BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780534|ref|YP_003064947.1| acyl carrier protein
[Candidatus Liberibacter asiaticus str. psy62]
         (85 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780534|ref|YP_003064947.1| acyl carrier protein [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 85

 Score =  165 bits (418), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 85/85 (100%), Positives = 85/85 (100%)

Query: 1  MPNANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEI 60
          MPNANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEI
Sbjct: 1  MPNANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEI 60

Query: 61 PEESANKILTVKDAVDFIRKAKQTN 85
          PEESANKILTVKDAVDFIRKAKQTN
Sbjct: 61 PEESANKILTVKDAVDFIRKAKQTN 85


>gi|254780276|ref|YP_003064689.1| dihydrodipicolinate synthase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 292

 Score = 21.2 bits (43), Expect = 3.8,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 19/31 (61%)

Query: 16  ILSQLTSVKEDQIVESARFIEELGADSLDVV 46
           +++ + S    + VE A++   +GAD+L VV
Sbjct: 73  VMAGIGSNNTRESVELAQYAHSIGADALLVV 103


>gi|255764493|ref|YP_003065056.2| hypothetical protein CLIBASIA_02650 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 60

 Score = 20.8 bits (42), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 7/17 (41%), Positives = 13/17 (76%)

Query: 62 EESANKILTVKDAVDFI 78
          + S+ K+  VKDA+D++
Sbjct: 23 QNSSKKLKIVKDAIDYV 39


>gi|254780787|ref|YP_003065200.1| translation initiation factor IF-2 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 884

 Score = 20.4 bits (41), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 7/12 (58%), Positives = 9/12 (75%)

Query: 34  FIEELGADSLDV 45
           F+E +G D LDV
Sbjct: 512 FVESMGGDILDV 523


>gi|255764487|ref|YP_003065115.2| heat shock protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 219

 Score = 20.0 bits (40), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 53 EEKFSLEIPEESANKILTVKD 73
          EEK  + IPEES N+    +D
Sbjct: 25 EEKSEINIPEESLNQSEEFRD 45


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.313    0.131    0.330 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,912
Number of Sequences: 1233
Number of extensions: 1348
Number of successful extensions: 8
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 85
length of database: 328,796
effective HSP length: 54
effective length of query: 31
effective length of database: 262,214
effective search space:  8128634
effective search space used:  8128634
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.0 bits)
S2: 31 (16.5 bits)