HHsearch alignment for GI: 254780535 and conserved domain: COG1090
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only].
Probab=98.24 E-value=1.5e-05 Score=55.81 Aligned_cols=198 Identities=21% Similarity=0.222 Sum_probs=116.8
Q ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 99938998578999999998899799997898999999997213894899988899999999999999999769989996
Q gi|254780535|r 9 ALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFPANFSDRVSVEYLSKRVNEEMGGVDILVN 88 (247)
Q Consensus 9 ~lITG~~~GIG~~ia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~g~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iDilVn 88 (247)
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~---~~------~---~v~~~~~~~~~~~----~--~~DavIN 62 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGHQVTILTRRPPKASQN---LH------P---NVTLWEGLADALT----L--GIDAVIN 62 (297)
T ss_pred CEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHH---CC------C---CCCCCCHHHHCCC----C--CCCEEEE
T ss_conf 95735665016899999984898699997478502332---47------6---5334301244036----7--8778998
Q ss_pred CCCCCCCCCHHHCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCC-CCEEEEECCHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 789899887544399999999999-88999999999999998629-9849994762338899985778988999999999
Q gi|254780535|r 89 NAGIVRDSLFMRARYEDWDDVLSV-NLTSAFLLTRQLVPLMIRNR-FGRVINITSVVGFTGNAGQVNYCAAKSGLTGFTK 166 (247)
Q Consensus 89 nAg~~~~~~~~~~~~~~w~~~~~~-Nl~~~~~~~~~~~~~m~~~~-~G~IInisS~~~~~~~~~~~~Y~~sK~ai~~ltk 166 (247)
T Consensus 63 LAG~~I~~r-------rWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P~~~isaSAvGyYG~~~~~~~tE~~~~g~~Fla 135 (297)
T COG1090 63 LAGEPIAER-------RWTEKQKEEIRQSRINTTEKLVELIAASETKPKVLISASAVGYYGHSGDRVVTEESPPGDDFLA 135 (297)
T ss_pred CCCCCCCCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCEEEEECCCCCEEEECCCCCCCCHHH
T ss_conf 889815446-------5788999999997768999999999852679808985245777558886464157888777599
Q ss_pred HHHHHHHH-------HCCEEEEECCCCCCCHH---HHCCCHHHHHHHHHCCCCC------CCCCHHHHHHHHHHHHCHHH
Q ss_conf 99999632-------28599634338817934---4228989999998539798------88579999999999738887
Q gi|254780535|r 167 ALAQETGR-------RNVTVNCVAPGFIGSDM---TVNLTEDQKGKIISSIPMK------RMGAVDDIAAAVLYLSSLEA 230 (247)
Q Consensus 167 ~lA~e~~~-------~gIrvN~IaPG~i~T~~---~~~~~~~~~~~~~~~~pl~------R~~~pedia~~v~fL~S~~~ 230 (247)
T Consensus 136 ~lc~~WE~~a~~a~~~gtRvvllRtGvVLs~~GGaL~~m~~~fk~gl--GG~~GsGrQ~~SWIhieD~v~~I~fll~~-- 211 (297)
T COG1090 136 QLCQDWEEEALQAQQLGTRVVLLRTGVVLSPDGGALGKMLPLFKLGL--GGKLGSGRQWFSWIHIEDLVNAILFLLEN-- 211 (297)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCHHHHCCHHHHCC--CCCCCCCCCEEEEEEHHHHHHHHHHHHHC--
T ss_conf 99999999986664068469999887786178860343101355225--77158987303433299999999999847--
Q ss_pred CCCCC
Q ss_conf 87788
Q gi|254780535|r 231 SYVTG 235 (247)
Q Consensus 231 ~~itG 235 (247)
T Consensus 212 ~~lsG 216 (297)
T COG1090 212 EQLSG 216 (297)
T ss_pred CCCCC
T ss_conf 57777