HHsearch alignment for GI: 254780535 and conserved domain: PRK09186

>PRK09186 flagellin modification protein A; Provisional.
Probab=100.00  E-value=0  Score=467.38  Aligned_cols=239  Identities=31%  Similarity=0.459  Sum_probs=220.4

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCC--CCEEEEECCCCCHHHHHHHHHHHHHHHC
Q ss_conf             88778999389985789999999988997999978989999999972138--9489998889999999999999999976
Q gi|254780535|r    4 LTGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDV--DRFLLFPANFSDRVSVEYLSKRVNEEMG   81 (247)
Q Consensus         4 l~~K~~lITG~~~GIG~~ia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~--g~~~~~~~Dv~~~~~~~~~~~~~~~~~g   81 (247)
T Consensus         2 L~gK~~lVTGgs~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~Dvt~~~~v~~~~~~~~~~~g   81 (255)
T PRK09186          2 LEGKTILITGAGGLIGSALVKAILEAGGIVIAADINKEALNKLLESLGTIEKTKLTLVELDITDQESLEEFLSKSQERYG   81 (255)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf             89598999795868999999999987999999969889999999999870598079998468999999999999999819


Q ss_pred             CCCEEEECCCCC---CCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCC----------C
Q ss_conf             998999678989---988754439999999999988999999999999998629984999476233889----------9
Q gi|254780535|r   82 GVDILVNNAGIV---RDSLFMRARYEDWDDVLSVNLTSAFLLTRQLVPLMIRNRFGRVINITSVVGFTG----------N  148 (247)
Q Consensus        82 ~iDilVnnAg~~---~~~~~~~~~~~~w~~~~~~Nl~~~~~~~~~~~~~m~~~~~G~IInisS~~~~~~----------~  148 (247)
T Consensus        82 ~id~lVnnA~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IVnisSi~g~~~~~~~~~~g~~~  161 (255)
T PRK09186         82 KIDGAVNCAYPRNKQYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGGSLVNISSIYGVVAPKFEIYEGTSM  161 (255)
T ss_pred             CCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHCCCCCCCCCCCCC
T ss_conf             97789975766787677770109999999999998399999999999988742897389956678734764211268765


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCH
Q ss_conf             98577898899999999999999632285996343388179344228989999998539798885799999999997388
Q gi|254780535|r  149 AGQVNYCAAKSGLTGFTKALAQETGRRNVTVNCVAPGFIGSDMTVNLTEDQKGKIISSIPMKRMGAVDDIAAAVLYLSSL  228 (247)
Q Consensus       149 ~~~~~Y~~sK~ai~~ltk~lA~e~~~~gIrvN~IaPG~i~T~~~~~~~~~~~~~~~~~~pl~R~~~pedia~~v~fL~S~  228 (247)
T Consensus       162 ~~~~~Y~asKaal~~ltr~lA~e~a~~gIrVN~VaPG~i~~~~----~~~~~~~~~~~~~~~~~~~p~dia~~v~fL~Sd  237 (255)
T PRK09186        162 TSPVEYAAIKSGIIHLTKYLAKYFKDSNIRVNCVSPGGILDNQ----PEAFLNAYKKSCNGKGMLDPEDICGSLVFLLSD  237 (255)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCC----CHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC
T ss_conf             4467679988999999999999967589899998557688999----899999998635577998999999999999570


Q ss_pred             HHCCCCCCEEEECCCEEC
Q ss_conf             878778868996895041
Q gi|254780535|r  229 EASYVTGQTIHVNGGMAM  246 (247)
Q Consensus       229 ~~~~itG~~i~vDGG~~~  246 (247)
T Consensus       238 ~s~~iTGq~i~VDGG~sl  255 (255)
T PRK09186        238 QSKYITGQNIIVDDGFSL  255 (255)
T ss_pred             HHCCCCCCEEEECCCCCC
T ss_conf             536801852883858066