HHsearch alignment for GI: 254780535 and conserved domain: TIGR01832
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase; InterPro: IPR011286 This entry describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (IPR002198 from INTERPRO). This protein has been characterised in Erwinia chrysanthemi as an enzyme of pectin degradation .; GO: 0008678 2-deoxy-D-gluconate 3-dehydrogenase activity, 0051287 NAD binding.
Probab=100.00 E-value=0 Score=435.16 Aligned_cols=242 Identities=38% Similarity=0.618 Sum_probs=228.0
Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEE-CCHHHHHHHHHHHHCCC-CEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 678877899938998578999999998899799997-89899999999721389-4899988899999999999999999
Q gi|254780535|r 2 FDLTGKKALVTGASGSIGLAIAKILYKQGASVGLHG-TSQEKLEKVAKNFDDVD-RFLLFPANFSDRVSVEYLSKRVNEE 79 (247)
Q Consensus 2 ~~l~~K~~lITG~~~GIG~~ia~~la~~Ga~V~i~~-r~~~~l~~~~~~~~~~g-~~~~~~~Dv~~~~~~~~~~~~~~~~ 79 (247)
T Consensus 1 FsL~GK~alvTGa~tGlGQG~a~gLA~AGadi~g~~~~~~--~~ET~~~v~~~Gr~f~~~~~Dl~~~~~~~~~~~~~~~~ 78 (249)
T TIGR01832 1 FSLEGKVALVTGANTGLGQGIAVGLAEAGADIVGVGHISE--PSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEE 78 (249)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCC--HHHHHHHHHHHCCCEEHHHHHHHCHHHHHHHHHHHHHH
T ss_conf 9878776888259887368999999857741785143126--38889999982521000212122321378999999986
Q ss_pred HCCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEECCHHHCCCCCCCHHHHHHH
Q ss_conf 76998999678989988754439999999999988999999999999998629-98499947623388999857789889
Q gi|254780535|r 80 MGGVDILVNNAGIVRDSLFMRARYEDWDDVLSVNLTSAFLLTRQLVPLMIRNR-FGRVINITSVVGFTGNAGQVNYCAAK 158 (247)
Q Consensus 80 ~g~iDilVnnAg~~~~~~~~~~~~~~w~~~~~~Nl~~~~~~~~~~~~~m~~~~-~G~IInisS~~~~~~~~~~~~Y~~sK 158 (247)
T Consensus 79 ~g~~DiLVNNAGIIrR~da~~f~e~dWd~V~nvNlk~vF~l~q~~a~~~l~~G~~GkiiNIAS~LSFQGGirVPsYTASK 158 (249)
T TIGR01832 79 FGKIDILVNNAGIIRREDAVEFSEKDWDDVMNVNLKSVFFLTQAAAKQFLKQGRGGKIINIASLLSFQGGIRVPSYTASK 158 (249)
T ss_pred HCCCCEEEECCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHCCCCCCHHHHHHH
T ss_conf 18865676074221045775156144579998668999999999999999648995057514234422675512466667
Q ss_pred HHHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHCC--CHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCHHHCCCCCC
Q ss_conf 9999999999999632285996343388179344228--98999999853979888579999999999738887877886
Q gi|254780535|r 159 SGLTGFTKALAQETGRRNVTVNCVAPGFIGSDMTVNL--TEDQKGKIISSIPMKRMGAVDDIAAAVLYLSSLEASYVTGQ 236 (247)
Q Consensus 159 ~ai~~ltk~lA~e~~~~gIrvN~IaPG~i~T~~~~~~--~~~~~~~~~~~~pl~R~~~pedia~~v~fL~S~~~~~itG~ 236 (247)
T Consensus 159 ~~v~GlTk~lAnEWa~~ginVNAIAPGY~~T~NT~~lRaD~~Rn~~Il~RIPaGrWG~p~D~~G~aVFLaS~ASdYv~G~ 238 (249)
T TIGR01832 159 HGVAGLTKLLANEWAAKGINVNAIAPGYMETNNTQALRADEDRNAAILERIPAGRWGTPEDLGGAAVFLASSASDYVNGA 238 (249)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCE
T ss_conf 77777899999899873881531158876645515420317778999731789998484000306888877554343650
Q ss_pred EEEECCCEE
Q ss_conf 899689504
Q gi|254780535|r 237 TIHVNGGMA 245 (247)
Q Consensus 237 ~i~vDGG~~ 245 (247)
T Consensus 239 ~l~VDGGWL 247 (249)
T TIGR01832 239 ILAVDGGWL 247 (249)
T ss_pred EEEECCCCC
T ss_conf 662077313