RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780535|ref|YP_003064948.1|
3-ketoacyl-(acyl-carrier-protein) reductase [Candidatus Liberibacter
asiaticus str. psy62]
(247 letters)
>gnl|CDD|36414 KOG1200, KOG1200, KOG1200, Mitochondrial/plastidial
beta-ketoacyl-ACP reductase [Lipid transport and
metabolism].
Length = 256
Score = 207 bits (527), Expect = 3e-54
Identities = 99/245 (40%), Positives = 142/245 (57%), Gaps = 2/245 (0%)
Query: 4 LTGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFPANF 63
L K A VTG S IG AIA++L K+GA V + E A + F +
Sbjct: 12 LMSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGGYGDHSAFSCDV 71
Query: 64 SDRVSVEYLSKRVNEEMGGVDILVNNAGIVRDSLFMRARYEDWDDVLSVNLTSAFLLTRQ 123
S V+ + + + +G +LVN AGI RD L +R + E WD V++VNLT FL+T+
Sbjct: 72 SKAHDVQNTLEEMEKSLGTPSVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQA 131
Query: 124 LV--PLMIRNRFGRVINITSVVGFTGNAGQVNYCAAKSGLTGFTKALAQETGRRNVTVNC 181
V +M + + +IN++S+VG GN GQ NY A+K G+ GFTK A+E R+N+ VN
Sbjct: 132 AVRAMVMNQQQGLSIINVSSIVGKIGNFGQTNYAASKGGVIGFTKTAARELARKNIRVNV 191
Query: 182 VAPGFIGSDMTVNLTEDQKGKIISSIPMKRMGAVDDIAAAVLYLSSLEASYVTGQTIHVN 241
V PGFI + MT + KI+ IPM R+G +++A VL+L+S +SY+TG T+ V
Sbjct: 192 VLPGFIATPMTEAMPPKVLDKILGMIPMGRLGEAEEVANLVLFLASDASSYITGTTLEVT 251
Query: 242 GGMAM 246
GG+AM
Sbjct: 252 GGLAM 256
>gnl|CDD|31231 COG1028, FabG, Dehydrogenases with different specificities (related
to short-chain alcohol dehydrogenases) [Secondary
metabolites biosynthesis, transport, and catabolism /
General function prediction only].
Length = 251
Score = 190 bits (482), Expect = 5e-49
Identities = 112/254 (44%), Positives = 148/254 (58%), Gaps = 13/254 (5%)
Query: 2 FDLTGKKALVTGASGSIGLAIAKILYKQGASVGLHG--TSQEKLEKVAKNFDD--VDRFL 57
DL+GK ALVTGAS IG AIA+ L ++GA V + + +E E +A + R
Sbjct: 1 MDLSGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIKEAGGGRAA 60
Query: 58 LFPANFSDRV-SVEYLSKRVNEEMGGVDILVNNAGIVR-DSLFMRARYEDWDDVLSVNLT 115
A+ SD SVE L EE G +DILVNNAGI D+ EDWD V+ VNL
Sbjct: 61 AVAADVSDDEESVEALVAAAEEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLL 120
Query: 116 SAFLLTRQLVPLMIRNRFGRVINITSVVGFTGNAGQVNYCAAKSGLTGFTKALAQETGRR 175
AFLLTR +PLM + R++NI+SV G G GQ Y A+K+ L G TKALA E R
Sbjct: 121 GAFLLTRAALPLMKK---QRIVNISSVAGLGGPPGQAAYAASKAALIGLTKALALELAPR 177
Query: 176 NVTVNCVAPGFIGSDMTVNLTED---QKGKIISSIPMKRMGAVDDIAAAVLYL-SSLEAS 231
+ VN VAPG+I + MT L ++ + IP+ R+G +++AAAV +L S AS
Sbjct: 178 GIRVNAVAPGYIDTPMTAALESAELEALKRLAARIPLGRLGTPEEVAAAVAFLASDEAAS 237
Query: 232 YVTGQTIHVNGGMA 245
Y+TGQT+ V+GG+
Sbjct: 238 YITGQTLPVDGGLL 251
>gnl|CDD|35944 KOG0725, KOG0725, KOG0725, Reductases with broad range of substrate
specificities [General function prediction only].
Length = 270
Score = 159 bits (404), Expect = 5e-40
Identities = 89/259 (34%), Positives = 140/259 (54%), Gaps = 15/259 (5%)
Query: 1 MFDLTGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAK----NFDDVDRF 56
L GK ALVTG S IG AIA +L K GA V + G S+E+LE+ A+ +
Sbjct: 3 GGRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKV 62
Query: 57 LLFPANFSDRVSVEYL-SKRVNEEMGGVDILVNNAGIVR-DSLFMRARYEDWDDVLSVNL 114
L + S V VE L V + G +DILVNNAG + + E +D +++ NL
Sbjct: 63 LAIVCDVSKEVDVEKLVEFAVEKFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNL 122
Query: 115 T-SAFLLTRQLVPLMIRNRFGRVINITSVVGFTGNAGQ-VNYCAAKSGLTGFTKALAQET 172
SAF L + P++ +++ G ++NI+SV G G V Y +K+ L T++LA+E
Sbjct: 123 RGSAFCLKQAARPMLKKSKGGSIVNISSVAGVGPGPGSGVAYGVSKAALLQLTRSLAKEL 182
Query: 173 GRRNVTVNCVAPGFIGSDMTVNLTEDQKGKII-------SSIPMKRMGAVDDIAAAVLYL 225
+ + VN V+PG + + + +D + + ++P+ R+G +++A A +L
Sbjct: 183 AKHGIRVNSVSPGLVKTSLRAAGLDDGEMEEFKEATDSKGAVPLGRVGTPEEVAEAAAFL 242
Query: 226 SSLEASYVTGQTIHVNGGM 244
+S +ASY+TGQTI V+GG
Sbjct: 243 ASDDASYITGQTIIVDGGF 261
>gnl|CDD|30648 COG0300, DltE, Short-chain dehydrogenases of various substrate
specificities [General function prediction only].
Length = 265
Score = 150 bits (379), Expect = 4e-37
Identities = 65/226 (28%), Positives = 113/226 (50%), Gaps = 6/226 (2%)
Query: 1 MFDLTGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDV--DRFLL 58
+ GK AL+TGAS IG +AK L ++G ++ L ++KLE +AK +D +
Sbjct: 1 PGPMKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEV 60
Query: 59 FPANFSDRVSVEYLSKRVNEEMGGVDILVNNAGIVRDSLFMRARYEDWDDVLSVNLTSAF 118
PA+ SD ++E L + E G +D+LVNNAG F+ ++ ++++ +N+ +
Sbjct: 61 IPADLSDPEALERLEDELKERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALT 120
Query: 119 LLTRQLVPLMIRNRFGRVINITSVVGFTGNAGQVNYCAAKSGLTGFTKALAQETGRRNVT 178
LT+ ++P M+ G +INI S G Y A K+ + F++AL +E V
Sbjct: 121 RLTKAVLPGMVERGAGHIINIGSAAGLIPTPYMAVYSATKAFVLSFSEALREELKGTGVK 180
Query: 179 VNCVAPGFIGSDMTVNLTEDQKGKIISSIPMKRMGAVDDIAAAVLY 224
V V PG ++ + + + P + + + +D+A A L
Sbjct: 181 VTAVCPGPTRTEF----FDAKGSDVYLLSPGELVLSPEDVAEAALK 222
>gnl|CDD|33946 COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown
specificity [General function prediction only].
Length = 246
Score = 139 bits (352), Expect = 6e-34
Identities = 72/233 (30%), Positives = 113/233 (48%), Gaps = 4/233 (1%)
Query: 1 MFDLTGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFP 60
M L GK AL+TGAS IG A A+ L + GA V L +E+LE +A L
Sbjct: 1 MTTLKGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGA-GAALALA 59
Query: 61 ANFSDRVSVEYLSKRVNEEMGGVDILVNNAGIVRDSLFMRARYEDWDDVLSVNLTSAFLL 120
+ +DR +VE + + EE G +DILVNNAG+ A +DWD ++ N+
Sbjct: 60 LDVTDRAAVEAAIEALPEEFGRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNG 119
Query: 121 TRQLVPLMIRNRFGRVINITSVVGFTGNAGQVNYCAAKSGLTGFTKALAQETGRRNVTVN 180
TR ++P M+ + G +IN+ S+ G G Y A K+ + F+ L QE + V
Sbjct: 120 TRAVLPGMVERKSGHIINLGSIAGRYPYPGGAVYGATKAAVRAFSLGLRQELAGTGIRVT 179
Query: 181 CVAPGFIGSDMTVNLTEDQKGKIISSIPMKRMGAV--DDIAAAVLYLSSLEAS 231
++PG + + + + + + K A+ +DIA AVL+ ++
Sbjct: 180 VISPGLVETTEFSTVRFEGDDERADKV-YKGGTALTPEDIAEAVLFAATQPQH 231
>gnl|CDD|36419 KOG1205, KOG1205, KOG1205, Predicted dehydrogenase [Secondary
metabolites biosynthesis, transport and catabolism].
Length = 282
Score = 135 bits (340), Expect = 1e-32
Identities = 71/230 (30%), Positives = 107/230 (46%), Gaps = 5/230 (2%)
Query: 1 MFDLTGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDV---DRFL 57
M L GK L+TGAS IG A+A L K+GA + L +LE+VA+ + ++ L
Sbjct: 7 MERLAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVL 66
Query: 58 LFPANFSDRVSVEYLSKRVNEEMGGVDILVNNAGIVRDSLFMRARYEDWDDVLSVNLTSA 117
+ + SD SV+ + G VD+LVNNAGI ED +V+ N+
Sbjct: 67 VLQLDVSDEESVKKFVEWAIRHFGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGT 126
Query: 118 FLLTRQLVPLMIRNRFGRVINITSVVGFTGNAGQVNYCAAKSGLTGFTKALAQETGR-RN 176
LT+ +P M + G ++ I+S+ G + Y A+K L GF + L QE
Sbjct: 127 VYLTKAALPSMKKRNDGHIVVISSIAGKMPLPFRSIYSASKHALEGFFETLRQELIPLGT 186
Query: 177 VTVNCVAPGFIGSDMTVNLTEDQKGKIISSIPMKRMGAVDDIAAAVLYLS 226
+ + V+PG I ++ T ++GK P R V D A +S
Sbjct: 187 IIIILVSPGPIETEFTGKELLGEEGKSQQG-PFLRTEDVADPEAVAYAIS 235
>gnl|CDD|36415 KOG1201, KOG1201, KOG1201, Hydroxysteroid 17-beta dehydrogenase 11
[Secondary metabolites biosynthesis, transport and
catabolism].
Length = 300
Score = 125 bits (315), Expect = 1e-29
Identities = 62/192 (32%), Positives = 97/192 (50%), Gaps = 3/192 (1%)
Query: 3 DLTGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFPAN 62
++G+ L+TG +G IA K+GA + L +++ E+ K + + +
Sbjct: 35 SVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCD 94
Query: 63 FSDRVSVEYLSKRVNEEMGGVDILVNNAGIVRDSLFMRARYEDWDDVLSVNLTSAFLLTR 122
SDR + L+K+V +E+G VDILVNNAGIV + E+ VN + F T+
Sbjct: 95 ISDREEIYRLAKKVKKEVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTK 154
Query: 123 QLVPLMIRNRFGRVINITSVVGFTGNAGQVNYCAAKSGLTGFTKALAQET---GRRNVTV 179
+P M+ N G ++ I SV G G AG +YCA+K GF ++L+ E G+ +
Sbjct: 155 AFLPKMLENNNGHIVTIASVAGLFGPAGLADYCASKFAAVGFHESLSMELRALGKDGIKT 214
Query: 180 NCVAPGFIGSDM 191
V P FI + M
Sbjct: 215 TLVCPYFINTGM 226
>gnl|CDD|143883 pfam00106, adh_short, short chain dehydrogenase. This family
contains a wide variety of dehydrogenases.
Length = 167
Score = 118 bits (299), Expect = 1e-27
Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 8/169 (4%)
Query: 7 KKALVTGASGSIGLAIAKILYKQGAS----VGLHGTSQEKLEKVAKNFDDVDRFLLFPAN 62
L+TG +G +GLA+A+ L +GA V G + E VA+ + +
Sbjct: 1 GTVLITGGTGGLGLALARWLAAEGARHLVLVSRRGDAPGAAELVAELEALGAEVTVAACD 60
Query: 63 FSDRVSVEYLSKRVNEEMGGVDILVNNAGIVRDSLFMRARYEDWDDVLSVNLTSAFLLTR 122
+DR ++ L + +G +D +V+NAG++ D E ++ VL+ +T A+ L
Sbjct: 61 VADRDALAALLAALPAALGPLDGVVHNAGVLDDGPLEELTPERFERVLAPKVTGAWNLHE 120
Query: 123 QLVPLMIRNRFGRVINITSVVGFTGNAGQVNYCAAKSGLTGFTKALAQE 171
+ L G + +SV G G+ GQ NY AA + L + E
Sbjct: 121 LTLDL----DLGAFVLFSSVAGVLGSPGQANYAAANAALDALAEHRRAE 165
>gnl|CDD|36421 KOG1207, KOG1207, KOG1207, Diacetyl reductase/L-xylulose reductase
[Secondary metabolites biosynthesis, transport and
catabolism].
Length = 245
Score = 114 bits (286), Expect = 3e-26
Identities = 78/245 (31%), Positives = 115/245 (46%), Gaps = 11/245 (4%)
Query: 3 DLTGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFPAN 62
L G LVTGA IG I L K GA V ++ L + K L+ P
Sbjct: 4 SLAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEANLLSLVKE----TPSLIIPIV 59
Query: 63 FSDRVSVEYLSKRVNEEMGGVDILVNNAGIVRDSLFMRARYEDWDDVLSVNLTSAFLLTR 122
+S ++ + +D LVNNAG+ + F + +D +VN+ + L+
Sbjct: 60 GD--LSAWEALFKLLVPVFPIDGLVNNAGVATNHPFGEITQQSFDRTFAVNVRAVILVA- 116
Query: 123 QLVP--LMIRNRFGRVINITSVVGFTGNAGQVNYCAAKSGLTGFTKALAQETGRRNVTVN 180
QLV L+ R G ++N++S YCA K+ L TK LA E G + + VN
Sbjct: 117 QLVARNLVDRQIKGAIVNVSSQASIRPLDNHTVYCATKAALDMLTKCLALELGPQKIRVN 176
Query: 181 CVAPGFIGSDMTVNLTED--QKGKIISSIPMKRMGAVDDIAAAVLYLSSLEASYVTGQTI 238
V P + +DM + D +K K++ IP+KR VD++ AVL+L S +S TG T+
Sbjct: 177 SVNPTVVMTDMGRDNWSDPDKKKKMLDRIPLKRFAEVDEVVNAVLFLLSDNSSMTTGSTL 236
Query: 239 HVNGG 243
V GG
Sbjct: 237 PVEGG 241
>gnl|CDD|39371 KOG4169, KOG4169, KOG4169, 15-hydroxyprostaglandin dehydrogenase
and related dehydrogenases [Lipid transport and
metabolism, General function prediction only].
Length = 261
Score = 109 bits (275), Expect = 6e-25
Identities = 67/204 (32%), Positives = 107/204 (52%), Gaps = 17/204 (8%)
Query: 2 FDLTGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRF---LL 58
DLTGK ALVTG +G IGLA +K L ++G V + S+E E +AK ++ +
Sbjct: 1 MDLTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEENPEAIAK-LQAINPSVSVIF 59
Query: 59 FPANFSDRVSVEYLSKRVNEEMGGVDILVNNAGIVRDSLFMRARYEDWDDVLSVNLTSAF 118
+ ++R +E ++ G +DIL+N AGI+ D +DW+ ++VNLT
Sbjct: 60 IKCDVTNRGDLEAAFDKILATFGTIDILINGAGILDD--------KDWERTINVNLTGVI 111
Query: 119 LLTRQLVPLMIRNRFGR---VINITSVVGFTGNAGQVNYCAAKSGLTGFTKALAQET--G 173
T+ +P M + + G+ ++N++SV G Y A+K+G+ GFT++LA
Sbjct: 112 NGTQLALPYMDKKQGGKGGIIVNMSSVAGLDPMPVFPVYAASKAGVVGFTRSLADLAYYQ 171
Query: 174 RRNVTVNCVAPGFIGSDMTVNLTE 197
R V N V PGF +D+ N+
Sbjct: 172 RSGVRFNAVCPGFTRTDLAENIDA 195
>gnl|CDD|36413 KOG1199, KOG1199, KOG1199, Short-chain alcohol
dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary
metabolites biosynthesis, transport and catabolism].
Length = 260
Score = 107 bits (269), Expect = 2e-24
Identities = 78/254 (30%), Positives = 111/254 (43%), Gaps = 17/254 (6%)
Query: 6 GKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFPANFSD 65
G ALVTG + +G A A+ L KQGASV L Q K VAK F PA+ +
Sbjct: 9 GLVALVTGGASGLGKATAERLAKQGASVALLDLPQSKGADVAKELGGKVVFT--PADVTS 66
Query: 66 RVSVEYLSKRVNEEMGGVDILVNNAGIVRDSLF------MRARYEDWDDVLSVNLTSAFL 119
V + + G +D LVN AGI ED+ V+ VN+ F
Sbjct: 67 EKDVRAALAKAKAKFGRLDALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFN 126
Query: 120 LTRQLVPLMIRN------RFGRVINITSVVGFTGNAGQVNYCAAKSGLTGFTKALAQETG 173
+ R LM N + G +IN SV F G GQ Y A+K + G T +A++
Sbjct: 127 VIRLGAGLMGENEPDQNGQRGVIINTASVAAFDGQTGQAAYSASKGAIVGMTLPIARDLA 186
Query: 174 RRNVTVNCVAPGFIGSDMTVNLTEDQKGKIISSIPM-KRMGAVDDIAAAVLYLSSLEASY 232
+ N +APG + + +L E K + IP R+G + A V + +E Y
Sbjct: 187 GDGIRFNTIAPGLFDTPLLSSLPEKVKSFLAQLIPFPSRLGHPHEYAHLVQAI--IENPY 244
Query: 233 VTGQTIHVNGGMAM 246
+ G+ I +G + M
Sbjct: 245 LNGEVIRFDGALRM 258
>gnl|CDD|36232 KOG1014, KOG1014, KOG1014, 17 beta-hydroxysteroid dehydrogenase
type 3, HSD17B3 [Lipid transport and metabolism].
Length = 312
Score = 105 bits (264), Expect = 1e-23
Identities = 57/193 (29%), Positives = 95/193 (49%), Gaps = 7/193 (3%)
Query: 5 TGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFPANF- 63
G A+VTGA+ IG A A+ L K+G +V L +QEKLE VAK ++ + +
Sbjct: 48 LGSWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKYKVEVRIIAID 107
Query: 64 --SDRVSVEYLSKRVNEEMGGVDILVNNAGIVRDSLFMRARYED--WDDVLSVNLTSAFL 119
E L +++ V ILVNN G+ D +Y + ++++VN+ S L
Sbjct: 108 FTKGDEVYEKLLEKLAG--LDVGILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTL 165
Query: 120 LTRQLVPLMIRNRFGRVINITSVVGFTGNAGQVNYCAAKSGLTGFTKALAQETGRRNVTV 179
LT+ ++P M+ + G ++NI S G Y A+K+ + F++ L +E + + V
Sbjct: 166 LTQLILPGMVERKKGIIVNIGSFAGLIPTPLLSVYSASKAFVDFFSRCLQKEYESKGIFV 225
Query: 180 NCVAPGFIGSDMT 192
V P + + M
Sbjct: 226 QSVIPYLVATKMA 238
>gnl|CDD|36422 KOG1208, KOG1208, KOG1208, Dehydrogenases with different
specificities (related to short-chain alcohol
dehydrogenases) [Secondary metabolites biosynthesis,
transport and catabolism].
Length = 314
Score = 95.4 bits (237), Expect = 1e-20
Identities = 52/203 (25%), Positives = 94/203 (46%), Gaps = 19/203 (9%)
Query: 1 MFDLTGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAK---NFDDVDRFL 57
DL+GK ALVTGA+ IG A+ L +GA V L ++E+ E+ + +
Sbjct: 30 GIDLSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIR 89
Query: 58 LFPANFSDRVSVEYLSKRVNEEMGGVDILVNNAGIVRDSLFMRARYEDWDDVLSVNLTSA 117
+ + S SV ++ ++ G +D+L+NNAG++ + + + + N
Sbjct: 90 VIQLDLSSLKSVRKFAEEFKKKEGPLDVLINNAGVMAPPFSLTK--DGLELTFATNYLGH 147
Query: 118 FLLTRQLVPLMIRNRFGRVINITSVVG-FTGNAGQVN------------YCAAKSGLTGF 164
FLLT L+PL+ R+ R++N++S++G + ++ Y +K
Sbjct: 148 FLLTELLLPLLKRSAPSRIVNVSSILGGGKIDLKDLSGEKAKLYSSDAAYALSKLANVLL 207
Query: 165 TKALAQETGRRNVTVNCVAPGFI 187
LA+ ++ VT V PG +
Sbjct: 208 ANELAKRL-KKGVTTYSVHPGVV 229
>gnl|CDD|36424 KOG1210, KOG1210, KOG1210, Predicted 3-ketosphinganine reductase
[Secondary metabolites biosynthesis, transport and
catabolism].
Length = 331
Score = 91.5 bits (227), Expect = 2e-19
Identities = 47/183 (25%), Positives = 77/183 (42%), Gaps = 4/183 (2%)
Query: 7 KKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDD---VDRFLLFPANF 63
+ L+TG S +GLA+A ++GA V + S +KL + + V+ +
Sbjct: 34 RHILITGGSSGLGLALALECKREGADVTITARSGKKLLEAKAELELLTQVEDVSYKSVDV 93
Query: 64 SDRVSVEYLSKRVNEEMGGVDILVNNAGIVRDSLFMRARYEDWDDVLSVNLTSAFLLTRQ 123
D SV + + + + G +D L AG+ LF E + ++ VN + +
Sbjct: 94 IDYDSVSKVIEELRDLEGPIDNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKA 153
Query: 124 LVPLM-IRNRFGRVINITSVVGFTGNAGQVNYCAAKSGLTGFTKALAQETGRRNVTVNCV 182
M R GR+I ++S + G G Y +K L G +AL QE + V V
Sbjct: 154 AARAMKKREHLGRIILVSSQLAMLGIYGYSAYSPSKFALRGLAEALRQELIKYGVHVTLY 213
Query: 183 APG 185
P
Sbjct: 214 YPP 216
>gnl|CDD|33748 COG3967, DltE, Short-chain dehydrogenase involved in D-alanine
esterification of lipoteichoic acid and wall teichoic
acid (D-alanine transfer protein) [Cell envelope
biogenesis, outer membrane].
Length = 245
Score = 91.1 bits (226), Expect = 2e-19
Identities = 53/183 (28%), Positives = 93/183 (50%), Gaps = 5/183 (2%)
Query: 4 LTGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFPANF 63
TG L+TG + IGLA+AK + G +V + G ++E+L + + +
Sbjct: 3 TTGNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAENPE---IHTEVCDV 59
Query: 64 SDRVSVEYLSKRVNEEMGGVDILVNNAGIVRDSLFMRAR--YEDWDDVLSVNLTSAFLLT 121
+DR S L + + +E +++L+NNAGI R+ A +D + ++ NL + LT
Sbjct: 60 ADRDSRRELVEWLKKEYPNLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLT 119
Query: 122 RQLVPLMIRNRFGRVINITSVVGFTGNAGQVNYCAAKSGLTGFTKALAQETGRRNVTVNC 181
L+P ++R +IN++S + F A YCA K+ + +T AL ++ +V V
Sbjct: 120 ALLLPHLLRQPEATIINVSSGLAFVPMASTPVYCATKAAIHSYTLALREQLKDTSVEVIE 179
Query: 182 VAP 184
+AP
Sbjct: 180 LAP 182
>gnl|CDD|30968 COG0623, FabI, Enoyl-[acyl-carrier-protein].
Length = 259
Score = 89.8 bits (223), Expect = 5e-19
Identities = 63/258 (24%), Positives = 123/258 (47%), Gaps = 24/258 (9%)
Query: 1 MFDLTGKKALVTGASG--SIGLAIAKILYKQGASVGLHGTSQEKLEK-VAKNFDDVDRFL 57
M L GK+ L+ G + SI IAK L +QGA + E+LEK V + +++ L
Sbjct: 1 MGLLEGKRILIMGVANNRSIAWGIAKALAEQGAELAF-TYQGERLEKRVEELAEELGSDL 59
Query: 58 LFPANFSDRVSVEYLSKRVNEEMGGVDILVNNAGIV-RDSL---FMRARYEDWDDVLSVN 113
+ P + ++ S++ L + ++ G +D LV++ ++ L ++ E + + ++
Sbjct: 60 VLPCDVTNDESIDALFATIKKKWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDIS 119
Query: 114 LTSAFLLTRQLVPLMIRNRFGRVINITSVVGFTGNAGQV-NY---CAAKSGLTGFTKALA 169
S L + PLM N G ++ +T + G+ V NY AK+ L + LA
Sbjct: 120 AYSFTALAKAARPLM--NNGGSILTLT----YLGSERVVPNYNVMGVAKAALEASVRYLA 173
Query: 170 QETGRRNVTVNCVAPGFIGSDMTVNLTEDQKGKIISSI----PMKRMGAVDDIAAAVLYL 225
+ G+ + VN ++ G I + + + K++ P++R ++++ +L
Sbjct: 174 ADLGKEGIRVNAISAGPIRTLAASGIGD--FRKMLKENEANAPLRRNVTIEEVGNTAAFL 231
Query: 226 SSLEASYVTGQTIHVNGG 243
S +S +TG+ I+V+ G
Sbjct: 232 LSDLSSGITGEIIYVDSG 249
>gnl|CDD|36823 KOG1610, KOG1610, KOG1610, Corticosteroid 11-beta-dehydrogenase and
related short chain-type dehydrogenases [Secondary
metabolites biosynthesis, transport and catabolism,
General function prediction only].
Length = 322
Score = 86.1 bits (213), Expect = 8e-18
Identities = 60/200 (30%), Positives = 95/200 (47%), Gaps = 19/200 (9%)
Query: 3 DLTGKKALVTGASGSIGLAIAKILYKQGASVG---LHGTSQEKLEKVAKNFDDVDRFLLF 59
L+ K L+TG G +AK L K+G V L E L K+ R
Sbjct: 26 SLSDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEGAESLRGETKS----PRLRTL 81
Query: 60 PANFSDRVSVEYLSKRVNEEMG--GVDILVNNAGIVR-----DSLFMRARYEDWDDVLSV 112
+ + SV+ ++ V + +G G+ LVNNAGI + L + ED+ VL+V
Sbjct: 82 QLDVTKPESVKEAAQWVKKHLGEDGLWGLVNNAGISGFLGPDEWLTV----EDYRKVLNV 137
Query: 113 NLTSAFLLTRQLVPLMIRNRFGRVINITSVVGFTGNAGQVNYCAAKSGLTGFTKALAQET 172
NL +T+ +PL+ R R GRV+N++SV+G YC +K + F+ +L +E
Sbjct: 138 NLLGTIRVTKAFLPLLRRAR-GRVVNVSSVLGRVALPALGPYCVSKFAVEAFSDSLRREL 196
Query: 173 GRRNVTVNCVAPGFIGSDMT 192
V V+ + PGF +++
Sbjct: 197 RPFGVKVSIIEPGFFKTNLA 216
>gnl|CDD|36418 KOG1204, KOG1204, KOG1204, Predicted dehydrogenase [Secondary
metabolites biosynthesis, transport and catabolism].
Length = 253
Score = 66.5 bits (162), Expect = 6e-12
Identities = 45/202 (22%), Positives = 84/202 (41%), Gaps = 5/202 (2%)
Query: 1 MFDLTGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFP 60
M K L+TGAS IG + + +G ++ E D F+
Sbjct: 1 MDLNMRKVILLTGASRGIGTGSVATILAEDDEALRYGVARLLAELEGLKVAYGDDFVHVV 60
Query: 61 ANFSDRVSVEYLSKRVNEEMGGVDILVNNAGIVRD--SLFMR-ARYEDWDDVLSVNLTSA 117
+ ++ + L + ++ G DI+++NAG + D + + W +NL S
Sbjct: 61 GDITEEQLLGALREAPRKKGGKRDIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSM 120
Query: 118 FLLTRQLVPLMIRNRF-GRVINITSVVGFTGNAGQVNYCAAKSGLTGFTKALAQETGRRN 176
L + +P + ++ G V+N++S+ + YC++K+ + LA E +
Sbjct: 121 VSLVQWALPKLKKSPVNGNVVNVSSLAAVRPFSSWAAYCSSKAARNMYFMVLASEE-PFD 179
Query: 177 VTVNCVAPGFIGSDMTVNLTED 198
V V APG + + M V + E
Sbjct: 180 VRVLNYAPGVVDTQMQVCIRET 201
>gnl|CDD|36824 KOG1611, KOG1611, KOG1611, Predicted short chain-type dehydrogenase
[General function prediction only].
Length = 249
Score = 63.0 bits (153), Expect = 7e-11
Identities = 49/206 (23%), Positives = 89/206 (43%), Gaps = 22/206 (10%)
Query: 7 KKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVD----RFLLFPAN 62
K +TGA+ IGL + K L K + T+++ EK A R + +
Sbjct: 4 KSVFITGANRGIGLGLVKELLKDKGIEVIIATARD-PEKAATELALKSKSDSRVHIIQLD 62
Query: 63 FSDRVSVEYLSKRVNEEMG--GVDILVNNAGIVRD-SLFMRARYEDWDDVLSVNLTSAFL 119
+ S++ + V + +G G+++L+NNAGI + ++ + N L
Sbjct: 63 VTCDESIDNFVQEVEKIVGSDGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPIL 122
Query: 120 LTRQLVPLMIRNR-----------FGRVINITSVVGFTG---NAGQVNYCAAKSGLTGFT 165
LT+ +PL+ + +INI+S G G G Y +K+ L F
Sbjct: 123 LTQAFLPLLKKAASKVSGDGLSVSRAAIINISSSAGSIGGFRPGGLSAYRMSKAALNMFA 182
Query: 166 KALAQETGRRNVTVNCVAPGFIGSDM 191
K+L+ + ++ V + PG++ +DM
Sbjct: 183 KSLSVDLKDDHILVVSIHPGWVQTDM 208
>gnl|CDD|36423 KOG1209, KOG1209, KOG1209, 1-Acyl dihydroxyacetone phosphate
reductase and related dehydrogenases [Secondary
metabolites biosynthesis, transport and catabolism].
Length = 289
Score = 60.4 bits (146), Expect = 5e-10
Identities = 41/186 (22%), Positives = 70/186 (37%), Gaps = 10/186 (5%)
Query: 9 ALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFPANF---SD 65
+ +SG IG A+AK + G V E + ++A F L P
Sbjct: 11 LITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQFG------LKPYKLDVSKP 64
Query: 66 RVSVEYLSKRVNEEMGGVDILVNNAGIVRDSLFMRARYEDWDDVLSVNLTSAFLLTRQLV 125
V + G +D+L NNAG + A + VN+ + R L
Sbjct: 65 EEVVTVSGEVRANPDGKLDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALS 124
Query: 126 PLMIRNRFGRVINITSVVGFTGNAGQVNYCAAKSGLTGFTKALAQETGRRNVTVNCVAPG 185
+I+ + G ++N+ S+ G Y A+K+ + + + L E V V G
Sbjct: 125 HFLIKAK-GTIVNVGSLAGVVPFPFGSIYSASKAAIHAYARTLRLELKPFGVRVINAITG 183
Query: 186 FIGSDM 191
+ +D+
Sbjct: 184 GVATDI 189
>gnl|CDD|133446 cd01078, NAD_bind_H4MPT_DH, NADP binding domain of methylene
tetrahydromethanopterin dehydrogenase. Methylene
Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP
binding domain. NADP-dependent H4MPT DH catalyzes the
dehydrogenation of methylene- H4MPT and
methylene-tetrahydrofolate (H4F) with NADP+ as
cofactor. H4F and H4MPT are both cofactors that carry
the one-carbon units between the formyl and methyl
oxidation level. H4F and H4MPT are structurally
analogous to each other with respect to the pterin
moiety, but each has distinct side chain. H4MPT is
present only in anaerobic methanogenic archaea and
aerobic methylotrophic proteobacteria. H4MPT seems to
have evolved independently from H4F and functions as a
distinct carrier in C1 metabolism. Amino acid DH-like
NAD(P)-binding domains are members of the Rossmann fold
superfamily and include glutamate, leucine, and
phenylalanine DHs, methylene tetrahydrofolate DH,
methylene-tetrahydromethanopterin DH,
methylene-tetrahydropholate DH/cyclohydrolase,
Shikimate DH-like proteins, malate oxidoreductases, and
glutamyl tRNA reductase. Amino acid DHs catalyze the
deamination of amino acids to keto acids with NAD(P)+
as a cofactor. The NAD(P)-binding Rossmann fold
superfamily includes a wide variety of protein families
including NAD(P)- binding domains of alcohol DHs,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 194
Score = 43.9 bits (104), Expect = 4e-05
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 3 DLTGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAK 48
DL GK A+V G +G +G A +L ++GA V L G E+ +K A
Sbjct: 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAAD 70
>gnl|CDD|36691 KOG1478, KOG1478, KOG1478, 3-keto sterol reductase [Lipid transport
and metabolism].
Length = 341
Score = 41.1 bits (96), Expect = 2e-04
Identities = 46/232 (19%), Positives = 81/232 (34%), Gaps = 46/232 (19%)
Query: 7 KKALVTGASGSIGLAIAK-ILYKQGASVGLH----GTSQEKLEKVAKNF-----DDVDRF 56
K AL+TGA+ +GLAI K +L + +V L + K E V
Sbjct: 4 KVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPKSTIEV 63
Query: 57 LLFPANFSDRVSVEYLSKRVNEEMGGVDILVNNAGIVRD----------SLFMRA----- 101
+ S+ SV SK + + +D + NAGI+ + LF
Sbjct: 64 TYVLVDVSNMQSVFRASKDIKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMT 123
Query: 102 ------------RYEDWDDVLSVNLTSAFLLTRQLVPLMIRNRFGRVINITSVVG----- 144
+ ++ N+ F L R+L PL+ + +++ +S +
Sbjct: 124 SPTEGLLTQGKISADGLGEIFETNVFGHFYLIRELEPLLCHSDNPQLVWTSSRMARKKNL 183
Query: 145 ----FTGNAGQVNYCAAKSGLTGFTKALAQETGRRNVTVNCVAPGFIGSDMT 192
F + G+ Y ++K AL + + V PG ++
Sbjct: 184 SLEDFQHSKGKEPYSSSKRLTDLLHVALNRNFKPLGINQYVVQPGIFTTNSF 235
>gnl|CDD|36715 KOG1502, KOG1502, KOG1502, Flavonol reductase/cinnamoyl-CoA
reductase [Defense mechanisms].
Length = 327
Score = 41.0 bits (96), Expect = 3e-04
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 1 MFDLTGKKALVTGASGSIGLAIAKILYKQGASVGLHGT--SQEKLEKV--AKNFDDVDRF 56
M GKK VTGASG IG I K+L +G +V GT E +K + +
Sbjct: 1 MDQDEGKKVCVTGASGFIGSWIVKLLLSRGYTV--RGTVRDPEDEKKTEHLRKLEGAKER 58
Query: 57 L-LFPANFSD 65
L LF A+ D
Sbjct: 59 LKLFKADLLD 68
>gnl|CDD|30800 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell
envelope biogenesis, outer membrane / Carbohydrate
transport and metabolism].
Length = 314
Score = 39.6 bits (91), Expect = 0.001
Identities = 28/142 (19%), Positives = 51/142 (35%), Gaps = 19/142 (13%)
Query: 7 KKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFPANFSDR 66
+ LVTG +G IG + + L G V ++ L+ + + V + +DR
Sbjct: 1 MRILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLLSGVEFV------VLDLTDR 54
Query: 67 VSVEYLSKRVNEEMGGVDILVNNAGIVRDSLFMRARYEDWDDVLSVNLTSAFLLTRQLVP 126
V+ L+K V D +++ A + ++ DV T L+
Sbjct: 55 DLVDELAKGVP------DAVIHLAAQSSVPDSNASDPAEFLDV-------NVDGTLNLLE 101
Query: 127 LMIRNRFGRVINITSVVGFTGN 148
R + +SV G+
Sbjct: 102 AARAAGVKRFVFASSVSVVYGD 123
>gnl|CDD|144821 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family.
This family of proteins utilize NAD as a cofactor. The
proteins in this family use nucleotide-sugar substrates
for a variety of chemical reactions.
Length = 235
Score = 39.2 bits (92), Expect = 0.001
Identities = 29/134 (21%), Positives = 49/134 (36%), Gaps = 17/134 (12%)
Query: 9 ALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFPANFSDRVS 68
LVTG +G IG A+ + L ++G V + G + RF + +D +
Sbjct: 1 ILVTGGTGFIGSALVRRLLQEGYEVIVLGRRRRSESLN----TGRIRFRFHEGDLTDPDA 56
Query: 69 VEYLSKRVNEEMGGVDILVNNAGIVRDSLFMRARYEDWDDVLSVNLTSAFLLTRQLVPLM 128
+E L D +++ A A +ED + + N L T L+
Sbjct: 57 LERL-----LAEVQPDAVIHLAAQSGV----GASFEDPAEFIRAN----VLGTLNLLEAA 103
Query: 129 IRNRFGRVINITSV 142
R R + +S
Sbjct: 104 RRAGVKRFVFASSS 117
>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family.
NAD(P)(H)-dependent oxidoreductases are the major
enzymes in the interconversion of alcohols and
aldehydes, or ketones. This group contains proteins that
share the characteristic catalytic and structural
zinc-binding sites of the zinc-dependent alcohol
dehydrogenase family. Alcohol dehydrogenase in the
liver converts ethanol and NAD+ to acetaldehyde and
NADH, while in yeast and some other microorganisms ADH
catalyzes the conversion acetaldehyde to ethanol in
alcoholic fermentation. ADH is a member of the medium
chain alcohol dehydrogenase family (MDR), which have a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. The NAD(H)-binding region is comprised
of 2 structurally similar halves, each of which contacts
a mononucleotide. A GxGxxG motif after the first
mononucleotide contact half allows the close contact of
the coenzyme with the ADH backbone. The N-terminal
catalytic domain has a distant homology to GroES. These
proteins typically form dimers (typically higher plants,
mammals) or tetramers (yeast, bacteria), and have 2
tightly bound zinc atoms per subunit, a catalytic zinc
at the active site and a structural zinc in a lobe of
the catalytic domain. NAD(H)-binding occurs in the cleft
between the catalytic and coenzyme-binding domains at
the active site, and coenzyme binding induces a
conformational closing of this cleft. Coenzyme binding
typically precedes and contributes to substrate binding.
In human ADH catalysis, the zinc ion helps coordinate
the alcohol, followed by deprotonation of a histidine
(His-51), the ribose of NAD, a serine (Ser-48), then the
alcohol, which allows the transfer of a hydride to NAD+,
creating NADH and a zinc-bound aldehyde or ketone. In
yeast and some bacteria, the active site zinc binds an
aldehyde, polarizing it, and leading to the reverse
reaction.
Length = 332
Score = 35.8 bits (83), Expect = 0.011
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 13/87 (14%)
Query: 6 GKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFPANFSD 65
G LVTGA G +G+ ++ GA V S EKL+ + + D ++ + FS+
Sbjct: 163 GDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEKLKILKELGADY---VIDGSKFSE 219
Query: 66 RVSVEYLSKRVNEEMGGVDILVNNAGI 92
V +++GG D+++ G
Sbjct: 220 DV----------KKLGGADVVIELVGS 236
>gnl|CDD|30949 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent
oxidoreductases [Energy production and conversion /
General function prediction only].
Length = 326
Score = 35.4 bits (81), Expect = 0.016
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 16/140 (11%)
Query: 6 GKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFPANFSD 65
G+ LV GA+G +G A ++ GA+V +S EKLE + + A+
Sbjct: 143 GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKE----------LGADHVI 192
Query: 66 RVSVEYLSKRVNEEMGG--VDILVNNAG--IVRDSLFMRARYEDWDDVLSVNLTSAFLLT 121
E ++V E GG VD++++ G SL A V L+ +
Sbjct: 193 NYREEDFVEQVRELTGGKGVDVVLDTVGGDTFAASLAALAPGGRL--VSIGALSGGPPVP 250
Query: 122 RQLVPLMIRNRFGRVINITS 141
L+PL+ + R + + S
Sbjct: 251 LNLLPLLGKRLTLRGVTLGS 270
>gnl|CDD|31283 COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases
[Cell envelope biogenesis, outer membrane / Carbohydrate
transport and metabolism].
Length = 588
Score = 34.5 bits (79), Expect = 0.032
Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 4/73 (5%)
Query: 4 LTGKKALVTGASGSIGLAIAKILYKQGAS----VGLHGTSQEKLEKVAKNFDDVDRFLLF 59
LTGK LVTG GSIG + + + K ++ + + +
Sbjct: 248 LTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFY 307
Query: 60 PANFSDRVSVEYL 72
+ DR VE
Sbjct: 308 IGDVRDRDRVERA 320
>gnl|CDD|133451 cd05212, NAD_bind_m-THF_DH_Cyclohyd_like, NAD(P) binding domain
of methylene-tetrahydrofolate dehydrogenase and
methylene-tetrahydrofolate
dehydrogenase/cyclohydrolase. NAD(P) binding domains
of methylene-tetrahydrofolate dehydrogenase (m-THF DH)
and m-THF DH/cyclohydrolase bifunctional enzymes
(m-THF DH/cyclohydrolase). M-THF is a versatile carrier
of activated one-carbon units. The major one-carbon
folate donors are N-5 methyltetrahydrofolate,
N5,N10-m-THF, and N10-formayltetrahydrofolate. The
oxidation of metabolic intermediate m-THF to m-THF
requires the enzyme m-THF DH. In addition, most DHs
also have an associated cyclohydrolase activity which
catalyzes its hydrolysis to N10-formyltetrahydrofolate.
m-THF DH is typically found as part of a
multifunctional protein in eukaryotes. NADP-dependent
m-THF DH in mammals, birds and yeast are components of
a trifunctional enzyme with DH, cyclohydrolase, and
synthetase activities. Certain eukaryotic cells also
contain homodimeric bifunctional DH/cyclodrolase form.
In bacteria, mono-functional DH, as well as
bifunctional DH/cyclodrolase are found. In addition,
yeast (S. cerevisiae) also express a monofunctional DH.
M-THF DH, like other amino acid DH-like NAD(P)-binding
domains, is a member of the Rossmann fold superfamily
which includes glutamate, leucine, and phenylalanine
DHs, m-THF DH, methylene-tetrahydromethanopterin DH,
m-THF DH/cyclohydrolase, Shikimate DH-like proteins,
malate oxidoreductases, and glutamyl tRNA reductase.
Amino acid DHs catalyze the deamination of amino acids
to keto acids with NAD(P)+ as a cofactor. The
NAD(P)-binding Rossmann fold superfamily includes a
wide variety of protein families including NAD(P)-
binding domains of alcohol DHs, tyrosine-dependent
oxidoreductases, glyceraldehyde-3-phosphate DH,
lactate/malate DHs, formate/glycerate DHs, siroheme
synthases, 6-phosphogluconate DH, amino acid DHs,
repressor rex, NAD-binding potassium channel domain,
CoA-binding, and ornithine cyclodeaminase-like domains.
These domains have an alpha-beta-alpha configuration.
NAD binding involves numerous hydrogen and van der
Waals contacts.
Length = 140
Score = 32.9 bits (75), Expect = 0.082
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 3 DLTGKKALVTGASGSIGLAIAKILYKQGASV-GLHGTSQEKLEKVAK 48
L GKK LV G SG +G + +L + GA+V + + KV
Sbjct: 25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHD 71
>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family. This
group contains members identified as related to
zinc-dependent alcohol dehydrogenase and other members
of the MDR family. The medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, which contains the
zinc-dependent alcohol dehydrogenase (ADH-Zn) and
related proteins, is a diverse group of proteins related
to the first identified member, class I mammalian ADH.
MDRs display a broad range of activities and are
distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P)-binding Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group includes
various activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has a
catalytic role, while structural zinc aids in stability.
ADH-like proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and generally have 2 tightly bound zinc atoms per
subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 337
Score = 32.5 bits (75), Expect = 0.098
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 6 GKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFPANFSD 65
G LV GA G IGL + ++ +GA V + E+LE A+ D + + +
Sbjct: 160 GDTVLVVGA-GPIGLGVIQVAKARGARVIVVDIDDERLE-FARELGADDTINVGDEDVAA 217
Query: 66 RVS 68
R+
Sbjct: 218 RLR 220
>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
The medium chain reductase/dehydrogenases
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH) , quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. ADH-like proteins
typically form dimers (typically higher plants, mammals)
or tetramers (yeast, bacteria), and generally have 2
tightly bound zinc atoms per subunit, a catalytic zinc
at the active site and a structural zinc in a lobe of
the catalytic domain. The active site zinc is
coordinated by a histidine, two cysteines, and a water
molecule. The second zinc seems to play a structural
role, affects subunit interactions, and is typically
coordinated by 4 cysteines. Other MDR members have only
a catalytic zinc, and some contain no coordinated zinc.
Length = 271
Score = 32.3 bits (74), Expect = 0.12
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 10/86 (11%)
Query: 6 GKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFPANFSD 65
G LV GA G +GL A++ GA V + S EKLE + L + D
Sbjct: 135 GDTVLVLGA-GGVGLLAAQLAKAAGARVIVTDRSDEKLELAKE---------LGADHVID 184
Query: 66 RVSVEYLSKRVNEEMGGVDILVNNAG 91
+ + GG D++++ G
Sbjct: 185 YKEEDLEEELRLTGGGGADVVIDAVG 210
>gnl|CDD|176210 cd08248, RTN4I1, Human Reticulon 4 Interacting Protein 1. Human
Reticulon 4 Interacting Protein 1 is a member of the
medium chain dehydrogenase/ reductase (MDR) family.
Riticulons are endoplasmic reticulum associated proteins
involved in membrane trafficking and neuroendocrine
secretion. The MDR/zinc-dependent alcohol
dehydrogenase-like family, which contains the
zinc-dependent alcohol dehydrogenase (ADH-Zn) and
related proteins, is a diverse group of proteins related
to the first identified member, class I mammalian ADH.
MDRs display a broad range of activities and are
distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES.
Length = 350
Score = 32.2 bits (74), Expect = 0.13
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 5 TGKKALVTGASGSIGLAIAKILYKQGASV 33
GK+ L+ G SG +G ++L GA V
Sbjct: 162 AGKRVLILGGSGGVGTFAIQLLKAWGAHV 190
>gnl|CDD|36412 KOG1198, KOG1198, KOG1198, Zinc-binding oxidoreductase [Energy
production and conversion, General function prediction
only].
Length = 347
Score = 31.9 bits (72), Expect = 0.17
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 5 TGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFPANFS 64
GK LV G SG +G A ++ GA + S+EKLE V K D +
Sbjct: 157 KGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLELVKKL--GADEVV------- 207
Query: 65 DRVSVEYLSKRVNEEMGGVDILVNNAG 91
D + GVD++++ G
Sbjct: 208 DYKDENVVELIKKYTGKGVDVVLDCVG 234
>gnl|CDD|35292 KOG0069, KOG0069, KOG0069, Glyoxylate/hydroxypyruvate reductase
(D-isomer-specific 2-hydroxy acid dehydrogenase
superfamily) [Energy production and conversion].
Length = 336
Score = 31.5 bits (71), Expect = 0.20
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 11/99 (11%)
Query: 1 MFDLTGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFP 60
+DL GK + G G IG AIAK L G + H +Q E+ + + +
Sbjct: 157 GYDLEGKTVGILGL-GRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDIEELL 215
Query: 61 ANFSDRVSV---------EYLSKRVNEEMGGVDILVNNA 90
AN SD + V ++K+ E+M +LVN A
Sbjct: 216 AN-SDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTA 253
>gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR). QOR catalyzes the
conversion of a quinone + NAD(P)H to a hydroquinone +
NAD(P)+. Quinones are cyclic diones derived from
aromatic compounds. Membrane bound QOR acts in the
respiratory chains of bacteria and mitochondria, while
soluble QOR acts to protect from toxic quinones (e.g.
DT-diaphorase) or as a soluble eye-lens protein in some
vertebrates (e.g. zeta-crystalin). QOR reduces quinones
through a semi-quinone intermediate via a
NAD(P)H-dependent single electron transfer. QOR is a
member of the medium chain dehydrogenase/reductase
family, but lacks the zinc-binding sites of the
prototypical alcohol dehydrogenases of this group.
NAD(P)(H)-dependent oxidoreductases are the major
enzymes in the interconversion of alcohols and
aldehydes, or ketones. Alcohol dehydrogenase in the
liver converts ethanol and NAD+ to acetaldehyde and
NADH, while in yeast and some other microorganisms ADH
catalyzes the conversion acetaldehyde to ethanol in
alcoholic fermentation. ADH is a member of the medium
chain alcohol dehydrogenase family (MDR), which has a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. The NAD(H)-binding region is comprised
of 2 structurally similar halves, each of which contacts
a mononucleotide. A GxGxxG motif after the first
mononucleotide contact half allows the close contact of
the coenzyme with the ADH backbone. The N-terminal
catalytic domain has a distant homology to GroES. These
proteins typically form dimers (typically higher plants,
mammals) or tetramers (yeast, bacteria), and have 2
tightly bound zinc atoms per subunit, a catalytic zinc
at the active site, and a structural zinc in a lobe of
the catalytic domain. NAD(H)-binding occurs in the
cleft between the catalytic and coenzyme-binding domains
at the active site, and coenzyme binding induces a
conformational closing of this cleft. Coenzyme binding
typically precedes and contributes to substrate binding.
In human ADH catalysis, the zinc ion helps coordinate
the alcohol, followed by deprotonation of a histidine,
the ribose of NAD, a serine, then the alcohol, which
allows the transfer of a hydride to NAD+, creating NADH
and a zinc-bound aldehyde or ketone. In yeast and some
bacteria, the active site zinc binds an aldehyde,
polarizing it, and leading to the reverse reaction.
Length = 323
Score = 31.7 bits (73), Expect = 0.21
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
Query: 6 GKKALVTGASGSIGLA---IAKILYKQGASVGLHGTSQEKLEKV 46
G+ LV GA+G +GLA +AK L GA V +S+EKL
Sbjct: 140 GETVLVLGAAGGVGLAAVQLAKAL---GARVIAAASSEEKLALA 180
>gnl|CDD|30539 COG0190, FolD, 5,10-methylene-tetrahydrofolate
dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase
[Coenzyme metabolism].
Length = 283
Score = 31.7 bits (72), Expect = 0.22
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 3 DLTGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFD 51
DL GK +V G S +G +A +L A+V + + + L + KN D
Sbjct: 153 DLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRTKDLASITKNAD 201
>gnl|CDD|176234 cd08273, MDR8, Medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
This group is a member of the medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, but lacks the zinc-binding
sites of the zinc-dependent alcohol dehydrogenases. The
medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P)-binding Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability. ADH-like proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and generally have 2 tightly bound zinc atoms
per subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 331
Score = 31.5 bits (72), Expect = 0.24
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 4 LTGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEK 42
LTG++ L+ GASG +G A+ ++ GA V +GT+ E+
Sbjct: 138 LTGQRVLIHGASGGVGQALLELALLAGAEV--YGTASER 174
>gnl|CDD|133452 cd05213, NAD_bind_Glutamyl_tRNA_reduct, NADP-binding domain of
glutamyl-tRNA reductase. Glutamyl-tRNA reductase
catalyzes the conversion of glutamyl-tRNA to
glutamate-1-semialdehyde, initiating the synthesis of
tetrapyrrole. Whereas tRNAs are generally associated
with peptide bond formation in protein translation, here
the tRNA activates glutamate in the initiation of
tetrapyrrole biosynthesis in archaea, plants and many
bacteria. In the first step, activated glutamate is
reduced to glutamate-1-semi-aldehyde via the NADPH
dependent glutamyl-tRNA reductase. Glutamyl-tRNA
reductase forms a V-shaped dimer. Each monomer has 3
domains: an N-terminal catalytic domain, a classic
nucleotide binding domain, and a C-terminal dimerization
domain. Although the representative structure 1GPJ lacks
a bound NADPH, a theoretical binding pocket has been
described. (PMID 11172694). Amino acid dehydrogenase
(DH)-like NAD(P)-binding domains are members of the
Rossmann fold superfamily and include glutamate,
leucine, and phenylalanine DHs, methylene
tetrahydrofolate DH, methylene-tetrahydromethanopterin
DH, methylene-tetrahydropholate DH/cyclohydrolase,
Shikimate DH-like proteins, malate oxidoreductases, and
glutamyl tRNA reductase. Amino acid DHs catalyze the
deamination of amino acids to keto acids with NAD(P)+ as
a cofactor. The NAD(P)-binding Rossmann fold superfamily
includes a wide variety of protein families including
NAD(P)- binding domains of alcohol DHs,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 311
Score = 31.1 bits (71), Expect = 0.31
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 1 MFDLTGKKALVTGASGSIGLAIAKILYKQGAS-VGLHGTSQEKLEKVAKNFD 51
+L GKK LV GA G +G AK L +G + + + + E+ E++AK
Sbjct: 173 FGNLKGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERAEELAKELG 223
>gnl|CDD|31286 COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope
biogenesis, outer membrane].
Length = 345
Score = 31.0 bits (70), Expect = 0.34
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 5 TGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQE 41
GK AL+TG +G G +A++L ++G V HG +
Sbjct: 1 MGKVALITGITGQDGSYLAELLLEKGYEV--HGIKRR 35
>gnl|CDD|34587 COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein].
Length = 866
Score = 30.8 bits (69), Expect = 0.35
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 6 GKKALVTGAS-GSIGLAIAKILYKQGASVGLHGT--SQEKLEKVAKNFDDVDR----FLL 58
K ALVTGAS GSI A+ L GA+V + S+E+ E + R +
Sbjct: 396 DKVALVTGASKGSIAAAVVARLLAGGATVIATTSRLSEERTEFYRSLYARHARYGAALWV 455
Query: 59 FPANFSDRVSVEYLSKRVNEE 79
PAN V+ L + + +E
Sbjct: 456 VPANMGSYSDVDALIEWIGDE 476
>gnl|CDD|31834 COG1648, CysG, Siroheme synthase (precorrin-2
oxidase/ferrochelatase domain) [Coenzyme metabolism].
Length = 210
Score = 30.7 bits (69), Expect = 0.41
Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 19/112 (16%)
Query: 1 MFDLTGKKALVTGASGSIGLAIAKILYKQGASVGLHGTS----------QEKLEKVAKNF 50
DL GKK LV G GS+ L A++L K GA V + + K++ + + F
Sbjct: 7 FLDLEGKKVLVVG-GGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREF 65
Query: 51 D---DVDRFLLFPANFSDRVSVEYLSKRVNEEMGGVDILVNNAGIVRDSLFM 99
D D FL+ A E L++R+ + ILVN F+
Sbjct: 66 DAEDLDDAFLVIAA-----TDDEELNERIAKAARERRILVNVVDDPELCDFI 112
>gnl|CDD|144908 pfam01488, Shikimate_DH, Shikimate / quinate 5-dehydrogenase.
This family contains both shikimate and quinate
dehydrogenases. Shikimate 5-dehydrogenase catalyses the
conversion of shikimate to 5-dehydroshikimate. This
reaction is part of the shikimate pathway which is
involved in the biosynthesis of aromatic amino acids.
Quinate 5-dehydrogenase catalyses the conversion of
quinate to 5-dehydroquinate. This reaction is part of
the quinate pathway where quinic acid is exploited as a
source of carbon in prokaryotes and microbial
eukaryotes. Both the shikimate and quinate pathways
share two common pathway metabolites 3-dehydroquinate
and dehydroshikimate.
Length = 134
Score = 30.4 bits (69), Expect = 0.52
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 3 DLTGKKALVTGASGSIGLAIAKILYKQGAS-VGLHGTSQEKLEKVAKNFDDV 53
DL GKK L+ GA G + AK L +GA + + + EK +++A+ F
Sbjct: 9 DLKGKKVLLIGA-GEMARLAAKHLLSKGAKKITIANRTLEKAKELAEEFGGE 59
>gnl|CDD|36416 KOG1202, KOG1202, KOG1202, Animal-type fatty acid synthase and
related proteins [Lipid transport and metabolism].
Length = 2376
Score = 29.9 bits (67), Expect = 0.57
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 79 EMGGVDILVNNAGIVRDSLFMRARYEDWDDVLSVNLTSAFLL---TRQLVPLMIRNRFGR 135
++G V + N A ++RD L +++ DV + L +R++ P +
Sbjct: 1845 KLGPVGGIFNLAAVLRDGLIENQTPKNFKDVAKPKYSGTINLDRVSREICPEL-----DY 1899
Query: 136 VINITSVVGFTGNAGQVNYCAAKSGL 161
+ +SV GNAGQ NY A S +
Sbjct: 1900 FVVFSSVSCGRGNAGQTNYGLANSAM 1925
>gnl|CDD|31287 COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase
[General function prediction only].
Length = 297
Score = 29.8 bits (67), Expect = 0.68
Identities = 35/163 (21%), Positives = 58/163 (35%), Gaps = 25/163 (15%)
Query: 10 LVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFPANFSDRVSV 69
L+TG +G IG A+ L K G V + K A+ + +V
Sbjct: 2 LITGGTGLIGRALTARLRKGGHQVTILTRRPPK------------------ASQNLHPNV 43
Query: 70 EYLSKRVNEEMGGVDILVNNAGIVRDSLFMRARYEDWDDVLSVNLTSAFLLTRQLVPLM- 128
+ G+D ++N AG + + R E + + S T +LV L+
Sbjct: 44 TLWEGLADALTLGIDAVINLAG---EPIAERRWTEKQKEEI---RQSRINTTEKLVELIA 97
Query: 129 IRNRFGRVINITSVVGFTGNAGQVNYCAAKSGLTGFTKALAQE 171
+V+ S VG+ G++G F L Q+
Sbjct: 98 ASETKPKVLISASAVGYYGHSGDRVVTEESPPGDDFLAQLCQD 140
>gnl|CDD|145831 pfam02882, THF_DHG_CYH_C, Tetrahydrofolate
dehydrogenase/cyclohydrolase, NAD(P)-binding domain.
Length = 159
Score = 29.7 bits (68), Expect = 0.72
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 3 DLTGKKALVTGASGSIGLAIAKILYKQGASV 33
DL GK +V G S +G +A +L A+V
Sbjct: 33 DLAGKNVVVIGRSNIVGKPLALLLLNANATV 63
>gnl|CDD|176184 cd05281, TDH, Threonine dehydrogenase. L-threonine dehydrogenase
(TDH) catalyzes the zinc-dependent formation of
2-amino-3-ketobutyrate from L-threonine via NAD(H)-
dependent oxidation. THD is a member of the
zinc-requiring, medium chain NAD(H)-dependent alcohol
dehydrogenase family (MDR). MDRs have a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. NAD(P)(H)-dependent oxidoreductases are
the major enzymes in the interconversion of alcohols and
aldehydes, or ketones. The N-terminal region typically
has an all-beta catalytic domain. These proteins
typically form dimers (typically higher plants, mammals)
or tetramers (yeast, bacteria) and have 2 tightly bound
zinc atoms per subunit. Sorbitol and aldose reductase
are NAD(+) binding proteins of the polyol pathway, which
interconverts glucose and fructose.
Length = 341
Score = 29.5 bits (67), Expect = 0.78
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 3 DLTGKKALVTGASGSIGLAIAKILYKQGAS 32
D++GK L+TG G IGL + GAS
Sbjct: 161 DVSGKSVLITGC-GPIGLMAIAVAKAAGAS 189
>gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
This group is a member of the medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, but lacks the zinc-binding
sites of the zinc-dependent alcohol dehydrogenases. The
medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P)-binding Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability. ADH-like proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and generally have 2 tightly bound zinc atoms
per subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 328
Score = 29.5 bits (67), Expect = 0.80
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 10 LVTGASGSIGLAIAKILYKQGASV 33
L+T AS S+GLA +I GA+V
Sbjct: 149 LITAASSSVGLAAIQIANAAGATV 172
>gnl|CDD|38800 KOG3593, KOG3593, KOG3593, Predicted receptor-like serine/threonine
kinase [Signal transduction mechanisms].
Length = 355
Score = 29.3 bits (65), Expect = 0.95
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 21 AIAKILYKQGASVGLHGT--SQEKLEKVAKNFDDVDRFLLFPANFSDRVSVEYLSKRVNE 78
I + A+V +G + + LE V + D L + + Y ++R NE
Sbjct: 60 VIPAVNCGGDAAVDNYGIRFAADPLEGVGRA-SDYGMVLGIGCRAEEEDIILYQTERYNE 118
Query: 79 EMGGVDILVNNAG 91
E G D+ + G
Sbjct: 119 ETFGYDVPIKEDG 131
>gnl|CDD|31252 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases
[Energy production and conversion / Coenzyme metabolism
/ General function prediction only].
Length = 324
Score = 29.4 bits (66), Expect = 0.97
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 1 MFDLTGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVD 54
FDL GK + G G IG A+A+ L G V + S + VD
Sbjct: 141 GFDLRGKTLGIIGL-GRIGQAVARRLKGFGMKVLYYDRSPNPEAEKELGARYVD 193
>gnl|CDD|34904 COG5322, COG5322, Predicted dehydrogenase [General function
prediction only].
Length = 351
Score = 29.2 bits (65), Expect = 1.0
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 3 DLTGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEK 45
DL+ + GA+G I AIA+ L + L E +
Sbjct: 164 DLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNR 206
>gnl|CDD|133419 cd00650, LDH_MDH_like, NAD-dependent, lactate dehydrogenase-like,
2-hydroxycarboxylate dehydrogenase family. Members of
this family include ubiquitous enzymes like L-lactate
dehydrogenases (LDH), L-2-hydroxyisocaproate
dehydrogenases, and some malate dehydrogenases (MDH).
LDH catalyzes the last step of glycolysis in which
pyruvate is converted to L-lactate. MDH is one of the
key enzymes in the citric acid cycle, facilitating both
the conversion of malate to oxaloacetate and
replenishing levels of oxalacetate by reductive
carboxylation of pyruvate. The LDH/MDH-like proteins are
part of the NAD(P)-binding Rossmann fold superfamily,
which includes a wide variety of protein families
including the NAD(P)-binding domains of alcohol
dehydrogenases, tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate dehydrogenases,
formate/glycerate dehydrogenases, siroheme synthases,
6-phosphogluconate dehydrogenases, aminoacid
dehydrogenases, repressor rex, and NAD-binding potassium
channel domains, among others.
Length = 263
Score = 29.2 bits (66), Expect = 1.1
Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 20/102 (19%)
Query: 11 VTGASGSIGLAIAKILYKQGASVG----LHGTSQEKLEKVAKNFDDVDRFLLFPANFS-- 64
V GA G++G A+A L + L+ +EKL+ VA D+ + A+
Sbjct: 3 VIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVA---MDLQDAVEPLADIKVS 59
Query: 65 ---------DRVSVEYLSKRVN--EEMGGVDILVNNAGIVRD 95
V ++ V MG +D+L N IV++
Sbjct: 60 ITDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKE 101
>gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
This group is a member of the medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, but lacks the zinc-binding
sites of the zinc-dependent alcohol dehydrogenases. The
medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P)-binding Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability. ADH-like proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and generally have 2 tightly bound zinc atoms
per subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 319
Score = 29.1 bits (66), Expect = 1.2
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 6/31 (19%)
Query: 6 GKKALVTGASGSIGLA---IAKILYKQGASV 33
G++ L+ GASG +G IAK L GA V
Sbjct: 144 GQRVLINGASGGVGTFAVQIAKAL---GAHV 171
>gnl|CDD|31264 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General
function prediction only].
Length = 339
Score = 29.0 bits (65), Expect = 1.3
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 6 GKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAK 48
GK V GA G +G + GA V S+EKLE K
Sbjct: 167 GKWVAVVGAGG-LGHMAVQYAKAMGAEVIAITRSEEKLELAKK 208
>gnl|CDD|176231 cd08270, MDR4, Medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
This group is a member of the medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, but lacks the zinc-binding
sites of the zinc-dependent alcohol dehydrogenases. The
medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P)-binding Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability. ADH-like proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and generally have 2 tightly bound zinc atoms
per subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 305
Score = 28.9 bits (65), Expect = 1.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 3 DLTGKKALVTGASGSIGLAIAKILYKQGASV 33
L G++ LVTGASG +G ++ GA V
Sbjct: 130 PLLGRRVLVTGASGGVGRFAVQLAALAGAHV 160
>gnl|CDD|176205 cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase
(QOR). NAD(P)(H)-dependent oxidoreductases are the
major enzymes in the interconversion of alcohols and
aldehydes, or ketones. The medium chain alcohol
dehydrogenase family (MDR) have a NAD(P)(H)-binding
domain in a Rossmann fold of a beta-alpha form. The
N-terminal region typically has an all-beta catalytic
domain. These proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and have 2 tightly bound zinc atoms per subunit.
Length = 320
Score = 28.7 bits (65), Expect = 1.4
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 19/97 (19%)
Query: 6 GKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFPANFSD 65
G L+ G + S+GLA K+ GA+V T + R L +D
Sbjct: 143 GDTLLIRGGTSSVGLAALKLAKALGATV-TATTRSPE------------RAALLKELGAD 189
Query: 66 RVSVE--YLSKRVNEEMGGVDI---LVNNAGIVRDSL 97
V ++ +++++ GG D LV A ++DSL
Sbjct: 190 EVVIDDGAIAEQLRAAPGGFDKVLELVGTA-TLKDSL 225
>gnl|CDD|133443 cd01065, NAD_bind_Shikimate_DH, NAD(P) binding domain of
Shikimate dehydrogenase. Shikimate dehydrogenase (DH)
is an amino acid DH family member. Shikimate pathway
links metabolism of carbohydrates to de novo
biosynthesis of aromatic amino acids, quinones and
folate. It is essential in plants, bacteria, and fungi
but absent in mammals, thus making enzymes involved in
this pathway ideal targets for broad spectrum
antibiotics and herbicides. Shikimate DH catalyzes the
reduction of 3-hydroshikimate to shikimate using the
cofactor NADH. Amino acid DH-like NAD(P)-binding
domains are members of the Rossmann fold superfamily
and include glutamate, leucine, and phenylalanine DHs,
methylene tetrahydrofolate DH,
methylene-tetrahydromethanopterin DH,
methylene-tetrahydropholate DH/cyclohydrolase,
Shikimate DH-like proteins, malate oxidoreductases, and
glutamyl tRNA reductase. Amino acid DHs catalyze the
deamination of amino acids to keto acids with NAD(P)+
as a cofactor. The NAD(P)-binding Rossmann fold
superfamily includes a wide variety of protein families
including NAD(P)- binding domains of alcohol DHs,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DHs, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 155
Score = 28.4 bits (64), Expect = 1.9
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 16/89 (17%)
Query: 1 MFDLTGKKALVTGASGSIGLAIAKILYKQGAS-VGLHGTSQEKLEKVAKNFDDVDRFLLF 59
+L GKK L+ GA G+ A+A L + GA+ + + + EK + +A+ F + L
Sbjct: 14 GIELKGKKVLILGAGGA-ARAVAYALAELGAAKIVIVNRTLEKAKALAERFGE----LGI 68
Query: 60 PANFSDRVSVEYLSKRVNEEMGGVDILVN 88
+ D + E + D+++N
Sbjct: 69 AIAYLD----------LEELLAEADLIIN 87
>gnl|CDD|30722 COG0373, HemA, Glutamyl-tRNA reductase [Coenzyme metabolism].
Length = 414
Score = 28.3 bits (63), Expect = 1.9
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 3 DLTGKKALVTGASGSIGLAIAKILYKQGAS-VGLHGTSQEKLEKVAKNFD 51
L KK LV GA G +G +AK L ++G + + + E+ E++AK
Sbjct: 175 SLKDKKVLVIGA-GEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLG 223
>gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase. L-threonine
dehydrogenase (TDH) catalyzes the zinc-dependent
formation of 2-amino-3-ketobutyrate from L-threonine,
via NAD(H)-dependent oxidation. THD is a member of the
zinc-requiring, medium chain NAD(H)-dependent alcohol
dehydrogenase family (MDR). MDRs have a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. NAD(P)(H)-dependent oxidoreductases are
the major enzymes in the interconversion of alcohols and
aldehydes, or ketones. The N-terminal region typically
has an all-beta catalytic domain. These proteins
typically form dimers (typically higher plants, mammals)
or tetramers (yeast, bacteria), and have 2 tightly
bound zinc atoms per subunit. Sorbitol and aldose
reductase are NAD(+) binding proteins of the polyol
pathway, which interconverts glucose and fructose.
Length = 334
Score = 28.3 bits (64), Expect = 2.3
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 6 GKKALVTGASGSIGLAIAKILYKQGAS-VGLHGTSQEKLE 44
G LV GA G IGL +A++L GAS V + ++EKLE
Sbjct: 160 GDSVLVFGA-GPIGLLLAQLLKLNGASRVTVAEPNEEKLE 198
>gnl|CDD|176235 cd08274, MDR9, Medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
This group is a member of the medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, but lacks the zinc-binding
sites of the zinc-dependent alcohol dehydrogenases. The
medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P)-binding Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability. ADH-like proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and generally have 2 tightly bound zinc atoms
per subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 350
Score = 28.0 bits (63), Expect = 2.5
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 5 TGKKALVTGASGSIGLAIAKILYKQGASV 33
G+ LVTGASG +G A+ ++ ++GA V
Sbjct: 177 AGETVLVTGASGGVGSALVQLAKRRGAIV 205
>gnl|CDD|176179 cd05195, enoyl_red, enoyl reductase of polyketide synthase.
Putative enoyl reductase of polyketide synthase.
Polyketide synthases produce polyketides in step by step
mechanism that is similar to fatty acid synthesis. Enoyl
reductase reduces a double to single bond. Erythromycin
is one example of a polyketide generated by 3 complex
enzymes (megasynthases). 2-enoyl thioester reductase
(ETR) catalyzes the NADPH-dependent dependent conversion
of trans-2-enoyl acyl carrier protein/coenzyme A
(ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis.
2-enoyl thioester reductase activity has been linked in
Candida tropicalis as essential in maintaining
mitiochondrial respiratory function. This ETR family is
a part of the medium chain dehydrogenase/reductase
family, but lack the zinc coordination sites
characteristic of the alcohol dehydrogenases in this
family. NAD(P)(H)-dependent oxidoreductases are the
major enzymes in the interconversion of alcohols and
aldehydes or ketones. Alcohol dehydrogenase in the liver
converts ethanol and NAD+ to acetaldehyde and NADH,
while in yeast and some other microorganisms ADH
catalyzes the conversion acetaldehyde to ethanol in
alcoholic fermentation. ADH is a member of the medium
chain alcohol dehydrogenase family (MDR), which has a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. The NAD(H)-binding region is comprised
of 2 structurally similar halves, each of which contacts
a mononucleotide. The N-terminal catalytic domain has a
distant homology to GroES. These proteins typically
form dimers (typically higher plants, mammals) or
tetramers (yeast, bacteria), and have 2 tightly bound
zinc atoms per subunit, a catalytic zinc at the active
site, and a structural zinc in a lobe of the catalytic
domain. NAD(H) binding occurs in the cleft between the
catalytic and coenzyme-binding domains, at the active
site, and coenzyme binding induces a conformational
closing of this cleft. Coenzyme binding typically
precedes and contributes to substrate binding.
Length = 293
Score = 27.9 bits (63), Expect = 2.5
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 20/90 (22%)
Query: 6 GKKALVTGASGSIGLA---IAKILYKQGASVGLHGT--SQEKLEKVAKNFDDVDRFLLFP 60
G+ L+ A+G +G A +A+ L GA V T S+EK E + + VD
Sbjct: 109 GESVLIHAAAGGVGQAAIQLAQHL---GAEV--FATVGSEEKREFLRELGGPVDHI---- 159
Query: 61 ANFSDRVSVEYLSKRVNEEMG--GVDILVN 88
FS R + + G GVD+++N
Sbjct: 160 --FSSRDL--SFADGILRATGGRGVDVVLN 185
>gnl|CDD|176194 cd08232, idonate-5-DH, L-idonate 5-dehydrogenase. L-idonate
5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion
of L-lodonate to 5-ketogluconate in the metabolism of
L-Idonate to 6-P-gluconate. In E. coli, this GntII
pathway is a subsidiary pathway to the canonical GntI
system, which also phosphorylates and transports
gluconate. L-ido 5-DH is found in an operon with a
regulator indR, transporter idnT, 5-keto-D-gluconate
5-reductase, and Gnt kinase. L-ido 5-DH is a
zinc-dependent alcohol dehydrogenase-like protein. The
alcohol dehydrogenase ADH-like family of proteins is a
diverse group of proteins related to the first
identified member, class I mammalian ADH. This group is
also called the medium chain dehydrogenases/reductase
family (MDR) which displays a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases(~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal GroES-like catalytic
domain. The MDR group contains a host of activities,
including the founding alcohol dehydrogenase (ADH),
quinone reductase, sorbitol dehydrogenase, formaldehyde
dehydrogenase, butanediol DH, ketose reductase, cinnamyl
reductase, and numerous others. The zinc-dependent
alcohol dehydrogenases (ADHs) catalyze the
NAD(P)(H)-dependent interconversion of alcohols to
aldehydes or ketones. ADH-like proteins typically form
dimers (typically higher plants, mammals) or tetramers
(yeast, bacteria), and generally have 2 tightly bound
zinc atoms per subunit. The active site zinc is
coordinated by a histidine, two cysteines, and a water
molecule. The second zinc seems to play a structural
role, affects subunit interactions, and is typically
coordinated by 4 cysteines.
Length = 339
Score = 28.0 bits (63), Expect = 2.8
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 3 DLTGKKALVTGASGSIGLAIAKILYKQGAS 32
DL GK+ LVTGA G IG + + GA+
Sbjct: 163 DLAGKRVLVTGA-GPIGALVVAAARRAGAA 191
>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase.
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent
medium chain alcohol dehydrogenase, catalyzes the
NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and
meso-butanediol to acetoin. BDH functions as a
homodimer. NAD(P)(H)-dependent oxidoreductases are the
major enzymes in the interconversion of alcohols and
aldehydes, or ketones. The medium chain alcohol
dehydrogenase family (MDR) have a NAD(P)(H)-binding
domain in a Rossmann fold of a beta-alpha form. The
N-terminal region typically has an all-beta catalytic
domain. These proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and have 2 tightly bound zinc atoms per subunit.
Sorbitol and aldose reductase are NAD(+) binding
proteins of the polyol pathway, which interconverts
glucose and fructose. Sorbitol dehydrogenase is
tetrameric and has a single catalytic zinc per subunit.
Length = 351
Score = 27.9 bits (63), Expect = 2.9
Identities = 14/27 (51%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 6 GKKALVTGASGSIGLAIAKILYKQGAS 32
G ALV GA G IGL L GAS
Sbjct: 173 GDTALVLGA-GPIGLLTILALKAAGAS 198
>gnl|CDD|111992 pfam03155, Alg6_Alg8, ALG6, ALG8 glycosyltransferase family.
N-linked (asparagine-linked) glycosylation of proteins
is mediated by a highly conserved pathway in eukaryotes,
in which a lipid (dolichol phosphate)-linked
oligosaccharide is assembled at the endoplasmic
reticulum membrane prior to the transfer of the
oligosaccharide moiety to the target asparagine
residues. This oligosaccharide is composed of
Glc(3)Man(9)GlcNAc(2). The addition of the three glucose
residues is the final series of steps in the synthesis
of the oligosaccharide precursor. Alg6 transfers the
first glucose residue, and Alg8 transfers the second
one. In the human alg6 gene, a C->T transition, which
causes Ala333 to be replaced with Val, has been
identified as the cause of a congenital disorder of
glycosylation, designated as type Ic OMIM:603147.
Length = 463
Score = 27.7 bits (62), Expect = 3.0
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 117 AFLLTRQLVPLMIRNRFGRVINITSVVGFT 146
+LL R L RN F R++ + VV T
Sbjct: 198 VYLLRRCLNKKNFRNSFARILKLALVVVGT 227
>gnl|CDD|176219 cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family. This
group shares the zinc coordination sites of the
zinc-dependent alcohol dehydrogenases. The medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, which contains the
zinc-dependent alcohol dehydrogenase (ADH-Zn) and
related proteins, is a diverse group of proteins related
to the first identified member, class I mammalian ADH.
MDRs display a broad range of activities and are
distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P)-binding Rossmann fold domain of an
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability. ADH-like proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and generally have 2 tightly bound zinc atoms
per subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 306
Score = 27.7 bits (62), Expect = 3.4
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 18/94 (19%)
Query: 6 GKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLE-KVAKN--FDDVDRFLLFPAN 62
G +V G G IGL A++ QGA+V + GT ++++ VAK D V+
Sbjct: 165 GDTVVVFG-PGPIGLLAAQVAKLQGATVVVVGTEKDEVRLDVAKELGADAVN-------- 215
Query: 63 FSDRVSVEYLSKRVNEEMG--GVDILVNNAGIVR 94
E L++ VNE G D+++ +G V
Sbjct: 216 ----GGEEDLAELVNEITDGDGADVVIECSGAVP 245
>gnl|CDD|146532 pfam03949, Malic_M, Malic enzyme, NAD binding domain.
Length = 255
Score = 27.5 bits (62), Expect = 3.7
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 12/57 (21%)
Query: 4 LTGK-----KALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDR 55
+TGK K + GA G+ G+ IA++L GL E+ KN VDR
Sbjct: 18 ITGKPLSDQKIVFFGA-GAAGIGIAELLVAAMVREGL------SEEEARKNIWMVDR 67
>gnl|CDD|176209 cd08247, AST1_like, AST1 is a cytoplasmic protein associated with
the periplasmic membrane in yeast. This group contains
members identified in targeting of yeast membrane
proteins ATPase. AST1 is a cytoplasmic protein
associated with the periplasmic membrane in yeast,
identified as a multicopy suppressor of pma1 mutants
which cause temperature sensitive growth arrest due to
the inability of ATPase to target to the cell surface.
This family is homologous to the medium chain family of
dehydrogenases and reductases. Medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, which contains the
zinc-dependent alcohol dehydrogenase (ADH-Zn) and
related proteins, is a diverse group of proteins related
to the first identified member, class I mammalian ADH.
MDRs display a broad range of activities and are
distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of an
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES.
Length = 352
Score = 27.2 bits (61), Expect = 3.8
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 6/52 (11%)
Query: 6 GKKALVTGASGSIGLA---IAKILYKQGASVGL-HGTSQEKLEKVAKNFDDV 53
K LV G S S+G +AK Y G VG S E +K+ D
Sbjct: 152 DSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTCSSRSAELNKKL--GADHF 201
>gnl|CDD|36417 KOG1203, KOG1203, KOG1203, Predicted dehydrogenase [Carbohydrate
transport and metabolism].
Length = 411
Score = 27.3 bits (60), Expect = 3.9
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 7 KKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDV 53
LV GA+G +G I KIL K+G SV ++K E + F
Sbjct: 80 TTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLGVFFVD 126
>gnl|CDD|145720 pfam02719, Polysacc_synt_2, Polysaccharide biosynthesis protein.
This is a family of diverse bacterial polysaccharide
biosynthesis proteins including the CapD protein, WalL
protein mannosyl-transferase and several putative
epimerases (e.g. WbiI).
Length = 280
Score = 27.1 bits (61), Expect = 5.2
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 10 LVTGASGSIGLAIAKILYKQGAS 32
LVTG GSIG + + + K
Sbjct: 2 LVTGGGGSIGSELCRQILKFNPK 24
>gnl|CDD|133448 cd01080, NAD_bind_m-THF_DH_Cyclohyd, NADP binding domain of
methylene-tetrahydrofolate
dehydrogenase/cyclohydrolase. NADP binding domain of
the Methylene-Tetrahydrofolate
Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase)
bifunctional enzyme. Tetrahydrofolate is a versatile
carrier of activated one-carbon units. The major
one-carbon folate donors are N-5
methyltetrahydrofolate, N5,N10-m-THF, and
N10-formayltetrahydrofolate. The oxidation of metabolic
intermediate m-THF to m-THF requires the enzyme m-THF
DH. In addition, most DHs also have an associated
cyclohydrolase activity which catalyzes its hydrolysis
to N10-formyltetrahydrofolate. m-THF DH is typically
found as part of a multifunctional protein in
eukaryotes. NADP-dependent m-THF DH in mammals, birds
and yeast are components of a trifunctional enzyme with
DH, cyclohydrolase, and synthetase activities. Certain
eukaryotic cells also contain homodimeric bifunctional
DH/cyclodrolase form. In bacteria, monofucntional DH,
as well as bifunctional m-THF m-THF DHm-THF
DHDH/cyclodrolase are found. In addition, yeast (S.
cerevisiae) also express an monofunctional DH. This
family contains the bifunctional DH/cyclohydrolase.
M-THF DH, like other amino acid DH-like NAD(P)-binding
domains, is a member of the Rossmann fold superfamily
which includes glutamate, leucine, and phenylalanine
DHs, m-THF DH, methylene-tetrahydromethanopterin DH,
m-THF DH/cyclohydrolase, Shikimate DH-like proteins,
malate oxidoreductases, and glutamyl tRNA reductase.
Amino acid DHs catalyze the deamination of amino acids
to keto acids with NAD(P)+ as a cofactor. The
NAD(P)-binding Rossmann fold superfamily includes a
wide variety of protein families including NAD(P)-
binding domains of alcohol DHs, tyrosine-dependent
oxidoreductases, glyceraldehyde-3-phosphate DH,
lactate/malate DHs, formate/glycerate DHs, siroheme
synthases, 6-phosphogluconate DH, amino acid DHs,
repressor rex, NAD-binding potassium channel domain,
CoA-binding, and ornithine cyclodeaminase-like domains.
Length = 168
Score = 26.7 bits (60), Expect = 5.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 2 FDLTGKKALVTGASGSIGLAIAKILYKQGASV 33
DL GKK +V G S +G +A +L + A+V
Sbjct: 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATV 71
>gnl|CDD|30801 COG0452, Dfp, Phosphopantothenoylcysteine synthetase/decarboxylase
[Coenzyme metabolism].
Length = 392
Score = 26.9 bits (59), Expect = 5.9
Identities = 26/106 (24%), Positives = 38/106 (35%), Gaps = 29/106 (27%)
Query: 3 DLTGKKALVTG----------------ASGSIGLAIAKILYKQGASVGLHGTSQEKLEKV 46
DL GKK L+T +SG +G A+A ++GASV L + L+
Sbjct: 180 DLKGKKVLITAGPTREYIDPVRFISNRSSGKMGFALAAAAKRRGASVTLV-SGPTSLKIP 238
Query: 47 AKNFDDVDRFLLFPANFSDRVSVEYLSKRVNEEMGGVDILVNNAGI 92
A S E + V E DI ++ A +
Sbjct: 239 AG------------VEVVKVESAEEMLNAVLEAALPADIFISAAAV 272
>gnl|CDD|31263 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent
dehydrogenases [Amino acid transport and metabolism /
General function prediction only].
Length = 350
Score = 26.5 bits (58), Expect = 6.0
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 6 GKKALVTGASGSIGLAIAKILYKQGAS-VGLHGTSQEKLEKVAKNF 50
G +V GA G IGL + GAS V + S E+LE +
Sbjct: 169 GGTVVVVGA-GPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAG 213
>gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent
quinone reductase activity (QOR). Zeta-crystallin is a
eye lens protein with NADP-dependent quinone reductase
activity (QOR). It has been cited as a structural
component in mammalian eyes, but also has homology to
quinone reductases in unrelated species. QOR catalyzes
the conversion of a quinone and NAD(P)H to a
hydroquinone and NAD(P+. Quinones are cyclic diones
derived from aromatic compounds. Membrane bound QOR acts
in the respiratory chains of bacteria and mitochondria,
while soluble QOR acts to protect from toxic quinones
(e.g. DT-diaphorase) or as a soluble eye-lens protein in
some vertebrates (e.g. zeta-crystalin). QOR reduces
quinones through a semi-quinone intermediate via a
NAD(P)H-dependent single electron transfer. QOR is a
member of the medium chain dehydrogenase/reductase
family, but lacks the zinc-binding sites of the
prototypical alcohol dehydrogenases of this group.
Alcohol dehydrogenase in the liver converts ethanol and
NAD+ to acetaldehyde and NADH, while in yeast and some
other microorganisms ADH catalyzes the conversion
acetaldehyde to ethanol in alcoholic fermentation. ADH
is a member of the medium chain alcohol dehydrogenase
family (MDR), which has a NAD(P)(H)-binding domain in a
Rossmann fold of a beta-alpha form. The NAD(H)-binding
region is comprised of 2 structurally similar halves,
each of which contacts a mononucleotide. The N-terminal
catalytic domain has a distant homology to GroES. These
proteins typically form dimers (typically higher plants,
mammals) or tetramers (yeast, bacteria), and have 2
tightly bound zinc atoms per subunit, a catalytic zinc
at the active site, and a structural zinc in a lobe of
the catalytic domain. NAD(H)-binding occurs in the
cleft between the catalytic and coenzyme-binding domains
at the active site, and coenzyme binding induces a
conformational closing of this cleft. Coenzyme binding
typically precedes and contributes to substrate binding.
In human ADH catalysis, the zinc ion helps coordinate
the alcohol, followed by deprotonation of a histidine,
the ribose of NAD, a serine, then the alcohol, which
allows the transfer of a hydride to NAD+, creating NADH
and a zinc-bound aldehyde or ketone. In yeast and some
bacteria, the active site zinc binds an aldehyde,
polarizing it, and leading to the reverse reaction.
Length = 325
Score = 26.8 bits (60), Expect = 6.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 4 LTGKKALVTGASGSIGLAIAKILYKQGASV 33
G+ LV G SG++G A ++ GA V
Sbjct: 143 KAGETVLVHGGSGAVGHAAVQLARWAGARV 172
>gnl|CDD|176183 cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putative quinone
oxidoreductases. Yhdh and yhfp-like putative quinone
oxidoreductases (QOR). QOR catalyzes the conversion of a
quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones
are cyclic diones derived from aromatic compounds.
Membrane bound QOR actin the respiratory chains of
bacteria and mitochondria, while soluble QOR acts to
protect from toxic quinones (e.g. DT-diaphorase) or as a
soluble eye-lens protein in some vertebrates (e.g.
zeta-crystalin). QOR reduces quinones through a
semi-quinone intermediate via a NAD(P)H-dependent single
electron transfer. QOR is a member of the medium chain
dehydrogenase/reductase family, but lacks the
zinc-binding sites of the prototypical alcohol
dehydrogenases of this group. NAD(P)(H)-dependent
oxidoreductases are the major enzymes in the
interconversion of alcohols and aldehydes, or ketones.
Alcohol dehydrogenase in the liver converts ethanol and
NAD+ to acetaldehyde and NADH, while in yeast and some
other microorganisms ADH catalyzes the conversion
acetaldehyde to ethanol in alcoholic fermentation. ADH
is a member of the medium chain alcohol dehydrogenase
family (MDR), which has a NAD(P)(H)-binding domain in a
Rossmann fold of a beta-alpha form. The NAD(H)-binding
region is comprised of 2 structurally similar halves,
each of which contacts a mononucleotide. A GxGxxG motif
after the first mononucleotide contact half allows the
close contact of the coenzyme with the ADH backbone.
The N-terminal catalytic domain has a distant homology
to GroES. These proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and have 2 tightly bound zinc atoms per
subunit, a catalytic zinc at the active site and a
structural zinc in a lobe of the catalytic domain.
NAD(H) binding occurs in the cleft between the catalytic
and coenzyme-binding domains at the active site, and
coenzyme binding induces a conformational closing of
this cleft. Coenzyme binding typically precedes and
contributes to substrate binding. In human ADH
catalysis, the zinc ion helps coordinate the alcohol,
followed by deprotonation of a histidine, the ribose of
NAD, a serine, then the alcohol, which allows the
transfer of a hydride to NAD+, creating NADH and a
zinc-bound aldehyde or ketone. In yeast and some
bacteria, the active site zinc binds an aldehyde,
polarizing it, and leading to the reverse reaction.
Length = 325
Score = 26.7 bits (60), Expect = 6.3
Identities = 14/25 (56%), Positives = 19/25 (76%), Gaps = 2/25 (8%)
Query: 10 LVTGASGSIG-LAIAKILYKQGASV 33
LVTGA+G +G +A+A IL K G +V
Sbjct: 151 LVTGATGGVGSIAVA-ILAKLGYTV 174
>gnl|CDD|30630 COG0282, ackA, Acetate kinase [Energy production and conversion].
Length = 396
Score = 26.7 bits (59), Expect = 6.9
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 21 AIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFPANFSDRVSVEYLSKRVNEEM 80
I +L K+ +GL G S + + + + + + L F R+ +Y+ +
Sbjct: 261 EIDTLLNKKSGLLGLSGLSSD-MRDLEEAAAEGNEAKLALDMFVYRI-AKYIGSYAAA-L 317
Query: 81 GGVDILVNNAGIVRDSLFMRAR 102
GG+D LV AGI +S +R
Sbjct: 318 GGLDALVFTAGIGENSALVREL 339
>gnl|CDD|145796 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid
dehydrogenase, NAD binding domain. This domain is
inserted into the catalytic domain, the large
dehydrogenase and D-lactate dehydrogenase families in
SCOP. N-terminal portion of which is represented by
family pfam00389.
Length = 176
Score = 26.7 bits (60), Expect = 7.0
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 3 DLTGKKALVTGASGSIGLAIAKILYKQGASVGLHGTS-QEKLEKVAKNFDDVDRFL 57
+L+GK + G G IG A+A+ L G V + + + E + + +D L
Sbjct: 33 ELSGKTVGIIGL-GRIGRAVARRLKAFGMKVIAYDRYPKAEAEALGARYVSLDELL 87
>gnl|CDD|48470 cd03482, MutL_Trans_MutL, MutL_Trans_MutL: transducer domain,
having a ribosomal S5 domain 2-like fold, found in
proteins similar to Escherichia coli MutL. EcMutL
belongs to the DNA mismatch repair (MutL/MLH1/PMS2)
family. This transducer domain is homologous to the
second domain of the DNA gyrase B subunit, which is
known to be important in nucleotide hydrolysis and the
transduction of structural signals from the ATP-binding
site to the DNA breakage/reunion regions of the enzymes.
It has been suggested that during initiation of DNA
mismatch repair in E. coli, the mismatch recognition
protein MutS recruits MutL in the presence of ATP. The
MutS(ATP)-MutL ternary complex formed, then recruits the
latent endonuclease MutH. Prokaryotic MutS and MutL are
homodimers..
Length = 123
Score = 26.3 bits (58), Expect = 8.3
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 89 NAGIVRDSLFMRARYEDWDDVLSVNLTSAFLL 120
N +VRD L A + + DVL A++L
Sbjct: 51 NGRMVRDKLISHAVRQAYSDVLHGGRHPAYVL 82
>gnl|CDD|35096 COG5537, IRR1, Cohesin [Cell division and chromosome partitioning].
Length = 740
Score = 26.1 bits (57), Expect = 8.4
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 12/75 (16%)
Query: 67 VSVEYLSKRVNEEMGGVDILVNNAGIVRD-------SLFMRARYEDWDDVLSVNLTSAFL 119
S+ R+NE + N ++RD S+F+ +RY D DDV+ V + +
Sbjct: 246 FSLSEKKSRMNELA----LYDLNPSLIRDEIKDICDSVFV-SRYIDVDDVIRVLCSMSLR 300
Query: 120 LTRQLVPLMIRNRFG 134
LVP R G
Sbjct: 301 DWIGLVPDYFRKILG 315
>gnl|CDD|146655 pfam04127, DFP, DNA / pantothenate metabolism flavoprotein. The
DNA/pantothenate metabolism flavoprotein (EC:4.1.1.36)
affects synthesis of DNA, and pantothenate metabolism.
Length = 197
Score = 26.1 bits (58), Expect = 8.7
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 14 ASGSIGLAIAKILYKQGASV 33
+SG +G AIA+ K+GA V
Sbjct: 26 SSGKMGAAIAEEFLKRGADV 45
>gnl|CDD|176180 cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone
oxidoreductase. PIG3 p53-inducible quinone
oxidoreductase, a medium chain dehydrogenase/reductase
family member, acts in the apoptotic pathway. PIG3
reduces ortho-quinones, but its apoptotic activity has
been attributed to oxidative stress generation, since
overexpression of PIG3 accumulates reactive oxygen
species. PIG3 resembles the MDR family member quinone
reductases, which catalyze the reduction of quinone to
hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are
the major enzymes in the interconversion of alcohols and
aldehydes or ketones. Alcohol dehydrogenase in the
liver converts ethanol and NAD+ to acetaldehyde and
NADH, while in yeast and some other microorganisms ADH
catalyzes the conversion acetaldehyde to ethanol in
alcoholic fermentation. ADH is a member of the medium
chain alcohol dehydrogenase family (MDR), which has a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. The NAD(H)-binding region is comprised
of 2 structurally similar halves, each of which contacts
a mononucleotide. A GxGxxG motif after the first
mononucleotide contact half allows the close contact of
the coenzyme with the ADH backbone. The N-terminal
catalytic domain has a distant homology to GroES.
These proteins typically form dimers (typically higher
plants, mammals) or tetramers (yeast, bacteria), and
have 2 tightly bound zinc atoms per subunit, a catalytic
zinc at the active site, and a structural zinc in a lobe
of the catalytic domain. NAD(H) binding occurs in the
cleft between the catalytic and coenzyme-binding domains
at the active site, and coenzyme binding induces a
conformational closing of this cleft. Coenzyme binding
typically precedes and contributes to substrate binding.
In human ADH catalysis, the zinc ion helps coordinate
the alcohol, followed by deprotonation of a histidine,
the ribose of NAD, a serine, then the alcohol, which
allows the transfer of a hydride to NAD+, creating NADH
and a zinc-bound aldehyde or ketone. In yeast and some
bacteria, the active site zinc binds an aldehyde,
polarizing it, and leading to the reverse reaction.
Length = 323
Score = 26.3 bits (59), Expect = 9.1
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 10/46 (21%)
Query: 6 GKKALVTGASGSIGLA---IAKILYKQGASVGLHGT--SQEKLEKV 46
G+ L+ G + +G A +AK L GA V T S+EKLE
Sbjct: 140 GETVLIHGGASGVGTAAIQLAKAL---GARV--IATAGSEEKLEAC 180
>gnl|CDD|177015 CHL00076, chlB, photochlorophyllide reductase subunit B.
Length = 513
Score = 26.1 bits (58), Expect = 9.5
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 4 LTGKKALVTGASGSIGLAIAKILYKQ-GASVGLHGT 38
LTGKKA+V G + + ++ KIL ++ G V GT
Sbjct: 303 LTGKKAVVFGDA-THAASMTKILAREMGIRVSCAGT 337
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.320 0.135 0.379
Gapped
Lambda K H
0.267 0.0752 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,765,722
Number of extensions: 142349
Number of successful extensions: 525
Number of sequences better than 10.0: 1
Number of HSP's gapped: 479
Number of HSP's successfully gapped: 96
Length of query: 247
Length of database: 6,263,737
Length adjustment: 91
Effective length of query: 156
Effective length of database: 4,297,318
Effective search space: 670381608
Effective search space used: 670381608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.3 bits)