HHsearch alignment for GI: 254780535 and conserved domain: PRK09186
>PRK09186 flagellin modification protein A; Provisional.
Probab=100.00 E-value=0 Score=467.38 Aligned_cols=239 Identities=31% Similarity=0.459 Sum_probs=220.4
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCC--CCEEEEECCCCCHHHHHHHHHHHHHHHC
Q ss_conf 88778999389985789999999988997999978989999999972138--9489998889999999999999999976
Q gi|254780535|r 4 LTGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDV--DRFLLFPANFSDRVSVEYLSKRVNEEMG 81 (247)
Q Consensus 4 l~~K~~lITG~~~GIG~~ia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~--g~~~~~~~Dv~~~~~~~~~~~~~~~~~g 81 (247)
T Consensus 2 L~gK~~lVTGgs~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~Dvt~~~~v~~~~~~~~~~~g 81 (255)
T PRK09186 2 LEGKTILITGAGGLIGSALVKAILEAGGIVIAADINKEALNKLLESLGTIEKTKLTLVELDITDQESLEEFLSKSQERYG 81 (255)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 89598999795868999999999987999999969889999999999870598079998468999999999999999819
Q ss_pred CCCEEEECCCCC---CCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCC----------C
Q ss_conf 998999678989---988754439999999999988999999999999998629984999476233889----------9
Q gi|254780535|r 82 GVDILVNNAGIV---RDSLFMRARYEDWDDVLSVNLTSAFLLTRQLVPLMIRNRFGRVINITSVVGFTG----------N 148 (247)
Q Consensus 82 ~iDilVnnAg~~---~~~~~~~~~~~~w~~~~~~Nl~~~~~~~~~~~~~m~~~~~G~IInisS~~~~~~----------~ 148 (247)
T Consensus 82 ~id~lVnnA~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IVnisSi~g~~~~~~~~~~g~~~ 161 (255)
T PRK09186 82 KIDGAVNCAYPRNKQYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGGSLVNISSIYGVVAPKFEIYEGTSM 161 (255)
T ss_pred CCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHCCCCCCCCCCCCC
T ss_conf 97789975766787677770109999999999998399999999999988742897389956678734764211268765
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCH
Q ss_conf 98577898899999999999999632285996343388179344228989999998539798885799999999997388
Q gi|254780535|r 149 AGQVNYCAAKSGLTGFTKALAQETGRRNVTVNCVAPGFIGSDMTVNLTEDQKGKIISSIPMKRMGAVDDIAAAVLYLSSL 228 (247)
Q Consensus 149 ~~~~~Y~~sK~ai~~ltk~lA~e~~~~gIrvN~IaPG~i~T~~~~~~~~~~~~~~~~~~pl~R~~~pedia~~v~fL~S~ 228 (247)
T Consensus 162 ~~~~~Y~asKaal~~ltr~lA~e~a~~gIrVN~VaPG~i~~~~----~~~~~~~~~~~~~~~~~~~p~dia~~v~fL~Sd 237 (255)
T PRK09186 162 TSPVEYAAIKSGIIHLTKYLAKYFKDSNIRVNCVSPGGILDNQ----PEAFLNAYKKSCNGKGMLDPEDICGSLVFLLSD 237 (255)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCC----CHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 4467679988999999999999967589899998557688999----899999998635577998999999999999570
Q ss_pred HHCCCCCCEEEECCCEEC
Q ss_conf 878778868996895041
Q gi|254780535|r 229 EASYVTGQTIHVNGGMAM 246 (247)
Q Consensus 229 ~~~~itG~~i~vDGG~~~ 246 (247)
T Consensus 238 ~s~~iTGq~i~VDGG~sl 255 (255)
T PRK09186 238 QSKYITGQNIIVDDGFSL 255 (255)
T ss_pred HHCCCCCCEEEECCCCCC
T ss_conf 536801852883858066