14%)
Query: 242 EGAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITMPPEDGNGA-YRCMSSAIARAK 300
+GA ALVL + AK G K + I+ + I + +D +++ + +
Sbjct: 252 DGAAALVLMSEDRAKQEGRKPLATILAHT------AIAVEAKDFPRTPGYAINALLEKTG 305
Query: 301 LLPSDIDY--IN-AHGTSTIADTIELGAVERLMGDSCYHVSMSSTKSAMGHLLGAAGA 355
DID IN A +A T + G V+++ A+GH +GA+GA
Sbjct: 306 KTVEDIDLFEINEAFAAVALAST-------EIAGIDPEKVNVNGGAVALGHPIGASGA 356
>gnl|CDD|181592 PRK08947, fadA, 3-ketoacyl-CoA thiolase; Reviewed.
Length = 387
Score = 32.2 bits (74), Expect = 0.27
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 171 CSSGAHAIGDASRLIAFGDADVMVAGGAE 199
C S A+ DA+R I GD DV + GG E
Sbjct: 91 CGSSMQALHDAARAIMTGDGDVFLIGGVE 119
>gnl|CDD|131498 TIGR02445, fadA, fatty oxidation complex, beta subunit FadA. This
subunit of the FadBA complex has acetyl-CoA
C-acyltransferase (EC 2.3.1.16) activity, and is also
known as beta-ketothiolase and fatty oxidation complex,
beta subunit. This protein is almost always located
adjacent to FadB (TIGR02437). The FadBA complex is the
major complex active for beta-oxidation of fatty acids
in E. coli.
Length = 385
Score = 31.8 bits (72), Expect = 0.31
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 163 PNHAVTTACSSGAHAIGDASRLIAFGDADVMVAGGAE 199
V C S A+ DA+R I GDADV + GG E
Sbjct: 81 AAVTVNRLCGSSMQALHDAARAIMTGDADVCLVGGVE 117
>gnl|CDD|168156 PRK05656, PRK05656, acetyl-CoA acetyltransferase; Provisional.
Length = 393
Score = 31.8 bits (72), Expect = 0.35
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 163 PNHAVTTACSSGAHAIGDASRLIAFGDADVMVAGGAE 199
P + C SG A+ A++ I GDA+V++AGG E
Sbjct: 80 PAMTLNKVCGSGLKALHLAAQAIRCGDAEVIIAGGQE 116
>gnl|CDD|180373 PRK06059, PRK06059, lipid-transfer protein; Provisional.
Length = 399
Score = 30.1 bits (68), Expect = 0.99
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 170 ACSSGAHAIGDASRLIAFGDADVMVAGGAEA 200
AC+SG+ A+ A I G DV + GA+
Sbjct: 84 ACASGSQALQSARAQILAGLCDVALVVGADT 114
>gnl|CDD|168632 PRK06633, PRK06633, acetyl-CoA acetyltransferase; Provisional.
Length = 392
Score = 30.0 bits (67), Expect = 1.1
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 163 PNHAVTTACSSGAHAIGDASRLIAFGDADVMVAGGAE 199
P + + C SG ++ A+ I GD ++++AGG E
Sbjct: 81 PGYTINKVCGSGLKSVALAANSIMTGDNEIVIAGGQE 117
>gnl|CDD|184699 PRK14478, PRK14478, nitrogenase molybdenum-cofactor biosynthesis
protein NifE; Provisional.
Length = 475
Score = 30.0 bits (68), Expect = 1.1
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 171 CSSGAHAIGDAS-----RLIAFGDADVMVAGGAEAPI 202
AH I DA+ +++ AD+M++GG I
Sbjct: 370 MGPDAHMIDDANPRELYKMLKEAKADIMLSGGRSQFI 406
>gnl|CDD|165238 PHA02927, PHA02927, secreted complement-binding protein;
Provisional.
Length = 263
Score = 29.2 bits (65), Expect = 1.9
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 166 AVTTACSSGAHAIGDASRLIAFGDADVMVAGGAEAPIC 203
++T +C+SG IG++ G MV EAPIC
Sbjct: 107 SITYSCNSGYQLIGESKSYCELGSTGSMV-WNPEAPIC 143
>gnl|CDD|162288 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase. This model
describes thioredoxin-disulfide reductase, a member of
the pyridine nucleotide-disulphide oxidoreductases
(PFAM:PF00070).
Length = 300
Score = 28.4 bits (64), Expect = 3.5
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 247 LVLEDLEHAKARGAKI-YSEIIGYGLSGDAFHITMPPEDGNGAYRCMSSAIA 297
L+ + E A GA+I Y E+I LS F + Y + IA
Sbjct: 59 LMEKMKEQAVKFGAEIIYEEVIKVDLSDRPFKVKT---GDGKEYTAKAVIIA 107
>gnl|CDD|183809 PRK12879, PRK12879, 3-oxoacyl-(acyl carrier protein) synthase III;
Reviewed.
Length = 325
Score = 28.3 bits (64), Expect = 3.8
Identities = 48/207 (23%), Positives = 69/207 (33%), Gaps = 69/207 (33%)
Query: 137 ISPFTVPGSIISLLSGNISIRNQLRGPNHAVTTACSSGAHAIGDASRLIAFGDA-DVMVA 195
+P + S S + + I N + AC+ + + A+ LI G V+V
Sbjct: 83 TTPDYLFPSTASQVQARLGIPN---AAAFDINAACAGFLYGLETANGLITSGLYKKVLVI 139
Query: 196 GGAEAPICRLGVASFAACRALSTRFNDDPTRASRPFD-QDRD-GFVMGEGAGALVLEDLE 253
G AE R S+ D DR + G+GAGA+VLE E
Sbjct: 140 G-AE--------------------------RLSKVTDYTDRTTCILFGDGAGAVVLEATE 172
Query: 254 HAKARGAKIYSEIIGY--GLSGDAFHI--------TMPPEDGNG--------------AY 289
+ I Y G GD I TM + +G A
Sbjct: 173 NE--------PGFIDYVLGTDGDGGDILYRTGLGTTMDRDALSGDGYIVQNGREVFKWAV 224
Query: 290 RCMSSA----IARAKLLPSDIDYINAH 312
R M + +A L DID++ H
Sbjct: 225 RTMPKGARQVLEKAGLTKDDIDWVIPH 251
>gnl|CDD|181597 PRK08963, fadI, 3-ketoacyl-CoA thiolase; Reviewed.
Length = 428
Score = 28.0 bits (63), Expect = 5.2
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 165 HAVTTACSSGAHAIGDASRLIAFGDADVMVAGGAE----API 202
++V+ AC++ A+ + + I G D+ +AGGA+ PI
Sbjct: 85 YSVSRACATSFQAVANVAESIMAGTIDIGIAGGADSSSVLPI 126
>gnl|CDD|182713 PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional.
Length = 304
Score = 28.0 bits (63), Expect = 5.3
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 18/58 (31%)
Query: 147 ISLLSGNISIRNQLRGPNHAVTTACSSGAHAIGDASRLIAFGDADVMVAGGAEAPICR 204
I+ ++GN+S+ TT +A +L+ F ++DV VA GA P+ R
Sbjct: 33 ITTVAGNVSVEK---------TTR---------NALKLLHFFNSDVPVAQGAAKPLVR 72
>gnl|CDD|179651 PRK03806, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 438
Score = 28.0 bits (63), Expect = 5.3
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 11/73 (15%)
Query: 2 RRVVVTGLGMITPLGCGVDVSWSRLIAGEVGIRHLDQKFDLEGLSSKIAGLIPVGNGSDG 61
++VV+ GLG +T L C VD +A V R +D + GL K+ + GS
Sbjct: 7 KKVVIIGLG-LTGLSC-VDF----FLARGVTPRVIDTRITPPGLD-KLPENVERHTGS-- 57
Query: 62 TFNYEDWILSSDL 74
N ++W+L++DL
Sbjct: 58 -LN-DEWLLAADL 68
>gnl|CDD|183606 PRK12578, PRK12578, acetyl-CoA acetyltransferase; Provisional.
Length = 385
Score = 27.9 bits (62), Expect = 5.4
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 9/58 (15%)
Query: 142 VPGSIISLLSGNISIRNQLRGPNHAVTTACSSGAHAIGDASRLIAFGDADVMVAGGAE 199
+ S L+G + +R V C++G A A +A G D+ +A G +
Sbjct: 62 PIVAEYSGLTGKVPLR---------VEAMCATGLAASLTAYTAVASGLVDMAIAVGVD 110
>gnl|CDD|183473 PRK12361, PRK12361, hypothetical protein; Provisional.
Length = 547
Score = 27.7 bits (62), Expect = 6.3
Identities = 7/30 (23%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 299 AKLLPSDIDYINAHGTSTIAD-TIELGAVE 327
+L P+D++ + ++ + I D T E ++
Sbjct: 106 CRLFPADLEKLKSNKITAILDVTAEFDGLD 135
>gnl|CDD|185634 PTZ00455, PTZ00455, 3-ketoacyl-CoA thiolase; Provisional.
Length = 438
Score = 27.2 bits (60), Expect = 7.6
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 160 LRGPNHAVTTACSSGAHAIGDASRLIAFGDADVMVAGGAE 199
L P V AC+SG A+ A + G +D+ + G E
Sbjct: 109 LYKPAMRVEGACASGGLAVQSAWEALLAGTSDIALVVGVE 148
>gnl|CDD|177338 PHA02057, PHA02057, ADP-ribosylation superfamily-like protein.
Length = 319
Score = 27.3 bits (60), Expect = 7.9
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 356 VEAAICNLAIRDGIVPA-TLNLDNPAKKTFIDL-VPHRAIKKNVNVAMSN 403
V +I + GIV L+++ P + + P+R IK N+++ S
Sbjct: 206 VSTSIAPIMYNHGIVECRNLHINKPTQVVRYNGDFPNRQIKINMHIDCSG 255
>gnl|CDD|180775 PRK06954, PRK06954, acetyl-CoA acetyltransferase; Provisional.
Length = 397
Score = 27.2 bits (60), Expect = 8.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 167 VTTACSSGAHAIGDASRLIAFGDADVMVAGGAEA 200
V C SG A A ++ G DV+VAGG E+
Sbjct: 89 VNKMCGSGMRAAMFAHDMLVAGSVDVIVAGGMES 122
>gnl|CDD|177925 PLN02287, PLN02287, 3-ketoacyl-CoA thiolase.
Length = 452
Score = 27.4 bits (61), Expect = 8.2
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 163 PNHAVTTACSSGAHAIGDASRLIAFGDADVMVAGGAE 199
P V CSSG A+ D + I G D+ + G E
Sbjct: 126 PVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGVE 162
>gnl|CDD|148063 pfam06232, ATS3, Embryo-specific protein 3, (ATS3). Family of
plant seed-specific proteins.
Length = 126
Score = 27.3 bits (61), Expect = 8.6
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 167 VTTACSSGAHAIGDASRLIAFGDAD 191
+ T+CSS A+ S IAFGDA
Sbjct: 21 IKTSCSSPAYTRDQIS--IAFGDAY 43
>gnl|CDD|180434 PRK06158, PRK06158, thiolase; Provisional.
Length = 384
Score = 26.9 bits (60), Expect = 8.9
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 295 AIARAKLLPSDIDYINAHGTSTIADTIE-LGAVERLMGDSCYHV--SMSSTKSAMGHLLG 351
A+A A L +D+D + T++ D + L E L G V +M S + HLL
Sbjct: 39 ALADAGLTMADVDGL---FTASPDDALWGLSVAEYL-GIRPRFVDGTMIGGSSFLAHLLP 94
Query: 352 AAGAVEAAICNLAI 365
AA A+EA +C++A+
Sbjct: 95 AALALEAGLCDVAL 108
>gnl|CDD|181792 PRK09352, PRK09352, 3-oxoacyl-(acyl carrier protein) synthase III;
Reviewed.
Length = 319
Score = 27.0 bits (61), Expect = 9.1
Identities = 39/167 (23%), Positives = 59/167 (35%), Gaps = 51/167 (30%)
Query: 167 VTTACSSGAHAIGDASRLIAFGDAD-VMVAGGAEAPICRLGVASFAACRALS--TRFNDD 223
++ ACS +A+ A + I G V+V G AE LS + D
Sbjct: 109 LSAACSGFVYALSTADQFIRSGAYKNVLVIG-AEK---------------LSRIVDWTD- 151
Query: 224 PTRASRPFDQDRDGFVMGEGAGALVLE----------DLEHAKARGAKIYSEIIGYGLSG 273
R++ F G+GAGA+VL L + G +Y G
Sbjct: 152 --RSTCVL------F--GDGAGAVVLGASEEPGILSTHLGSDGSYGDLLYLPGGGSRGPA 201
Query: 274 DAFHITMPPEDGNG----AYRCMSSAI----ARAKLLPSDIDYINAH 312
++ M +G A R ++ A L P DID++ H
Sbjct: 202 SPGYLRM---EGREVFKFAVRELAKVAREALEAAGLTPEDIDWLVPH 245
>gnl|CDD|181328 PRK08257, PRK08257, acetyl-CoA acetyltransferase; Validated.
Length = 498
Score = 27.2 bits (61), Expect = 9.2
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Query: 148 SLLSGNISIRNQLRGPNHAVTTACS--SGAHAIGDASRLIAFGDADVMVAGGAEA 200
LL+ + P V + S + +A+ IA G+ADV + GAEA
Sbjct: 69 GLLAERLGAD-----PARTVYSPVGGNSPQRLVNEAALRIAAGEADVALVAGAEA 118
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.319 0.136 0.402
Gapped
Lambda K H
0.267 0.0747 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 7,076,504
Number of extensions: 471194
Number of successful extensions: 1126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1023
Number of HSP's successfully gapped: 103
Length of query: 423
Length of database: 5,994,473
Length adjustment: 96
Effective length of query: 327
Effective length of database: 3,920,105
Effective search space: 1281874335
Effective search space used: 1281874335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.1 bits)