HHsearch alignment for GI: 254780535 and conserved domain: TIGR03325
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=100.00 E-value=0 Score=458.69 Aligned_cols=241 Identities=27% Similarity=0.408 Sum_probs=213.2
Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHC
Q ss_conf 67887789993899857899999999889979999789899999999721389489998889999999999999999976
Q gi|254780535|r 2 FDLTGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFPANFSDRVSVEYLSKRVNEEMG 81 (247)
Q Consensus 2 ~~l~~K~~lITG~~~GIG~~ia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~g~~~~~~~Dv~~~~~~~~~~~~~~~~~g 81 (247)
T Consensus 1 M~L~gKvalITGgs~GIG~aia~~~a~~Ga~V~i~~r~~~~l~~~~~~~--g~~~~~~~~Dv~~~~~~~~~v~~~~~~~G 78 (262)
T TIGR03325 1 MRLKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAAH--GDAVVGVEGDVRSLDDHKEAVARCVAAFG 78 (262)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHC--CCCEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 9989988999067878999999999987999999989989999999867--99679998457999999999999999849
Q ss_pred CCCEEEECCCCC-CCCCHHHCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCHHHHH
Q ss_conf 998999678989-988754439----999999999988999999999999998629984999476233889998577898
Q gi|254780535|r 82 GVDILVNNAGIV-RDSLFMRAR----YEDWDDVLSVNLTSAFLLTRQLVPLMIRNRFGRVINITSVVGFTGNAGQVNYCA 156 (247)
Q Consensus 82 ~iDilVnnAg~~-~~~~~~~~~----~~~w~~~~~~Nl~~~~~~~~~~~~~m~~~~~G~IInisS~~~~~~~~~~~~Y~~ 156 (247)
T Consensus 79 ~iDiLVnNAG~~~~~~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~-g~iI~~~S~~~~~~~~~~~~Y~a 157 (262)
T TIGR03325 79 KIDCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASR-GSVIFTISNAGFYPNGGGPLYTA 157 (262)
T ss_pred CCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCCHHHHH
T ss_conf 98889972651687764345862414999999999974999999999999999709-81899987103248899668999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHCCC---------HH-HHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 8999999999999996322859963433881793442289---------89-9999985397988857999999999973
Q gi|254780535|r 157 AKSGLTGFTKALAQETGRRNVTVNCVAPGFIGSDMTVNLT---------ED-QKGKIISSIPMKRMGAVDDIAAAVLYLS 226 (247)
Q Consensus 157 sK~ai~~ltk~lA~e~~~~gIrvN~IaPG~i~T~~~~~~~---------~~-~~~~~~~~~pl~R~~~pedia~~v~fL~ 226 (247)
T Consensus 158 sKaal~~ltr~lA~e~~~~-IRVNaV~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlgR~g~peeia~av~fL~ 236 (262)
T TIGR03325 158 AKHAVVGLVKELAFELAPY-VRVNGVAPGGMSSDLRGPKSLGMADKSISTVPLGDMLKSVLPIGRMPDAEEYTGAYVFFA 236 (262)
T ss_pred HHHHHHHHHHHHHHHHCCC-CEEEEEEECCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 9999999999999997599-789999537888798675443135554211058999970799899839999999999981
Q ss_pred CH-HHCCCCCCEEEECCCEEC
Q ss_conf 88-878778868996895041
Q gi|254780535|r 227 SL-EASYVTGQTIHVNGGMAM 246 (247)
Q Consensus 227 S~-~~~~itG~~i~vDGG~~~ 246 (247)
T Consensus 237 s~~~s~~iTG~~l~VDGG~~~ 257 (262)
T TIGR03325 237 TRGDTVPATGAVLNYDGGMGV 257 (262)
T ss_pred CCCHHCCEECCEEEECCCCCC
T ss_conf 980226945868897947106