RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780534|ref|YP_003064947.1| acyl carrier protein
[Candidatus Liberibacter asiaticus str. psy62]
(85 letters)
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura
genomics center for infectious disease, ssgcid, lipid
bindi protein; NMR {Borrelia burgdorferi}
Length = 84
Score = 66.2 bits (162), Expect = 2e-12
Identities = 38/78 (48%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Query: 5 NDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEES 64
ND++F V+ +I QL KED+I +RF+E+L ADSLD+ EL+ + EE F +IPE
Sbjct: 7 NDEIFSKVRSIISEQL-DKKEDEITTDSRFVEDLNADSLDIYELLYLLEEAFDDKIPENE 65
Query: 65 ANKILTVKDAVDFIRKAK 82
AN+ TV D V+FI+K K
Sbjct: 66 ANEFETVGDVVNFIKKRK 83
>2l4b_A Acyl carrier protein; infectious disease, human granulocytic
anaplasmosis, ssgcid, structural genomics; NMR
{Anaplasma phagocytophilum}
Length = 88
Score = 61.0 bits (148), Expect = 6e-11
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 5 NDDVFEAVKEVILSQL--TSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPE 62
++++ V E ++ L ++ + + ++ DSLD V+L+M EE+FSLEI +
Sbjct: 6 SEEIKAQVMESVIGCLKLNDEQKQILSGTTNLAKDFNLDSLDFVDLIMSLEERFSLEISD 65
Query: 63 ESANKILTVKDAVDFIRK 80
E A K+ TV D +I
Sbjct: 66 EDAQKLETVDDICRYIAS 83
>2l3v_A ACP, acyl carrier protein; structural genomi seattle structural
genomics center for infectious disease, lipid binding
protein; NMR {Brucella melitensis}
Length = 79
Score = 60.4 bits (147), Expect = 9e-11
Identities = 42/76 (55%), Positives = 55/76 (72%), Gaps = 1/76 (1%)
Query: 7 DVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESAN 66
D E VK++++ L V D++ E A FI++LGADSLD VELVM FEE+F +EIP+++A
Sbjct: 4 DTAERVKKIVVEHL-GVDADKVTEGASFIDDLGADSLDTVELVMAFEEEFGVEIPDDAAE 62
Query: 67 KILTVKDAVDFIRKAK 82
ILTV DAV FI KA
Sbjct: 63 TILTVGDAVKFIDKAS 78
>1klp_A ACP, ACPM, meromycolate extension acyl carrier protein;
four-helix bundle, ligand transport; NMR {Mycobacterium
tuberculosis H37RV} SCOP: a.28.1.1
Length = 115
Score = 60.0 bits (145), Expect = 1e-10
Identities = 25/85 (29%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 1 MPNANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEI 60
MP +++ + E I+ ++T ++ +I F+++L DSL +VE+ + E+K+ ++I
Sbjct: 1 MPVTQEEIIAGIAE-IIEEVTGIEPSEITPEKSFVDDLDIDSLSMVEIAVQTEDKYGVKI 59
Query: 61 PEESANKILTVKDAVDFIRKAKQTN 85
P+E + TV D V +I+K ++ N
Sbjct: 60 PDEDLAGLRTVGDVVAYIQKLEEEN 84
>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus
subtilis} SCOP: a.28.1.1 PDB: 1hy8_A
Length = 81
Score = 59.1 bits (143), Expect = 2e-10
Identities = 37/81 (45%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Query: 2 PNANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIP 61
P + D E V ++I+ +L V E + A F E+LGAD LDVVELVM E++F +EI
Sbjct: 2 PLGSADTLERVTKIIVDRL-GVDEADVKLEASFKEDLGADXLDVVELVMELEDEFDMEIS 60
Query: 62 EESANKILTVKDAVDFIRKAK 82
+E A KI TV DAV++I+ +
Sbjct: 61 DEDAEKIATVGDAVNYIQNQQ 81
>2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria,
NADH:ubiquinone oxidereductase, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 57.3 bits (138), Expect = 9e-10
Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 2 PNANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIP 61
P + + + V V+ + +++ ++ F+++LG DSLD VE++M E++F EIP
Sbjct: 10 PLTLEGIQDRVLYVLKLYD-KIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIP 68
Query: 62 EESANKILTVKDAVDFIRKAK 82
+ A K++ ++ VD+I K
Sbjct: 69 DIDAEKLMCPQEIVDYIADKK 89
>3ce7_A Specific mitochodrial acyl carrier protein; malaria,
mitochondrial, ACP, fatty acid biosynthesis, lipid
synthesis, phosphopantetheine; 1.64A {Toxoplasma}
Length = 107
Score = 56.1 bits (135), Expect = 2e-09
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 2 PNANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIP 61
NA + + + L + V +E R E+ D LD VE V+ EE F + +P
Sbjct: 17 INAVTNYIVGMCQKFLQKGEKVTPSSKLEELRTREDRLWDCLDTVEFVLDVEEIFDVTVP 76
Query: 62 EESANKILTVKDAVDFIRKAKQ 83
+E A+ T+++ DF+ +
Sbjct: 77 DEVADNFQTLQEIADFVVSERA 98
>1l0i_A Acyl carrier protein; acyl chain binding, fatty acid
biosynthesis, lipid transport; HET: PSR; 1.20A
{Escherichia coli} SCOP: a.28.1.1 PDB: 1l0h_A 2fhs_C
1acp_A 1t8k_A 2fac_A* 2fad_A* 2fae_A* 2k92_A 2k93_A
2k94_A
Length = 78
Score = 55.6 bits (134), Expect = 3e-09
Identities = 37/76 (48%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Query: 7 DVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESAN 66
+ E VK++I QL VK++++ +A F+E+LGADSLD VELVM EE+F EIP+E A
Sbjct: 3 TIEERVKKIIGEQL-GVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAE 61
Query: 67 KILTVKDAVDFIRKAK 82
K+ TV+ A+D+I +
Sbjct: 62 KMTTVQAAIDYINGHQ 77
>2kw2_A Specialized acyl carrier protein; structural genomics, northeast
structural genomics consortiu PSI-2, protein structure
initiative; NMR {Rhodopseudomonas palustris} PDB:
3lmo_A
Length = 101
Score = 54.5 bits (131), Expect = 6e-09
Identities = 15/77 (19%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 7 DVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESAN 66
F+ V I+++ + + I + I++LG DSLD +++ ++ F +++P E
Sbjct: 3 STFDRVAT-IIAETCDIPRETITPESHAIDDLGIDSLDFLDIAFAIDKAFGIKLPLEKWT 61
Query: 67 KILTVKDAVDFIRKAKQ 83
+ + A +
Sbjct: 62 QEVNDGKATTEQYFVLK 78
>3lmo_A Specialized acyl carrier protein; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; 2.00A
{Rhodopseudomonas palustris}
Length = 101
Score = 53.7 bits (129), Expect = 1e-08
Identities = 15/72 (20%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 7 DVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESAN 66
F+ V I+++ + + I + I++LG DSLD +++ ++ F +++P E
Sbjct: 3 STFDRVAT-IIAETCDIPRETITPESHAIDDLGIDSLDFLDIAFAIDKAFGIKLPLEKWT 61
Query: 67 KILTVKDAVDFI 78
+ + A
Sbjct: 62 QEVNDGKATTEQ 73
>3ejb_A Acyl carrier protein; protein-protein complex, cytochrome P450
fold, carrier protein, 4-helix bundle, cytoplasm; HET:
ZMP HTG HEM; 2.00A {Escherichia coli} SCOP: a.28.1.1
PDB: 3ejd_A* 3eje_A*
Length = 97
Score = 52.4 bits (125), Expect = 2e-08
Identities = 38/77 (49%), Positives = 54/77 (70%), Gaps = 1/77 (1%)
Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65
+ E VK++I QL VK++++ +A F+E+LGADSLD VELVM EE+F EIP+E A
Sbjct: 21 STIEERVKKIIGEQL-GVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEA 79
Query: 66 NKILTVKDAVDFIRKAK 82
KI TV+ A+D+I +
Sbjct: 80 EKITTVQAAIDYINGHQ 96
>2amw_A Hypothetical protein NE2163; all helical protein, structural
genomics, PSI, protein structure initiative; NMR
{Nitrosomonas europaea}
Length = 83
Score = 51.6 bits (124), Expect = 4e-08
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Query: 7 DVFEAVKEVILSQL-TSVKEDQIV-ESARFIEELGADSLDVVELVMIFEEKFSLEIPEE- 63
EAV+ ++ L ++ + S DS+ VV ++ EE F + ++
Sbjct: 2 QHLEAVRNILGDVLNLGERKHTLTASSVLLGNIPELDSMAVVNVITALEEYFDFSVDDDE 61
Query: 64 -SANKILTVKDAVDFIRK 80
SA T+ F+
Sbjct: 62 ISAQTFETLGSLALFVEH 79
>1nq4_A Oxytetracycline polyketide synthase acyl carrier protein;
solution structure, dynamics, ACP, biosynthetic
protein; NMR {Streptomyces rimosus} SCOP: a.28.1.1
Length = 95
Score = 48.7 bits (116), Expect = 3e-07
Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65
D+ ++E + S+ VE F + LG DSL ++ V E + +++ +++
Sbjct: 7 SDLLTLLRE-CAGEEESIDLGGDVEDVAF-DALGYDSLALLNTVGRIERDYGVQLGDDAV 64
Query: 66 NKILTVKDAVDFIRKA 81
K T + ++ +
Sbjct: 65 EKATTPRALIEMTNAS 80
>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle,
biosynthetic protein; NMR {Spinacia oleracea} PDB:
2fva_A* 2fve_A 2fvf_A*
Length = 82
Score = 48.4 bits (115), Expect = 4e-07
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 4 ANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEE 63
A + + V +++ +L ++ D +V + +LGADSLD VE+VM EE+F + + E+
Sbjct: 1 AKKETIDKVSDIVKEKL-ALGADVVVTADSEFSKLGADSLDTVEIVMNLEEEFGINVDED 59
Query: 64 SANKILTVKDAVDFIRKAKQ 83
A I T++ A D I +
Sbjct: 60 KAQDISTIQQAADVIEGLLE 79
>2kci_A Putative acyl carrier protein; alpha, ACP, PCP, structural
genomics, unknown function, PSI- 2, protein structure
initiative; NMR {Geobacter metallireducens gs-15} PDB:
2kjs_A*
Length = 87
Score = 46.8 bits (111), Expect = 1e-06
Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 1/73 (1%)
Query: 8 VFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANK 67
+A+ I Q+ + + DSL + L++ E + ++ K
Sbjct: 3 TLDALTP-IFRQVFDDDSIVLTRETSANDIDAWDSLSHMNLIVSLEVHYKIKFALGELQK 61
Query: 68 ILTVKDAVDFIRK 80
+ V D D + K
Sbjct: 62 LKNVGDLADLVDK 74
>3gzm_A Acyl carrier protein; helix bundle, phosphopantetheine, fatty
acid biosynthesis, lipid synthesis, transit peptide,
biosynthetic protein; HET: PNS; 1.80A {Plasmodium
falciparum} PDB: 3gzl_A* 2fq0_A* 2fq2_A*
Length = 81
Score = 46.9 bits (111), Expect = 1e-06
Identities = 37/78 (47%), Positives = 57/78 (73%), Gaps = 1/78 (1%)
Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65
F+ +K++I QL SV+ED+I ++ F ++LGADSLD+VEL+M EEKF++ I ++ A
Sbjct: 4 KSTFDDIKKIISKQL-SVEEDKIQMNSNFTKDLGADSLDLVELIMALEEKFNVTISDQDA 62
Query: 66 NKILTVKDAVDFIRKAKQ 83
KI TV+DA+D+I K +
Sbjct: 63 LKINTVQDAIDYIEKNNK 80
>2ehs_A ACP, acyl carrier protein; lipid transport, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 1.30A {Aquifex aeolicus VF5} PDB:
2eht_A
Length = 77
Score = 46.1 bits (109), Expect = 2e-06
Identities = 38/73 (52%), Positives = 57/73 (78%), Gaps = 1/73 (1%)
Query: 8 VFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANK 67
+ E VKE+I QL V++++I A+F+E+LGADSLDVVEL+M FEE+F +EIP+E A K
Sbjct: 2 LEERVKEIIAEQL-GVEKEKITPEAKFVEDLGADSLDVVELIMAFEEEFGIEIPDEDAEK 60
Query: 68 ILTVKDAVDFIRK 80
I TV D ++++++
Sbjct: 61 IQTVGDVINYLKE 73
>1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle; NMR
{Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A
Length = 80
Score = 46.1 bits (109), Expect = 2e-06
Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 4 ANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIP-- 61
A++ + V + IL+ LT + + E DS+ V+L++ + +F ++ P
Sbjct: 1 ADEAIKNGVLD-ILADLTGSDDVKKNLDLNLFETGLLDSMGTVQLLLELQSQFGVDAPVS 59
Query: 62 EESANKILTVKDAVDFIRKAK 82
E + T + + +A+
Sbjct: 60 EFDRKEWDTPNKIIAKVEQAQ 80
>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine,
lipid transport; NMR {Streptomyces coelicolor}
Length = 82
Score = 45.2 bits (106), Expect = 3e-06
Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 1 MPNANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEI 60
M +++ + E++ ED ++ + ++L DSL +VE+V+ EE+F ++I
Sbjct: 1 MAATQEEIVAGLAEIVNEIAGIPVEDVKLDKSFT-DDLDVDSLSMVEVVVAAEERFDVKI 59
Query: 61 PEESANKILTVKDAVDFIRKAK 82
P++ + TV DA +I +
Sbjct: 60 PDDDVKNLKTVGDATKYILDHQ 81
>2qnw_A Acyl carrier protein; malaria, SGC, structural genomics
consortium, fatty acid biosynthesis, lipid synthesis,
phosphopantetheine; 1.90A {Toxoplasma gondii RH}
Length = 82
Score = 45.1 bits (106), Expect = 4e-06
Identities = 38/78 (48%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Query: 5 NDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEES 64
+ + E VK+V+ QL + + FI++L ADSLD VELVM FEEKF + IP+E
Sbjct: 5 DRPLLERVKDVVADQLGVDRARI-NPESNFIKDLDADSLDSVELVMAFEEKFGVSIPDEE 63
Query: 65 ANKILTVKDAVDFIRKAK 82
A+KI TV+DA+ +I KAK
Sbjct: 64 ASKIATVQDALSYIEKAK 81
>1or5_A Acyl carrier protein; ACP, biosynthesis, frenolicin, holo,
polyketide synthase, PKS, biosynthetic protein; NMR
{Streptomyces roseofulvus} SCOP: a.28.1.1
Length = 83
Score = 44.8 bits (106), Expect = 4e-06
Identities = 12/75 (16%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 8 VFEAVKEVILSQL-TSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESAN 66
+ +K+++ D E +LG DSL ++E + ++++ + + +E+
Sbjct: 5 TVDDLKKLLAETAGEDDSVDLAGELDTPFVDLGYDSLALLETAAVLQQRYGIALTDETVG 64
Query: 67 KILTVKDAVDFIRKA 81
++ T ++ +D +
Sbjct: 65 RLGTPRELLDEVNTT 79
>1x3o_A Acyl carrier protein; structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; 1.50A
{Thermus thermophilus HB8}
Length = 80
Score = 44.7 bits (105), Expect = 4e-06
Identities = 40/75 (53%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65
++FE VK VI +L V+ +++ ARFIE+LGADSLD VEL+M E++F LEI +E A
Sbjct: 4 QEIFEKVKAVIADKL-QVEPEKVTLEARFIEDLGADSLDTVELIMGLEDEFGLEISDEEA 62
Query: 66 NKILTVKDAVDFIRK 80
KI TVKDAV++I+
Sbjct: 63 EKIRTVKDAVEYIKA 77
>2cgq_A Acyl carrier protein ACPA; RV0033, protein transport,
phosphopantetheine; 1.83A {Mycobacterium tuberculosis}
Length = 113
Score = 44.4 bits (104), Expect = 7e-06
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 11 AVKEVILSQLTSVKEDQ--IVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKI 68
A++E I + + + I + +++LG DSL + +L+ E++F + I A I
Sbjct: 26 AMEEAINATIQRILRTDRGITANQVLVDDLGFDSLKLFQLITELEDEFDIAISFRDAQNI 85
Query: 69 LTVKDAVDFI 78
TV D +
Sbjct: 86 KTVGDVYTSV 95
>2jq4_A AGR_C_4658P, hypothetical protein ATU2571; ATC2521, unknown
function, ATC, structural genomics, PSI-2, protein
structure initiative; NMR {Agrobacterium tumefaciens}
SCOP: a.28.1.1
Length = 105
Score = 43.8 bits (103), Expect = 9e-06
Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 5/83 (6%)
Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65
+ ++E++ + + G S V+L++ EE F +E P+
Sbjct: 21 GHMNATIREILAKFGQLPTPVDTIADEADLYAAGLSSFASVQLMLGIEEAFDIEFPDNLL 80
Query: 66 NK-----ILTVKDAVDFIRKAKQ 83
N+ I ++D V I K+
Sbjct: 81 NRKSFASIKAIEDTVKLILDGKE 103
>1fh1_A NODF, nodulation protein F; ROOT nodulation factor, protein
backbone fold, lipid binding protein; NMR {Rhizobium
leguminosarum} SCOP: i.11.1.1
Length = 92
Score = 42.5 bits (100), Expect = 3e-05
Identities = 14/80 (17%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 6 DDVFEAVKEV---ILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPE 62
++ A+ ++ + TSV +I LG DSL + +++ E+ + ++I
Sbjct: 7 LEIISAINKLVKAENGERTSVALGEITTDTEL-TSLGIDSLGLADVLWDLEQLYGIKIEM 65
Query: 63 ESANKILTVKDAVDFIRKAK 82
+A+ + + D + +
Sbjct: 66 NTADAWSNLNNIGDVVEAVR 85
>1af8_A Actinorhodin polyketide synthase acyl carrier protein; solution
structure, structure, antibiotic biosynthesis; NMR
{Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A
2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A*
2kgd_A* 2kge_A*
Length = 86
Score = 41.1 bits (96), Expect = 6e-05
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65
DD+ A+ E + RF E++G DSL ++E E ++ + IP++ A
Sbjct: 8 DDLRRALVEC-AGETDGTDLSGDFLDLRF-EDIGYDSLALMETAARLESRYGVSIPDDVA 65
Query: 66 NKILTVKDAVDFIRKA 81
++ T ++ +D I A
Sbjct: 66 GRVDTPRELLDLINGA 81
>2kr5_A PKS, aflatoxin biosynthesis polyketide synthase; acyl carrrier
protein, holo, phosphopantetheine, transport protein;
HET: PNS; NMR {Aspergillus parasiticus}
Length = 89
Score = 40.4 bits (95), Expect = 9e-05
Identities = 16/77 (20%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 4 ANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEE 63
+++ +AV ++S+ + + +++ + + F ++G DSL + + F E L++ E
Sbjct: 8 VSNEKLDAVMR-VVSEESGIALEELTDDSNF-ADMGIDSLSSMVIGSRFREDLGLDLGPE 65
Query: 64 SAN--KILTVKDAVDFI 78
+ TV+ DF+
Sbjct: 66 FSLFIDCTTVRALKDFM 82
>1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, protein
structure initiative, PSI, joint center for structural
genomics; 2.00A {Thermotoga maritima MSB8} SCOP:
a.28.1.1
Length = 100
Score = 35.4 bits (81), Expect = 0.003
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65
+ E I S+ + + E F +ELG DS+DV++LVM FE++F+L I +E
Sbjct: 16 KKLIAKFVE-IASEKMGKDLETVDEENTF-KELGFDSIDVIDLVMFFEDEFALRIEDEEI 73
Query: 66 NKILTVKDAVDFIRK 80
+KI VKD +D + K
Sbjct: 74 SKIRKVKDLIDIVIK 88
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 33.6 bits (76), Expect = 0.011
Identities = 10/45 (22%), Positives = 22/45 (48%)
Query: 17 LSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIP 61
++ + +++ + + +LG DSL VE+ I E + L +
Sbjct: 2132 VAHILGIRDVASINPDSTLVDLGLDSLMGVEVRQILEREHDLVLS 2176
>2roq_A Enterobactin synthetase component F; T-TE, PCP, thioesterase,
peptidyl carrier protein, thiolation domain,
non-ribosomal peptide synthetase; NMR {Escherichia
coli}
Length = 343
Score = 28.4 bits (62), Expect = 0.37
Identities = 4/25 (16%), Positives = 11/25 (44%)
Query: 37 ELGADSLDVVELVMIFEEKFSLEIP 61
LG +L ++L + + ++
Sbjct: 43 ALGGHALLAMKLAAQLSRQVARQVT 67
>3dtb_A Phosphoenolpyruvate carboxykinase, cytosolic [GTP];
gluconeogenesis, lyase, cytoplasm, decarboxylase,
GTP-binding, nucleotide-binding; HET: GDP 1PE EPE; 1.30A
{Rattus norvegicus} PDB: 2qey_A* 2qf1_A* 2qew_A* 2rk7_A
2rk8_A 2rka_A* 2rkd_A 2rke_A 2qf2_A* 3dt2_A* 3dt7_A*
3dt4_A* 1khb_A* 1khe_A* 1khf_A* 1khg_A 1m51_A* 1nhx_A*
2gmv_A*
Length = 624
Score = 28.3 bits (63), Expect = 0.44
Identities = 7/63 (11%), Positives = 25/63 (39%), Gaps = 13/63 (20%)
Query: 1 MPNANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEI 60
+P + + + +V + +L + ++ + I++ E++ + ++
Sbjct: 560 VPKEDALNLKGLGDVNVEELFGISKEFWEKEVEEIDKY-------------LEDQVNADL 606
Query: 61 PEE 63
P E
Sbjct: 607 PYE 609
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein,
ligase phosphoprotein, termination module,
phosphopantetheine; 2.6A {Bacillus subtilis}
Length = 1304
Score = 27.4 bits (60), Expect = 0.78
Identities = 5/45 (11%), Positives = 19/45 (42%)
Query: 37 ELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKA 81
LG +L + +++ +++P + + T+ +++
Sbjct: 998 ALGGHALKAMTAASRIKKELGIDLPVKLLFEAPTIAGISAYLKNG 1042
>2cg5_B Fatty acid synthase; transferase/hydrolase, transferase/hydrolase
(complex), fatty acid biosynthesis, phosphopantetheine
transferase, FAsn, ACP; HET: COA; 2.7A {Homo sapiens}
PDB: 2png_A
Length = 91
Score = 27.2 bits (60), Expect = 0.88
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 7 DVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIP 61
D + E + L + + + LG D+L VE+ E + +L +
Sbjct: 6 DSQRDLVEAVAHILGIRDLAAVNLDSSLAD-LGLDALMSVEVRQTLERELNLVLS 59
>2i7g_A Monooxygenase, AGR_C_4197P; alpha-beta, TIM barrel, helix-bundle,
structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.73A {Agrobacterium tumefaciens
str}
Length = 376
Score = 27.3 bits (59), Expect = 0.92
Identities = 4/22 (18%), Positives = 11/22 (50%)
Query: 26 DQIVESARFIEELGADSLDVVE 47
+++E +++G D + E
Sbjct: 49 RELLEEIELADQVGLDVFGLGE 70
>1z69_A COG2141, coenzyme F420-dependent N(5),N(10)-
methylenetetrahydromethanopterin reductase; (alpha,
beta)8 barrel, oxidoreductase; HET: F42 1PG; 2.61A
{Methanosarcina barkeri}
Length = 327
Score = 26.7 bits (57), Expect = 1.4
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 26 DQIVESARFIEELGADSLDVVE 47
+I A+ E+ G D + + +
Sbjct: 14 LKIAYYAKLSEQQGFDHVWITD 35
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 26.7 bits (58), Expect = 1.4
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 15/78 (19%)
Query: 5 NDDVFEAVKEVILSQ-LTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEE 63
N + E ++EVI+ + L + + E+A + D +D+ EIPE
Sbjct: 916 NPEKKEMIQEVIVEEDLEPFEASK--ETAEQFKHQHGDKVDI------------FEIPET 961
Query: 64 SANKILTVKDAVDFIRKA 81
+ +K A +I KA
Sbjct: 962 GEYSVKLLKGATLYIPKA 979
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle,
phosphorylation, ATP- binding, cell division, disease
mutation, kinase, nucleotide-binding; 3.00A {Homo
sapiens}
Length = 308
Score = 26.7 bits (58), Expect = 1.5
Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
Query: 10 EAVKEV-ILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKI 68
V+EV +L +L + + +V D V LV ++ +++
Sbjct: 57 STVREVALLRRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPG 116
Query: 69 LTVKDAVDFIR 79
L + D +R
Sbjct: 117 LPAETIKDLMR 127
>3c8n_A Probable F420-dependent glucose-6-phosphate dehydrogenase FGD1;
TIM barrel, non-prolyl CIS-peptide, oxidoreductase;
1.90A {Mycobacterium tuberculosis H37RV} PDB: 3b4y_A
Length = 356
Score = 25.8 bits (55), Expect = 2.4
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 26 DQIVESARFIEELGADSLDVVE 47
++VE A E G DS V +
Sbjct: 38 RELVELAVAAEAHGMDSATVSD 59
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic
biosynthesis, condensation domain, peptide bond
formation, ligase, antibiotics; 1.85A {Brevibacillus
brevis}
Length = 520
Score = 25.8 bits (55), Expect = 2.7
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 37 ELGADSLDVVELVMIFEEKFSLEIP 61
LG SL + ++ ++ ++IP
Sbjct: 36 ALGGHSLRAMRVLSSMHNEYQVDIP 60
>1luc_B Bacterial luciferase; monooxygenase, flavoprotein; 1.50A {Vibrio
harveyi} SCOP: c.1.16.1 PDB: 1brl_B 1bsl_A 1xkj_A
3fgc_B*
Length = 324
Score = 25.2 bits (54), Expect = 3.9
Identities = 6/22 (27%), Positives = 17/22 (77%)
Query: 26 DQIVESARFIEELGADSLDVVE 47
++++++A ++++L D+L V E
Sbjct: 22 EEMLDTAHYVDQLKFDTLAVYE 43
>2wgk_A 3,6-diketocamphane 1,6 monooxygenase; camphor pathway,
oxidoreductase; 2.00A {Pseudomonas putida}
Length = 378
Score = 24.8 bits (53), Expect = 5.2
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 26 DQIVESARFIEELGADSL 43
D ++SA + +G DS+
Sbjct: 24 DWGIKSAVQADSVGIDSM 41
>2faf_A Phosphoenolpyruvate carboxykinase; pepck, phosphoryl transfer,
lyase; HET: 20S EPE 1PE; 1.70A {Gallus gallus} PDB:
2fah_A* 2qzy_A*
Length = 608
Score = 24.0 bits (52), Expect = 8.3
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 13/63 (20%)
Query: 1 MPNANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEI 60
+P D + V SQL +++ E R + E + E F ++
Sbjct: 544 VPKEGDLDLGGLPGVDYSQLFPMEKGFWEEECRQLREY-------------YGENFGADL 590
Query: 61 PEE 63
P +
Sbjct: 591 PRD 593
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.313 0.131 0.330
Gapped
Lambda K H
0.267 0.0492 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 656,179
Number of extensions: 25934
Number of successful extensions: 153
Number of sequences better than 10.0: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 57
Length of query: 85
Length of database: 5,693,230
Length adjustment: 53
Effective length of query: 32
Effective length of database: 4,408,298
Effective search space: 141065536
Effective search space used: 141065536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.6 bits)