HHsearch alignment for GI: 254780535 and conserved domain: TIGR01777
>TIGR01777 yfcH conserved hypothetical protein TIGR01777; InterPro: IPR010099 This entry represents proteins of unknown function including the Escherichia coli YfcH protein..
Probab=97.96 E-value=5.6e-05 Score=52.13 Aligned_cols=209 Identities=20% Similarity=0.198 Sum_probs=121.4
Q ss_pred EEEECC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCC-CEEEEECCCCCHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 999389-9857899999999889979999789899999999721389-48999888999999999999999997699899
Q gi|254780535|r 9 ALVTGA-SGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVD-RFLLFPANFSDRVSVEYLSKRVNEEMGGVDIL 86 (247)
Q Consensus 9 ~lITG~-~~GIG~~ia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~g-~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iDil 86 (247)
T Consensus 1 ~litGgnTGfiG~~L~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----W-----~~l~~~Dav 71 (307)
T TIGR01777 1 ILITGGNTGFIGRALTQRLTKSGHEVTILTRSPQAESNTKKVGYKNWLAEGKLGIVIAESG----W-----SALEGADAV 71 (307)
T ss_pred CEECCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHCCCCCCCCCCCCCCCCCCHHC----C-----CCCCCCCEE
T ss_conf 9641533023789999999847998999961686432000255445555221245207220----5-----667886279
Q ss_pred EECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCEEEEECCHHHCCCCCCCHHHHHHH-HH
Q ss_conf 967898998875443999999999998899999999999999862-----998499947623388999857789889-99
Q gi|254780535|r 87 VNNAGIVRDSLFMRARYEDWDDVLSVNLTSAFLLTRQLVPLMIRN-----RFGRVINITSVVGFTGNAGQVNYCAAK-SG 160 (247)
Q Consensus 87 VnnAg~~~~~~~~~~~~~~w~~~~~~Nl~~~~~~~~~~~~~m~~~-----~~G~IInisS~~~~~~~~~~~~Y~~sK-~a 160 (247)
T Consensus 72 iNLAG~~i~~P-~RWt~~~K~~i~~SR----i~~T~~L~~~i~~~~r~~~~P~~~isaS-AvGyYG~~~~~~~tE~~~~~ 145 (307)
T TIGR01777 72 INLAGEPIADP-KRWTEERKQEIRDSR----IDTTRALVEAIAAAPRAEQKPKVFISAS-AVGYYGHSEDRVFTEEDASG 145 (307)
T ss_pred EECCCCCCCCC-CCCCHHHHHHHHHCC----HHHHHHHHHHHHHCCCCCCCCCEEEEEE-EEEEECCCCCCEEECCCCCC
T ss_conf 85568885778-887877757565233----4789999999984656678871688501-66630689982151166788
Q ss_pred -HHHHHHHHHHHHH-------HHCCEEEEECCCCCCCH---HHHCCCHHHHHHHHHCCCCC--C----CCCHHHHHHHHH
Q ss_conf -9999999999963-------22859963433881793---44228989999998539798--8----857999999999
Q gi|254780535|r 161 -LTGFTKALAQETG-------RRNVTVNCVAPGFIGSD---MTVNLTEDQKGKIISSIPMK--R----MGAVDDIAAAVL 223 (247)
Q Consensus 161 -i~~ltk~lA~e~~-------~~gIrvN~IaPG~i~T~---~~~~~~~~~~~~~~~~~pl~--R----~~~pedia~~v~ 223 (247)
T Consensus 146 ~~ddFla~lc~~WE~~A~~a~~~g~Rvv~~R~G~VLg~~GGaL~~m~~pf~~--glGGplG~G~Q~~SWIH~~D~v~~I~ 223 (307)
T TIGR01777 146 PGDDFLAELCRDWEEAAQAAEQLGTRVVLLRTGIVLGPKGGALAKMLPPFRL--GLGGPLGSGRQWFSWIHIEDLVQLIL 223 (307)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCHHHHHHHHHH--HCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 8777218999999998510533687389876413470898703454566765--15742368841450535889999999
Q ss_pred HHHCHHHCCCCCC
Q ss_conf 9738887877886
Q gi|254780535|r 224 YLSSLEASYVTGQ 236 (247)
Q Consensus 224 fL~S~~~~~itG~ 236 (247)
T Consensus 224 ~~l--~~~~~~Gp 234 (307)
T TIGR01777 224 FAL--ENASVSGP 234 (307)
T ss_pred HHH--HCCCCCCC
T ss_conf 998--55899632