BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780535|ref|YP_003064948.1|
3-ketoacyl-(acyl-carrier-protein) reductase [Candidatus Liberibacter
asiaticus str. psy62]
(247 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780535|ref|YP_003064948.1| 3-ketoacyl-(acyl-carrier-protein) reductase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 247
Score = 503 bits (1296), Expect = e-145, Method: Compositional matrix adjust.
Identities = 247/247 (100%), Positives = 247/247 (100%)
Query: 1 MFDLTGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFP 60
MFDLTGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFP
Sbjct: 1 MFDLTGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFP 60
Query: 61 ANFSDRVSVEYLSKRVNEEMGGVDILVNNAGIVRDSLFMRARYEDWDDVLSVNLTSAFLL 120
ANFSDRVSVEYLSKRVNEEMGGVDILVNNAGIVRDSLFMRARYEDWDDVLSVNLTSAFLL
Sbjct: 61 ANFSDRVSVEYLSKRVNEEMGGVDILVNNAGIVRDSLFMRARYEDWDDVLSVNLTSAFLL 120
Query: 121 TRQLVPLMIRNRFGRVINITSVVGFTGNAGQVNYCAAKSGLTGFTKALAQETGRRNVTVN 180
TRQLVPLMIRNRFGRVINITSVVGFTGNAGQVNYCAAKSGLTGFTKALAQETGRRNVTVN
Sbjct: 121 TRQLVPLMIRNRFGRVINITSVVGFTGNAGQVNYCAAKSGLTGFTKALAQETGRRNVTVN 180
Query: 181 CVAPGFIGSDMTVNLTEDQKGKIISSIPMKRMGAVDDIAAAVLYLSSLEASYVTGQTIHV 240
CVAPGFIGSDMTVNLTEDQKGKIISSIPMKRMGAVDDIAAAVLYLSSLEASYVTGQTIHV
Sbjct: 181 CVAPGFIGSDMTVNLTEDQKGKIISSIPMKRMGAVDDIAAAVLYLSSLEASYVTGQTIHV 240
Query: 241 NGGMAMI 247
NGGMAMI
Sbjct: 241 NGGMAMI 247
>gi|254780337|ref|YP_003064750.1| oxidoreductase protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 257
Score = 68.9 bits (167), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 94/191 (49%), Gaps = 2/191 (1%)
Query: 3 DLTGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFL-LFPA 61
+L + ALVTG+S IG A L + GA V G S +LEK+ +++ + +F
Sbjct: 15 NLDNRLALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKINKKIDIFAF 74
Query: 62 NFSDRVSVEYLSKRVNEEMGGVDILVNNAGIVRD-SLFMRARYEDWDDVLSVNLTSAFLL 120
+ D ++E + + G +DIL+ NAGI+ S + + + + DV+SVN+ + + +
Sbjct: 75 DLRDSNALELTKTYIAKRWGKLDILIANAGILGSISPIWQIKEKSFADVISVNVMANWNI 134
Query: 121 TRQLVPLMIRNRFGRVINITSVVGFTGNAGQVNYCAAKSGLTGFTKALAQETGRRNVTVN 180
R P + ++ GR I ++S + Y A+K+ + + ++ET + V
Sbjct: 135 MRSFDPWLKKSHCGRAIILSSGAAYKCRPLWGAYSASKAAIEALARTWSKETVNTALRVI 194
Query: 181 CVAPGFIGSDM 191
+ PG + M
Sbjct: 195 NIDPGPTRTSM 205
>gi|254780462|ref|YP_003064875.1| enoyl-(acyl carrier protein) reductase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 267
Score = 67.4 bits (163), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 121/260 (46%), Gaps = 26/260 (10%)
Query: 4 LTGKKALVTGASG--SIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFPA 61
L GK+ L+ G + SI IAK+L+ GA + + +++ VD + P
Sbjct: 5 LKGKRGLIMGVANDHSIAWGIAKVLHSAGAQLAFSYQGESIGKRLKPLALTVDSDFMIPC 64
Query: 62 NFSDRVSVEYLSKRVNEEMGGVDILVNNAGIVRDSLFMRARYEDW--DDVLSVNLTSAFL 119
N D S++ L +R+ E +D +V++ D +R Y + D+ + L S F
Sbjct: 65 NVEDPSSMDLLFERIKERWETLDFVVHSIAF-SDKNELRGPYYNTSRDNFIQTMLVSCFS 123
Query: 120 LTR------QLVPLMIRNRFGRVINITSVVGFTGNAGQV-NYCA---AKSGLTGFTKALA 169
T QL+P G +I +T + G+ V NY A AKS L TK LA
Sbjct: 124 FTEIVRRAAQLMP-----HGGAMITLT----YGGSMRVVPNYNAMAPAKSALESSTKYLA 174
Query: 170 QETGRRNVTVNCVAPGFIGSDMTVNLT--EDQKGKIISSIPMKRMGAVDDIAAAVLYLSS 227
+ G N+ +N ++ G + + +++ D + P+KR +++DI + LYL S
Sbjct: 175 CDYGGMNIRINAISAGPVRTLAGASISNGRDIAAWSKENSPLKRTVSLEDIGNSALYLLS 234
Query: 228 LEASYVTGQTIHVNGGMAMI 247
++ VTG+ +V+ G ++
Sbjct: 235 YLSNGVTGEIHYVDCGYNIV 254
>gi|254781166|ref|YP_003065579.1| enoyl-(acyl carrier protein) reductase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 284
Score = 46.2 bits (108), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 122/254 (48%), Gaps = 19/254 (7%)
Query: 7 KKALVTGASG--SIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFPANFS 64
K+ +V G + S+ +IAK+ + GA V L +++ + +D F+ N S
Sbjct: 11 KRGIVLGVANNRSLAWSIAKMCHAAGAKVALTWQGDATKKRIEGLVEGMDFFMAGHCNVS 70
Query: 65 DRVSVEYLSKRVNEEMGGVDILVNNAGIVRDSLFMRARY-----EDWDDVLSVNLTSAFL 119
+ +++ + + + +E G +D LV+ A D + Y E++ + + V++ S
Sbjct: 71 NSETIDDVFRNLEKEWGTIDFLVH-AIAFSDKAELTGPYINTTRENFLNTMDVSVYSFTA 129
Query: 120 LTRQLVPLMIRNRFGRVINITSVVGFTGNAGQVNYC--AAKSGLTGFTKALAQETGRRN- 176
L + LM N+ G ++ +T +G N C AK+ L + LA + GR++
Sbjct: 130 LAARASSLM--NKGGSMLTLT-YLGADKVMPHYN-CMGPAKAALQSAVRYLAMDLGRQSG 185
Query: 177 VTVNCVAPGFIGSDMTVNLTEDQ---KGKIISSIPMKRMGAVDDIAAAVLYLSSLEASYV 233
+ VN ++ G + + +++ + K +S P+ R D++A + LYL S +S V
Sbjct: 186 IRVNALSAGPAKTLASSGISDFRYILKWNEYNS-PLGRNITHDEVAKSALYLLSDFSSGV 244
Query: 234 TGQTIHVNGGMAMI 247
TG+ +V+ G ++
Sbjct: 245 TGECHYVDAGYHIV 258
>gi|254780864|ref|YP_003065277.1| NADH-ubiquinone oxidoreductase, chain 4L [Candidatus Liberibacter
asiaticus str. psy62]
Length = 68
Score = 27.7 bits (60), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 10 LVTGASGSIGLAIAKILYKQGASVGLHGTSQEK 42
LV A SIGLAI I Y++ S+ + +Q K
Sbjct: 35 LVAAAETSIGLAILVIFYRKCGSISVDDFNQMK 67
>gi|254780833|ref|YP_003065246.1| hypothetical protein CLIBASIA_03630 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 371
Score = 26.9 bits (58), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 39 SQEKLEKVAKNFDDVDRFLLF 59
++EKLE +AK DD ++++F
Sbjct: 269 AKEKLEHIAKGHDDYKKYIIF 289
>gi|254780601|ref|YP_003065014.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 573
Score = 25.4 bits (54), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 8/33 (24%), Positives = 20/33 (60%)
Query: 139 ITSVVGFTGNAGQVNYCAAKSGLTGFTKALAQE 171
I +++ + G + +C+ ++ ++ FTK LA+
Sbjct: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEH 267
>gi|254781225|ref|YP_003065638.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 789
Score = 22.7 bits (47), Expect = 6.8, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 175 RNVTVNCVAPGFIGSDMTVNLTEDQKGK-IISSIPMK-RMGAVDD 217
R VT+N GFIG + ++ K K II + +K +VDD
Sbjct: 736 RTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDD 780
>gi|254780432|ref|YP_003064845.1| acetylornithine transaminase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 392
Score = 22.3 bits (46), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 34 GLHGTSQEKLEKVAKNFDDVDRFLLF 59
G+ +E L+++ K DD+D L+F
Sbjct: 190 GVRKVPEEFLQQLRKICDDIDALLIF 215
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.320 0.135 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 151,034
Number of Sequences: 1233
Number of extensions: 6092
Number of successful extensions: 26
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 16
length of query: 247
length of database: 328,796
effective HSP length: 72
effective length of query: 175
effective length of database: 240,020
effective search space: 42003500
effective search space used: 42003500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 37 (18.9 bits)