HHsearch alignment for GI: 254780535 and conserved domain: TIGR03589
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=99.69 E-value=3.5e-14 Score=111.31 Aligned_cols=215 Identities=16% Similarity=0.164 Sum_probs=158.8
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHC
Q ss_conf 88778999389985789999999988--9979999789899999999721389489998889999999999999999976
Q gi|254780535|r 4 LTGKKALVTGASGSIGLAIAKILYKQ--GASVGLHGTSQEKLEKVAKNFDDVDRFLLFPANFSDRVSVEYLSKRVNEEMG 81 (247)
Q Consensus 4 l~~K~~lITG~~~GIG~~ia~~la~~--Ga~V~i~~r~~~~l~~~~~~~~~~g~~~~~~~Dv~~~~~~~~~~~~~~~~~g 81 (247)
T Consensus 2 ~~~K~ILVTGGaGfIGS~lv~~Ll~~~~~~~iii~~~de~~~~~l~~~~~-~~~i~f~~gDIrD~~~l~~~~~------- 73 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFP-APCLRFFIGDVRDKERLTRALR------- 73 (324)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCC-CCCEEEEECCCCCHHHHHHHHC-------
T ss_conf 99399999079779999999999972998289996686403288985168-9875999677778899997634-------
Q ss_pred CCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCHHHHHHHHHH
Q ss_conf 99899967898998875443999999999998899999999999999862998499947623388999857789889999
Q gi|254780535|r 82 GVDILVNNAGIVRDSLFMRARYEDWDDVLSVNLTSAFLLTRQLVPLMIRNRFGRVINITSVVGFTGNAGQVNYCAAKSGL 161 (247)
Q Consensus 82 ~iDilVnnAg~~~~~~~~~~~~~~w~~~~~~Nl~~~~~~~~~~~~~m~~~~~G~IInisS~~~~~~~~~~~~Y~~sK~ai 161 (247)
T Consensus 74 ~vD~VfHaAA~khVp~----se~nP~e~i~tNV~Gt~nlleaa~~----~~Vkk~V~iSTDka~~P---~n~yGasK~~~ 142 (324)
T TIGR03589 74 GVDYVVHAAALKQVPA----AEYNPFECIRTNINGAQNVIDAAID----NGVKRVVALSTDKAANP---INLYGATKLAS 142 (324)
T ss_pred CCCEEEECCCCCCCCH----HHHCHHHHHHHHHHHHHHHHHHHHH----CCCCEEEEECCCCCCCC---CCCCCCCHHHH
T ss_conf 8889999462776726----7769899999997999999999885----55431786226888899---67431236767
Q ss_pred HHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHCCCHHHHHHHHHC---CCCC------CCCCHHHHHHHHHHHHCHHHCC
Q ss_conf 999999999963228599634338817934422898999999853---9798------8857999999999973888787
Q gi|254780535|r 162 TGFTKALAQETGRRNVTVNCVAPGFIGSDMTVNLTEDQKGKIISS---IPMK------RMGAVDDIAAAVLYLSSLEASY 232 (247)
Q Consensus 162 ~~ltk~lA~e~~~~gIrvN~IaPG~i~T~~~~~~~~~~~~~~~~~---~pl~------R~~~pedia~~v~fL~S~~~~~ 232 (247)
T Consensus 143 E~l~~~~~~~~~~~~~~~~~vRygNV~gsrg-SViP~F~~qi~~g~~~~~itd~~mtRf~mtv~dav~lV~~a~~---~~ 218 (324)
T TIGR03589 143 DKLFVAANNISGSKGTRFSVVRYGNVVGSRG-SVVPFFKSLKEEGVTELPITDPRMTRFWITLEQGVNFVLKSLE---RM 218 (324)
T ss_pred HHHHHHHHHHHCCCCCEEEEEEECCCCCCCC-CCHHHHHHHHHCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHH---HC
T ss_conf 9999999985078886378863327518886-6399999999839997444999807998889999999999998---28
Q ss_pred CCCCEEEEC
Q ss_conf 788689968
Q gi|254780535|r 233 VTGQTIHVN 241 (247)
Q Consensus 233 itG~~i~vD 241 (247)
T Consensus 219 ~~GEifv~k 227 (324)
T TIGR03589 219 LGGEIFVPK 227 (324)
T ss_pred CCCEEEECC
T ss_conf 898499836