HHsearch alignment for GI: 254780535 and conserved domain: TIGR01963
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase; InterPro: IPR011294 This entry represents a subfamily of the short chain dehydrogenases. Characterised members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polymers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.; GO: 0003858 3-hydroxybutyrate dehydrogenase activity.
Probab=100.00 E-value=0 Score=506.06 Aligned_cols=241 Identities=38% Similarity=0.574 Sum_probs=230.6
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC--HHHHHHHHHHHHCCC-CEEEEECCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 7789993899857899999999889979999789--899999999721389-4899988899999999999999999769
Q gi|254780535|r 6 GKKALVTGASGSIGLAIAKILYKQGASVGLHGTS--QEKLEKVAKNFDDVD-RFLLFPANFSDRVSVEYLSKRVNEEMGG 82 (247)
Q Consensus 6 ~K~~lITG~~~GIG~~ia~~la~~Ga~V~i~~r~--~~~l~~~~~~~~~~g-~~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 82 (247)
T Consensus 1 ~ktalVTGaaSGIG~~iA~~LA~aGa~v~~~d~~~~~~~~~~~~~~~~~~G~~v~~~~~D~T~~~e~~~~~~~~~~~fG~ 80 (258)
T TIGR01963 1 GKTALVTGAASGIGLAIAKALAAAGANVVVNDLGEADEGAEAAAKVATDAGGSVIYLVADVTKEEEIADMIQAVAAEFGG 80 (258)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCC
T ss_conf 94899965871678999999987298899846788789999999999961883577514788889999999999998568
Q ss_pred CCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-EEEEECCHHHCCCCCCCHHHHHHHHHH
Q ss_conf 9899967898998875443999999999998899999999999999862998-499947623388999857789889999
Q gi|254780535|r 83 VDILVNNAGIVRDSLFMRARYEDWDDVLSVNLTSAFLLTRQLVPLMIRNRFG-RVINITSVVGFTGNAGQVNYCAAKSGL 161 (247)
Q Consensus 83 iDilVnnAg~~~~~~~~~~~~~~w~~~~~~Nl~~~~~~~~~~~~~m~~~~~G-~IInisS~~~~~~~~~~~~Y~~sK~ai 161 (247)
T Consensus 81 ~DiLVNNAG~QhVaPiEeFP~~~w~~iiav~LtsaF~t~raAlP~Mk~~gwGGRIiNIAS~HGLvASp~KSAYVAAKHG~ 160 (258)
T TIGR01963 81 LDILVNNAGIQHVAPIEEFPPEKWDRIIAVMLTSAFHTIRAALPHMKKQGWGGRIINIASVHGLVASPFKSAYVAAKHGL 160 (258)
T ss_pred CCEEEECCCEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 87488446401417654778667873730216888999975064321378553799710100000353213456774302
Q ss_pred HHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHCCCHHH------------HHHHHHCCCCCCCCCHHHHHHHHHHHHCHH
Q ss_conf 99999999996322859963433881793442289899------------999985397988857999999999973888
Q gi|254780535|r 162 TGFTKALAQETGRRNVTVNCVAPGFIGSDMTVNLTEDQ------------KGKIISSIPMKRMGAVDDIAAAVLYLSSLE 229 (247)
Q Consensus 162 ~~ltk~lA~e~~~~gIrvN~IaPG~i~T~~~~~~~~~~------------~~~~~~~~pl~R~~~pedia~~v~fL~S~~ 229 (247)
T Consensus 161 ~GLTKv~ALE~A~~giT~NaiCPGYV~TPLV~~Qi~DqAk~rGi~eE~V~~~VmL~~~P~k~F~~~~e~A~~a~fLaS~~ 240 (258)
T TIGR01963 161 IGLTKVLALEVAAHGITANAICPGYVRTPLVEKQIADQAKTRGIPEEQVIREVMLKKQPTKRFVTVDEVAETALFLASDA 240 (258)
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCHH
T ss_conf 12115555420478875866728756755467658999865188998888986078889841137999999999841734
Q ss_pred HCCCCCCEEEECCCEEC
Q ss_conf 78778868996895041
Q gi|254780535|r 230 ASYVTGQTIHVNGGMAM 246 (247)
Q Consensus 230 ~~~itG~~i~vDGG~~~ 246 (247)
T Consensus 241 A~~~TG~~~~~DGGWtA 257 (258)
T TIGR01963 241 AAGITGQAIVLDGGWTA 257 (258)
T ss_pred HHCCCCEEEEECCCEEC
T ss_conf 42366207886484332